Rroxscaffold_6G00407510

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003953
Physical Location & Seq
Reverse (-)
30150818 .. 30152798
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407510.1

Sequence Viewer

Length: 1545 bp
ATGGGACCGATCATTTCTTCGGTGAAAACAACCGAACCAAAATTTCCAATGGCTGAAGCTCAGGTTGCTGTAGACAGATTCAGTGAACTCCCACCGGAAATCGCCCATCACATTCTGGCCTTCCTTTCCATGGCTGATGTTACTCGAGTGAGCAGCTTGTCCAAAAGATGTAGAGGGCTTCATCTATCAAATCCCACATTGAATTTCGATTTATTTCCCTCCCAGTCCACCCTCACATTTGATAAGAGGTTGGAGTTGTTGAACTCCTTGGATCGCTTCCTGTTTCAACGAGGGAATAACAAGGTAAAATACTTTTCCATTATTTGGACTTCTGAATACCATTTTGGAGAAACCGAAATAGAAAGTCACTGTGGTCTTGAGAAATCACGAATTCTGGGTTGGATCCAATATGCAGTACGTTGTAATGTTGAAGAGCTTTATGTTTCCTTTGGAATTGCGATGCCAAGTCTAGGAGATTTTCTTCAGGATGATGATATAGATTTTCCTTCTCGTGTCTTTCTTTGCGAGTCTTTGAGGCAGTTAACCCTGGACATGAAGTGTGCAGTTGTTGAACCTCCCTCCTTTTCTACTTCTCCTGCCTCTAATCTTGTGTCCTTGATTTTGAGAAATGTAACTATAGAAGATGATGGAGGGTTTTGCAAATGGGTCTCCTACTGTTGTAGGTGTATTAGGAAATTGGGGCTGGAACGGGTTGATGGGTTGGAAAACATCACCATTGAAAGTTCGACTTTGGAGTCATTCTTGGTCCAGTGTCCCTGTTATTTCGACATTGACCGTCTTGTAATAGCTGGTGATAAAATTGAAAATATAGATTTAGATTGGGAGTATGATTCAGACAAGCACAACAACAAAAGTTTGTTGAGTATTTCGGCCCCAAATCTGAAGTATCTGAAATGGGTTGGGAATATGTTGAATCATCAGCATCTTGGGGAGATGAATTGTTTGGAACAAGTTGAGATTTCTCTGACTTCTTATGATGTAAATGATTTGGATAGCGTTTGTGAGCAGTTCTTGTGCAGTATAAGCAGCGTTAAAGTTCTCCTTCTAGACCAAGTGACTGCCAAGACTTTGTTCAGGGATGGTTTCACACCTGCCCCAATGGGCAATGTTTGGTACTTGCTTATGTCTATTTGGTGCAGTATTGATGATAACCTTGTGCCAGCCATGACCTCTCTTTTCAGGGCTGTGCCTAATTTGACTACTTTGAACGTATCATCATCTCCTGAGTTTCCTTTTCATGGTGGTGGTGATAATGTATCTGGATTTGAGAGGGGATATTGGGAACTCCAGGGGCTTGATTTTGTTTCTAAGCTAGAGGAGGTAACCATAGAGCTTACCACTGGGTCCAATGGATTTGAATTAGCAAGGTACATGCTTGAGCATGCTGGTAATTTGAAGAAAATGTTTGTTATTACTACACCCGATCAATCAAGTTTAGTACCGGAAATACGGAGAACCAACCCTACTTCCAATGCTAGAGTTGTCTTTCTGGTAAAACGGAAGCTGCCTCCTCGTCGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

514

Amino Acids

58.11

Weight (kDa)

5.13

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 133 - 330 1e-08 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1120
AasI GACNNNNNNGTC 1 cut(s) 754
Acc36I ACCTGC 1 cut(s) 1120
AccB7I CCANNNNNTGG 1 cut(s) 324
AccI GTMKAC 1 cut(s) 72
AclWI GGATC 3 cut(s) 279, 397, 410
AcsI RAATTY 3 cut(s) 41, 202, 390
AcuI CTGAAG 3 cut(s) 75, 467, 923
AfaI GTAC 4 cut(s) 417, 1136, 1391, 1461
AfiI CCNNNNNNNGG 4 cut(s) 130, 324, 470, 1259
AjnI CCWGG 2 cut(s) 546, 1308
AjuI GAANNNNNNNTTGG 6 cut(s) 327, 359, 382, 414, 1076, 1108
AluBI AGCT 7 cut(s) 59, 156, 436, 809, 1333, 1354, 1525
AluI AGCT 7 cut(s) 59, 156, 436, 809, 1333, 1354, 1525
Alw26I GTCTC 1 cut(s) 673
AlwI GGATC 3 cut(s) 279, 397, 410
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 2 cut(s) 117, 891
ApeKI GCWGC 3 cut(s) 153, 1047, 1525
ApoI RAATTY 3 cut(s) 41, 202, 390
AspS9I GGNCC 4 cut(s) 5, 766, 892, 1365
AsuHPI GGTGA 4 cut(s) 34, 724, 824, 1280
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 3 cut(s) 5, 766, 1365
BamHI GGATCC 1 cut(s) 402
BauI CACGAG 1 cut(s) 510
BbvI GCAGC 3 cut(s) 165, 1059, 1512
BccI CCATC 4 cut(s) 114, 641, 710, 1094
BciT130I CCWGG 2 cut(s) 548, 1310
BcoDI GTCTC 1 cut(s) 673
BfaI CTAG 4 cut(s) 470, 1067, 1334, 1497
BfmI CTRYAG 2 cut(s) 69, 636
BfuAI ACCTGC 1 cut(s) 1120
BisI GCNGC 3 cut(s) 154, 1048, 1526
BlsI GCNGC 3 cut(s) 155, 1049, 1527
Bme1390I CCNGG 2 cut(s) 548, 1310
Bme18I GGWCC 3 cut(s) 5, 766, 1365
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 4 cut(s) 5, 766, 892, 1365
BmiI GGNNCC 4 cut(s) 6, 404, 894, 1366
BmrFI CCNGG 2 cut(s) 548, 1310
BmrI ACTGGG 2 cut(s) 217, 1371
BmsI GCATC 2 cut(s) 450, 952
BmuI ACTGGG 2 cut(s) 217, 1371
BpmI CTGGAG 1 cut(s) 1292
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 398, 1418
BsaI GGTCTC 1 cut(s) 673
BsaJI CCNNGG 4 cut(s) 129, 267, 546, 1309
BsaWI WCCGGW 2 cut(s) 94, 1462
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 324, 470, 1259
Bse1I ACTGG 3 cut(s) 223, 769, 1366
Bse3DI GCAATG 1 cut(s) 1132
BseBI CCWGG 2 cut(s) 548, 1310
BseDI CCNNGG 4 cut(s) 129, 267, 546, 1309
BseGI GGATG 2 cut(s) 493, 1105
BseLI CCNNNNNNNGG 4 cut(s) 130, 324, 470, 1259
BseMI GCAATG 1 cut(s) 1132
BseMII CTCAG 2 cut(s) 74, 1236
BseNI ACTGG 3 cut(s) 223, 769, 1366
BseRI GAGGAG 2 cut(s) 1352, 1521
BseXI GCAGC 3 cut(s) 165, 1059, 1512
BsgI GTGCAG 3 cut(s) 582, 1057, 1177
BshFI GGCC 2 cut(s) 119, 893
BsiHKCI CYCGRG 1 cut(s) 144
BsiSI CCGG 2 cut(s) 95, 1463
BslFI GGGAC 2 cut(s) 18, 759
BslI CCNNNNNNNGG 4 cut(s) 130, 324, 470, 1259
BsmAI GTCTC 1 cut(s) 673
BsmFI GGGAC 2 cut(s) 18, 759
BsnI GGCC 2 cut(s) 119, 893
Bso31I GGTCTC 1 cut(s) 673
BsoBI CYCGRG 1 cut(s) 144
Bsp143I GATC 4 cut(s) 9, 271, 402, 1444
Bsp19I CCATGG 1 cut(s) 129
BspANI GGCC 2 cut(s) 119, 893
BspCNI CTCAG 2 cut(s) 73, 1237
BspLI GGNNCC 4 cut(s) 6, 404, 894, 1366
BspMI ACCTGC 1 cut(s) 1120
BspPI GGATC 3 cut(s) 279, 397, 410
BspQI GCTCTTC 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 673
BsrDI GCAATG 1 cut(s) 1132
BsrI ACTGG 3 cut(s) 223, 769, 1366
BssECI CCNNGG 4 cut(s) 129, 267, 546, 1309
BssMI GATC 4 cut(s) 9, 271, 402, 1444
BssSI CACGAG 1 cut(s) 510
BssT1I CCWWGG 2 cut(s) 129, 267
Bst2BI CACGAG 1 cut(s) 510
Bst2UI CCWGG 2 cut(s) 548, 1310
Bst4CI ACNGT 3 cut(s) 371, 677, 797
Bst6I CTCTTC 1 cut(s) 426
BstC8I GCNNGC 2 cut(s) 1182, 1404
BstDEI CTNAG 3 cut(s) 60, 1245, 1329
BstDSI CCRYGG 1 cut(s) 129
BstEII GGTNACC 1 cut(s) 1342
BstF5I GGATG 2 cut(s) 493, 1105
BstKTI GATC 4 cut(s) 12, 274, 405, 1447
BstMAI GTCTC 1 cut(s) 673
BstMBI GATC 4 cut(s) 9, 271, 402, 1444
BstMWI GCNNNNNNNGC 2 cut(s) 65, 1044
BstNI CCWGG 2 cut(s) 548, 1310
BstNSI RCATGY 2 cut(s) 1396, 1406
BstPI GGTNACC 1 cut(s) 1342
BstSCI CCNGG 2 cut(s) 546, 1308
BstSFI CTRYAG 2 cut(s) 69, 636
BstV1I GCAGC 3 cut(s) 165, 1059, 1512
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BsuRI GGCC 2 cut(s) 119, 893
BtgI CCRYGG 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 473
BtsCI GGATG 2 cut(s) 493, 1105
BtsIMutI CAGTG 4 cut(s) 88, 367, 776, 1359
BveI ACCTGC 1 cut(s) 1120
Cac8I GCNNGC 2 cut(s) 1182, 1404
Cfr13I GGNCC 4 cut(s) 5, 766, 892, 1365
Csp6I GTAC 4 cut(s) 416, 1135, 1390, 1460
CviAII CATG 6 cut(s) 130, 553, 1186, 1259, 1393, 1403
CviQI GTAC 4 cut(s) 416, 1135, 1390, 1460
DdeI CTNAG 3 cut(s) 60, 1245, 1329
DpnI GATC 4 cut(s) 11, 273, 404, 1446
DpnII GATC 4 cut(s) 9, 271, 402, 1444
DrdI GACNNNNNNGTC 1 cut(s) 754
DseDI GACNNNNNNGTC 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 2 cut(s) 129, 267
Eco31I GGTCTC 1 cut(s) 673
Eco47I GGWCC 3 cut(s) 5, 766, 1365
Eco57I CTGAAG 3 cut(s) 75, 467, 923
Eco88I CYCGRG 1 cut(s) 144
Eco91I GGTNACC 1 cut(s) 1342
EcoO65I GGTNACC 1 cut(s) 1342
EcoRI GAATTC 1 cut(s) 390
EcoRII CCWGG 2 cut(s) 546, 1308
EcoT14I CCWWGG 2 cut(s) 129, 267
ErhI CCWWGG 2 cut(s) 129, 267
FaeI CATG 6 cut(s) 133, 556, 1189, 1262, 1396, 1406
FalI AAGNNNNNCTT 4 cut(s) 733, 765, 1047, 1079
FaqI GGGAC 2 cut(s) 18, 759
FatI CATG 6 cut(s) 129, 552, 1185, 1258, 1392, 1402
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 154, 1048, 1526
FokI GGATG 2 cut(s) 500, 1112
Fsp4HI GCNGC 3 cut(s) 154, 1048, 1526
FspBI CTAG 4 cut(s) 470, 1067, 1334, 1497
GluI GCNGC 3 cut(s) 154, 1048, 1526
GsuI CTGGAG 1 cut(s) 1292
HaeIII GGCC 2 cut(s) 119, 893
HapII CCGG 2 cut(s) 95, 1463
Hin1II CATG 6 cut(s) 133, 556, 1189, 1262, 1396, 1406
HincII GTYRAC 1 cut(s) 543
HindII GTYRAC 1 cut(s) 543
HinfI GANTC 5 cut(s) 78, 527, 755, 851, 934
HpaI GTTAAC 1 cut(s) 543
HpaII CCGG 2 cut(s) 95, 1463
HphI GGTGA 4 cut(s) 34, 724, 824, 1280
Hpy166II GTNNAC 4 cut(s) 73, 86, 228, 543
Hpy188I TCNGA 5 cut(s) 334, 856, 903, 912, 987
Hpy188III TCNNGA 6 cut(s) 377, 387, 485, 1067, 1244, 1281
Hpy8I GTNNAC 4 cut(s) 73, 86, 228, 543
Hpy99I CGWCG 1 cut(s) 1539
HpyAV CCTTC 3 cut(s) 130, 516, 1073
HpyCH4III ACNGT 3 cut(s) 371, 677, 797
HpyCH4IV ACGT 2 cut(s) 418, 1230
HpyCH4V TGCA 5 cut(s) 413, 563, 660, 1038, 1158
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 1044
HpyF3I CTNAG 3 cut(s) 60, 1245, 1329
HpySE526I ACGT 2 cut(s) 418, 1230
Hsp92II CATG 6 cut(s) 133, 556, 1189, 1262, 1396, 1406
KspAI GTTAAC 1 cut(s) 543
Kzo9I GATC 4 cut(s) 9, 271, 402, 1444
LguI GCTCTTC 1 cut(s) 426
Lsp1109I GCAGC 3 cut(s) 165, 1059, 1512
LweI GCATC 2 cut(s) 450, 952
MaeI CTAG 4 cut(s) 470, 1067, 1334, 1497
MaeII ACGT 2 cut(s) 418, 1230
MaeIII GTNAC 5 cut(s) 139, 365, 631, 1075, 1342
MalI GATC 4 cut(s) 11, 273, 404, 1446
MboI GATC 4 cut(s) 9, 271, 402, 1444
MboII GAAGA 5 cut(s) 9, 443, 473, 653, 1429
MflI RGATCY 1 cut(s) 402
MlyI GAGTC 2 cut(s) 536, 764
MmeI TCCRAC 3 cut(s) 231, 380, 702
MseI TTAA 3 cut(s) 542, 1053, 1543
MslI CAYNNNNRTG 1 cut(s) 1263
MspI CCGG 2 cut(s) 95, 1463
MspR9I CCNGG 2 cut(s) 548, 1310
MvaI CCWGG 2 cut(s) 548, 1310
MwoI GCNNNNNNNGC 2 cut(s) 65, 1044
NcoI CCATGG 1 cut(s) 129
NdeII GATC 4 cut(s) 9, 271, 402, 1444
NlaIII CATG 6 cut(s) 133, 556, 1189, 1262, 1396, 1406
NlaIV GGNNCC 4 cut(s) 6, 404, 894, 1366
NmuCI GTSAC 2 cut(s) 365, 1075
NspI RCATGY 2 cut(s) 1396, 1406
PaeI GCATGC 1 cut(s) 1406
PaeR7I CTCGAG 1 cut(s) 144
PaqCI CACCTGC 1 cut(s) 1120
PciSI GCTCTTC 1 cut(s) 426
PfeI GAWTC 3 cut(s) 78, 851, 934
PflMI CCANNNNNTGG 1 cut(s) 324
PkrI GCNGC 3 cut(s) 155, 1049, 1527
PleI GAGTC 2 cut(s) 535, 763
PpsI GAGTC 2 cut(s) 535, 763
Psp6I CCWGG 2 cut(s) 546, 1308
PspEI GGTNACC 1 cut(s) 1342
PspGI CCWGG 2 cut(s) 546, 1308
PspN4I GGNNCC 4 cut(s) 6, 404, 894, 1366
PspPI GGNCC 4 cut(s) 5, 766, 892, 1365
PspXI VCTCGAGB 1 cut(s) 144
PsrI GAACNNNNNNTAC 2 cut(s) 1468, 1500
PsuI RGATCY 1 cut(s) 402
RsaI GTAC 4 cut(s) 417, 1136, 1391, 1461
RsaNI GTAC 4 cut(s) 416, 1135, 1390, 1460
RseI CAYNNNNRTG 1 cut(s) 1263
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 3 cut(s) 542, 1053, 1543
SatI GCNGC 3 cut(s) 154, 1048, 1526
Sau3AI GATC 4 cut(s) 9, 271, 402, 1444
Sau96I GGNCC 4 cut(s) 5, 766, 892, 1365
SchI GAGTC 2 cut(s) 536, 764
ScrFI CCNGG 2 cut(s) 548, 1310
SfaNI GCATC 2 cut(s) 450, 952
SfcI CTRYAG 2 cut(s) 69, 636
Sfr274I CTCGAG 1 cut(s) 144
SinI GGWCC 3 cut(s) 5, 766, 1365
SlaI CTCGAG 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 1263
SmlI CTYRAG 3 cut(s) 144, 377, 1397
SmoI CTYRAG 3 cut(s) 144, 377, 1397
SphI GCATGC 1 cut(s) 1406
SspMI CTAG 4 cut(s) 470, 1067, 1334, 1497
StyD4I CCNGG 2 cut(s) 546, 1308
StyI CCWWGG 2 cut(s) 129, 267
TaaI ACNGT 3 cut(s) 371, 677, 797
TaiI ACGT 2 cut(s) 421, 1233
TaqI TCGA 4 cut(s) 145, 207, 746, 786
TaqII GACCGA 1 cut(s) 22
TfiI GAWTC 3 cut(s) 78, 851, 934
Tru1I TTAA 3 cut(s) 542, 1053, 1543
Tru9I TTAA 3 cut(s) 542, 1053, 1543
TscAI CASTG 4 cut(s) 88, 374, 776, 1366
TseFI GTSAC 2 cut(s) 365, 1075
TseI GCWGC 3 cut(s) 153, 1047, 1525
Tsp45I GTSAC 2 cut(s) 365, 1075
TspDTI ATGAA 4 cut(s) 170, 569, 971, 1247
TspGWI ACGGA 2 cut(s) 1486, 1534
TspRI CASTG 4 cut(s) 88, 374, 776, 1366
Van91I CCANNNNNTGG 1 cut(s) 324
VpaK11BI GGWCC 3 cut(s) 5, 766, 1365
XapI RAATTY 3 cut(s) 41, 202, 390
XbaI TCTAGA 1 cut(s) 1066
XceI RCATGY 2 cut(s) 1396, 1406
XhoI CTCGAG 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 4 cut(s) 470, 1067, 1334, 1497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.