Rh3AG188300

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003953
Physical Location & Seq
Forward (+)
18038175 .. 18039862
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG188300.1

Sequence Viewer

Length: 1497 bp
ATGGCTGAAGCTCAGGTTGCTGTAGACAGATTCAGTGAACTCCCACCGGAAATAACCCATCACATTCTGGCCTTCCTTCCCATAGCTGGTGTCACTCGAGTGAGCAGCTTGTCCAAAAGATGCAGAGCGCTTCATCTATCAAATCCCACATTAAATTTCGATTCATTTCCCTCCGAGTCCACCCTTACATTTGATAAGAGGTTGGAGTTGTTGAACTCCTTGGATCGCTTCCTCATTCAACGAGGGAATAACAAGGTAAACTACTTATCCATTATTTGGACACCTGAATACCATTTTGGGGAAACCAAAATAGAAAGTCACTGTGGTCTTGACAAATCACGAATTCTGGGTTGGATTCAAAATGCAGTACGTTGTAATGTTGAAAACCTTAATGTTTTCTTTGCAACTTTTATGCCAACTCTAGGAGATACTGATCAGGATCATGGTATAGATTTTCCTTCTTGTGTCTTTCTTTGCGAGTCTTTGAGGTACTTAACCCTGGACATGAAGCGTGCAATTCTTGAAGCTCCCTCCTTTAGTACTTCTCCTACCTCTAATCTCGTGTCCTTGAGTTTGAGAAATGTGACTATAGAAGATGATGGAGGGTTTTGCAAATGGGTCTCCTACTGTTGTAGGTTTATTAAGAAATTGTGGCTGGAACGGGTTTATGGGTTGGAAAACATCACCATTGAAAGTTCGTCCTTGGAGTCACTGTCGGTCCAGTTTCCCTGTTATTTTGACGTTGCCCGTCTTGTAATAGCTGGTGATAAAATTGAAAATATAGATATAGATTGGGAGTATGATTCAGACAAGCGCAACAATAGAAGTTTGTTGAATATTTCGGCCCCAAATCTGAAGTGTCTGAAATGGGTTGGGAATATGTTGAACCATCAGCATCTTGGGGAAATGAATTGTTTGGAACAAGTTGAGATTTCTCTGACTTCTTATGATGTAAATGATTTGGATAGCGTTTGTGAGCAGTTCTTGTGCAGTATAAGCAGTGTTAAAGTTCTTCTTCTAGTCCAAGTAACTGCCAAGACTTTGTTCAGGGAAGGTTTCACACCTGCCCCATTGGGCAATGTGTGGTACTTGCTTATGTCTATTTGGTGCAGTATTGATGACAACCTTGTGCTAGCCGTGACCTCTCTTTTCAGGGCTGTGCCTAATTTGATTACTTTGAACGTATCATCATCTCCTGAGTTTCCTTTTCATGGTGGTGGTGATAATGTATCTGGATTTGATAGGGGATATTGGGAACTCCAGGGGCTTGATTTTGTTTCTAAGCTAGAGGAGGTAACCATAGAGCTTACCACTGGGTCTAATGGATTTGAATTAGCGAGGTACATGCTTGAGCATGCTGGTAATTTGAAGAAAATGTTTGTTATTACTACACCCGATCAATCAAGTTTAGTACCGGAAATACGGAGAACCAACCGTACTTCCAATGCTAGAGTTGTCTTTCTGGTAAAACGGAAGCTGCCTCCTCGTCGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

498

Amino Acids

56.4

Weight (kDa)

5.58

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1072
Acc36I ACCTGC 1 cut(s) 1072
AccB7I CCANNNNNTGG 1 cut(s) 276
AccI GTMKAC 1 cut(s) 24
AclWI GGATC 2 cut(s) 231, 447
AcsI RAATTY 2 cut(s) 154, 342
AcuI CTGAAG 2 cut(s) 27, 875
AfaI GTAC 7 cut(s) 369, 491, 541, 1088, 1343, 1413, 1438
AfeI AGCGCT 1 cut(s) 129
AfiI CCNNNNNNNGG 5 cut(s) 86, 276, 298, 422, 1211
AjnI CCWGG 2 cut(s) 498, 1260
AjuI GAANNNNNNNTTGG 6 cut(s) 279, 311, 334, 366, 1028, 1060
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 8 cut(s) 11, 86, 108, 527, 761, 1285, 1306, 1477
AluI AGCT 8 cut(s) 11, 86, 108, 527, 761, 1285, 1306, 1477
Alw26I GTCTC 1 cut(s) 625
AlwI GGATC 2 cut(s) 231, 447
Ama87I CYCGRG 1 cut(s) 96
Aor51HI AGCGCT 1 cut(s) 129
AoxI GGCC 2 cut(s) 69, 843
ApeKI GCWGC 2 cut(s) 105, 1477
ApoI RAATTY 2 cut(s) 154, 342
AspLEI GCGC 2 cut(s) 130, 816
AspS9I GGNCC 2 cut(s) 718, 844
AsuHPI GGTGA 3 cut(s) 676, 776, 1232
AsuNHI GCTAGC 1 cut(s) 1132
AvaI CYCGRG 1 cut(s) 96
AvaII GGWCC 1 cut(s) 718
BauI CACGAG 1 cut(s) 560
BbvI GCAGC 2 cut(s) 117, 1464
BccI CCATC 3 cut(s) 66, 593, 897
BceAI ACGGC 1 cut(s) 1121
BcgI CGANNNNNNTGC 2 cut(s) 1327, 1361
BciT130I CCWGG 2 cut(s) 500, 1262
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 625
BfaI CTAG 5 cut(s) 422, 1019, 1133, 1286, 1449
BfmI CTRYAG 2 cut(s) 21, 588
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 1072
BisI GCNGC 2 cut(s) 106, 1478
BlsI GCNGC 2 cut(s) 107, 1479
BmcAI AGTACT 1 cut(s) 541
Bme1390I CCNGG 2 cut(s) 500, 1262
Bme18I GGWCC 1 cut(s) 718
BmeT110I CYCGRG 1 cut(s) 96
BmgT120I GGNCC 2 cut(s) 718, 844
BmiI GGNNCC 1 cut(s) 846
BmrFI CCNGG 2 cut(s) 500, 1262
BmrI ACTGGG 1 cut(s) 1323
BmsI GCATC 2 cut(s) 110, 904
BmtI GCTAGC 1 cut(s) 1136
BmuI ACTGGG 1 cut(s) 1323
BpmI CTGGAG 1 cut(s) 1244
Bpu10I CCTNAGC 1 cut(s) 12
BpuEI CTTGAG 2 cut(s) 589, 1370
BsaBI GATNNNNATC 2 cut(s) 432, 438
BsaI GGTCTC 1 cut(s) 625
BsaJI CCNNGG 4 cut(s) 219, 498, 702, 1261
BsaWI WCCGGW 2 cut(s) 46, 1414
BsaXI ACNNNNNCTCC 2 cut(s) 698, 728
Bsc4I CCNNNNNNNGG 5 cut(s) 86, 276, 298, 422, 1211
Bse1I ACTGG 2 cut(s) 721, 1318
Bse3DI GCAATG 1 cut(s) 1084
Bse8I GATNNNNATC 2 cut(s) 432, 438
BseBI CCWGG 2 cut(s) 500, 1262
BseDI CCNNGG 4 cut(s) 219, 498, 702, 1261
BseJI GATNNNNATC 2 cut(s) 432, 438
BseLI CCNNNNNNNGG 5 cut(s) 86, 276, 298, 422, 1211
BseMI GCAATG 1 cut(s) 1084
BseMII CTCAG 2 cut(s) 26, 1188
BseNI ACTGG 2 cut(s) 721, 1318
BseRI GAGGAG 2 cut(s) 1304, 1473
BseXI GCAGC 2 cut(s) 117, 1464
BsgI GTGCAG 2 cut(s) 1009, 1129
BshFI GGCC 2 cut(s) 71, 845
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 2 cut(s) 47, 1415
BslI CCNNNNNNNGG 5 cut(s) 86, 276, 298, 422, 1211
BsmAI GTCTC 1 cut(s) 625
BsnI GGCC 2 cut(s) 71, 845
Bso31I GGTCTC 1 cut(s) 625
BsoBI CYCGRG 1 cut(s) 96
Bsp143I GATC 4 cut(s) 223, 433, 439, 1396
BspANI GGCC 2 cut(s) 71, 845
BspCNI CTCAG 2 cut(s) 25, 1189
BspLI GGNNCC 1 cut(s) 846
BspMI ACCTGC 1 cut(s) 1072
BspOI GCTAGC 1 cut(s) 1136
BspPI GGATC 2 cut(s) 231, 447
BspTNI GGTCTC 1 cut(s) 625
BsrDI GCAATG 1 cut(s) 1084
BsrI ACTGG 2 cut(s) 721, 1318
BssECI CCNNGG 4 cut(s) 219, 498, 702, 1261
BssMI GATC 4 cut(s) 223, 433, 439, 1396
BssSI CACGAG 1 cut(s) 560
BssT1I CCWWGG 2 cut(s) 219, 702
Bst2BI CACGAG 1 cut(s) 560
Bst2UI CCWGG 2 cut(s) 500, 1262
Bst4CI ACNGT 4 cut(s) 323, 629, 714, 1436
BstC8I GCNNGC 3 cut(s) 513, 1134, 1356
BstDEI CTNAG 3 cut(s) 12, 1197, 1281
BstEII GGTNACC 1 cut(s) 1294
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 2 cut(s) 130, 816
BstKTI GATC 4 cut(s) 226, 436, 442, 1399
BstMAI GTCTC 1 cut(s) 625
BstMBI GATC 4 cut(s) 223, 433, 439, 1396
BstMWI GCNNNNNNNGC 2 cut(s) 17, 996
BstNI CCWGG 2 cut(s) 500, 1262
BstNSI RCATGY 2 cut(s) 1348, 1358
BstPI GGTNACC 1 cut(s) 1294
BstSCI CCNGG 2 cut(s) 498, 1260
BstSFI CTRYAG 2 cut(s) 21, 588
BstV1I GCAGC 2 cut(s) 117, 1464
BsuRI GGCC 2 cut(s) 71, 845
BtsI GCAGTG 1 cut(s) 1006
BtsIMutI CAGTG 5 cut(s) 40, 319, 710, 1006, 1311
BveI ACCTGC 1 cut(s) 1072
Cac8I GCNNGC 3 cut(s) 513, 1134, 1356
CfoI GCGC 2 cut(s) 130, 816
Cfr13I GGNCC 2 cut(s) 718, 844
Csp6I GTAC 7 cut(s) 368, 490, 540, 1087, 1342, 1412, 1437
CviAII CATG 5 cut(s) 443, 505, 1211, 1345, 1355
CviQI GTAC 7 cut(s) 368, 490, 540, 1087, 1342, 1412, 1437
DdeI CTNAG 3 cut(s) 12, 1197, 1281
DpnI GATC 4 cut(s) 225, 435, 441, 1398
DpnII GATC 4 cut(s) 223, 433, 439, 1396
Eco130I CCWWGG 2 cut(s) 219, 702
Eco31I GGTCTC 1 cut(s) 625
Eco47I GGWCC 1 cut(s) 718
Eco47III AGCGCT 1 cut(s) 129
Eco57I CTGAAG 2 cut(s) 27, 875
Eco88I CYCGRG 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 1294
EcoO65I GGTNACC 1 cut(s) 1294
EcoRI GAATTC 1 cut(s) 342
EcoRII CCWGG 2 cut(s) 498, 1260
EcoT14I CCWWGG 2 cut(s) 219, 702
ErhI CCWWGG 2 cut(s) 219, 702
FaeI CATG 5 cut(s) 446, 508, 1214, 1348, 1358
FalI AAGNNNNNCTT 2 cut(s) 999, 1031
FatI CATG 5 cut(s) 442, 504, 1210, 1344, 1354
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 106, 1478
Fsp4HI GCNGC 2 cut(s) 106, 1478
FspBI CTAG 5 cut(s) 422, 1019, 1133, 1286, 1449
GlaI GCGC 2 cut(s) 129, 815
GluI GCNGC 2 cut(s) 106, 1478
GsuI CTGGAG 1 cut(s) 1244
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 2 cut(s) 71, 845
HapII CCGG 2 cut(s) 47, 1415
HhaI GCGC 2 cut(s) 130, 816
Hin1II CATG 5 cut(s) 446, 508, 1214, 1348, 1358
Hin6I GCGC 2 cut(s) 128, 814
HinP1I GCGC 2 cut(s) 128, 814
HinfI GANTC 7 cut(s) 30, 161, 176, 355, 479, 707, 803
HpaII CCGG 2 cut(s) 47, 1415
HphI GGTGA 3 cut(s) 676, 776, 1232
Hpy166II GTNNAC 4 cut(s) 25, 38, 180, 259
Hpy188I TCNGA 5 cut(s) 175, 808, 855, 864, 939
Hpy188III TCNNGA 6 cut(s) 329, 339, 437, 521, 1196, 1233
Hpy8I GTNNAC 4 cut(s) 25, 38, 180, 259
Hpy99I CGWCG 1 cut(s) 1491
HpyAV CCTTC 4 cut(s) 82, 86, 468, 1046
HpyCH4III ACNGT 4 cut(s) 323, 629, 714, 1436
HpyCH4IV ACGT 3 cut(s) 370, 741, 1182
HpyCH4V TGCA 7 cut(s) 123, 365, 404, 515, 612, 990, 1110
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 996
HpyF3I CTNAG 3 cut(s) 12, 1197, 1281
HpySE526I ACGT 3 cut(s) 370, 741, 1182
Hsp92II CATG 5 cut(s) 446, 508, 1214, 1348, 1358
HspAI GCGC 2 cut(s) 128, 814
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 4 cut(s) 223, 433, 439, 1396
LmnI GCTCC 1 cut(s) 532
Lsp1109I GCAGC 2 cut(s) 117, 1464
LweI GCATC 2 cut(s) 110, 904
MaeI CTAG 5 cut(s) 422, 1019, 1133, 1286, 1449
MaeII ACGT 3 cut(s) 370, 741, 1182
MaeIII GTNAC 7 cut(s) 91, 317, 583, 708, 1027, 1138, 1294
MalI GATC 4 cut(s) 225, 435, 441, 1398
MboI GATC 4 cut(s) 223, 433, 439, 1396
MboII GAAGA 4 cut(s) 605, 1004, 1007, 1381
MluCI AATT 9 cut(s) 154, 342, 516, 647, 771, 910, 1165, 1331, 1363
MlyI GAGTC 3 cut(s) 185, 488, 716
MmeI TCCRAC 3 cut(s) 183, 332, 654
MseI TTAA 6 cut(s) 152, 390, 494, 642, 1005, 1495
MslI CAYNNNNRTG 2 cut(s) 98, 1215
MspI CCGG 2 cut(s) 47, 1415
MspR9I CCNGG 2 cut(s) 500, 1262
MvaI CCWGG 2 cut(s) 500, 1262
MwoI GCNNNNNNNGC 2 cut(s) 17, 996
NdeII GATC 4 cut(s) 223, 433, 439, 1396
NheI GCTAGC 1 cut(s) 1132
NlaIII CATG 5 cut(s) 446, 508, 1214, 1348, 1358
NlaIV GGNNCC 1 cut(s) 846
NmuCI GTSAC 5 cut(s) 91, 317, 583, 708, 1138
NspI RCATGY 2 cut(s) 1348, 1358
OliI CACNNNNGTG 1 cut(s) 98
PaeI GCATGC 1 cut(s) 1358
PaeR7I CTCGAG 1 cut(s) 96
PaqCI CACCTGC 1 cut(s) 1072
PfeI GAWTC 4 cut(s) 30, 161, 355, 803
PflMI CCANNNNNTGG 1 cut(s) 276
PkrI GCNGC 2 cut(s) 107, 1479
PleI GAGTC 3 cut(s) 184, 487, 715
PpsI GAGTC 3 cut(s) 184, 487, 715
Psp6I CCWGG 2 cut(s) 498, 1260
PspEI GGTNACC 1 cut(s) 1294
PspGI CCWGG 2 cut(s) 498, 1260
PspN4I GGNNCC 1 cut(s) 846
PspPI GGNCC 2 cut(s) 718, 844
PspXI VCTCGAGB 1 cut(s) 96
PsrI GAACNNNNNNTAC 2 cut(s) 1420, 1452
RsaI GTAC 7 cut(s) 369, 491, 541, 1088, 1343, 1413, 1438
RsaNI GTAC 7 cut(s) 368, 490, 540, 1087, 1342, 1412, 1437
RseI CAYNNNNRTG 2 cut(s) 98, 1215
SaqAI TTAA 6 cut(s) 152, 390, 494, 642, 1005, 1495
SatI GCNGC 2 cut(s) 106, 1478
Sau3AI GATC 4 cut(s) 223, 433, 439, 1396
Sau96I GGNCC 2 cut(s) 718, 844
ScaI AGTACT 1 cut(s) 541
SchI GAGTC 3 cut(s) 185, 488, 716
ScrFI CCNGG 2 cut(s) 500, 1262
SfaNI GCATC 2 cut(s) 110, 904
SfcI CTRYAG 2 cut(s) 21, 588
Sfr274I CTCGAG 1 cut(s) 96
SinI GGWCC 1 cut(s) 718
SlaI CTCGAG 1 cut(s) 96
SmiMI CAYNNNNRTG 2 cut(s) 98, 1215
SmlI CTYRAG 3 cut(s) 96, 568, 1349
SmoI CTYRAG 3 cut(s) 96, 568, 1349
SphI GCATGC 1 cut(s) 1358
Sse9I AATT 9 cut(s) 154, 342, 516, 647, 771, 910, 1165, 1331, 1363
SspI AATATT 1 cut(s) 838
SspMI CTAG 5 cut(s) 422, 1019, 1133, 1286, 1449
StyD4I CCNGG 2 cut(s) 498, 1260
StyI CCWWGG 2 cut(s) 219, 702
TaaI ACNGT 4 cut(s) 323, 629, 714, 1436
TaiI ACGT 3 cut(s) 373, 744, 1185
TaqI TCGA 2 cut(s) 97, 159
TaqII GACCGA 1 cut(s) 706
TasI AATT 9 cut(s) 154, 342, 516, 647, 771, 910, 1165, 1331, 1363
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 4 cut(s) 30, 161, 355, 803
Tru1I TTAA 6 cut(s) 152, 390, 494, 642, 1005, 1495
Tru9I TTAA 6 cut(s) 152, 390, 494, 642, 1005, 1495
TscAI CASTG 5 cut(s) 40, 326, 717, 1006, 1318
TseFI GTSAC 5 cut(s) 91, 317, 583, 708, 1138
TseI GCWGC 2 cut(s) 105, 1477
Tsp45I GTSAC 5 cut(s) 91, 317, 583, 708, 1138
TspDTI ATGAA 5 cut(s) 122, 153, 521, 923, 1199
TspGWI ACGGA 2 cut(s) 1438, 1486
TspRI CASTG 5 cut(s) 40, 326, 717, 1006, 1318
Van91I CCANNNNNTGG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 718
XapI RAATTY 2 cut(s) 154, 342
XceI RCATGY 2 cut(s) 1348, 1358
XcmI CCANNNNNNNNNTGG 1 cut(s) 896
XhoI CTCGAG 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 5 cut(s) 422, 1019, 1133, 1286, 1449
ZrmI AGTACT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.