MD14G1025800.v1.1

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
2353185 .. 2355199
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1025800.v1.1.491

Sequence Viewer

Length: 1527 bp
ATGGAACCCCTTGCTGAAGGTGCTTCTGCCAATCTAAATGTCACTTTGGACAGGTTCAGTGCTCTTCCACGCGAAGTTGCTCATCACATTTTGTCATTACTTCCCATATCCGACATCACTCGAGTTGGCATGTTATCCCAAAAATGCAGAGCCTTTTATCTGTCGACTCCCACATTGAACTTCACTGAATTCCCCTCGGAGTCCACTCGCACCTTCAACAGCCGTTTGGAGTTGATGGCTTCCTTGGACAAGTTCTTCATGCGTCGCCACCATAACAAGGTACAAAGCTTTTCTCTGGATTGGGTTTCTGAGTTCGAACTTGGGGAAACAGATATTGAAAGTTGCTGCTCTGTTGAAAAATCTAGGGTTTTGGGTTGGATTGAAAATGCACTGACTTGCAACGTTGAAAAGCTTGATTATTTCTTTACAACTGTGATGCCAACCCTAGACGATATTATTAGCGAGACCCAGATAGATTTTCCTTCATCTGTGTTTGTTTCTGGGTCTCTGAGGTCTCTTTCTCTAGATATGAAGTGTGCAACTCTTAAAGCTTCCACATTTTCTGCATCTTCTATCTGTAATCTGGTTTTTCTGAAGCTGAGAAGTGTTACCATGGAAGATGATGAGGGTTTTTGCAAATGGATCTGCTTCTGCTGCAGAAATATTAAGGAGTTGAGGCTCGAGTGTGTGATAGGGTTACGAAAAATCGACATTGAGAGTTCGTCTTTGGAATCATTTGGTGTTGAGTGTCCCTCTTGTTATGATCTTTGCCATGTTAAAATCTCTGGTGAGAAAGTTGAAGATGTGCATATAAATTGGAATTTTAATGCTCCATTGCCTCGGACGAATTCGTTGGAGATTTTCGCTCCAAATCTTAAGCGTTTGAATTGGGTTGGTTATATGATGAATCACCAGAATCTGGGGGAGTTGAATTGTTTGGAAGAAGTTCAGATTTCTCTCATGGCTGATGGAGTAGATGATCCTGAAAGCAAAATACATGAGTTCCTCTCTAGCATTCGCAGTGCTAAAACACTCCGTATTGATCAAGGGACTACAAAGAATCTGTTCAAGGATGGTTACACACCCCCAATATTACATGAACTCTGTTACTTGAATGTGACTATTTGGAGCGGTATCGATGACAAGGTTGTCCCGGCGCTGGCCTCACTTTTTAAAGGACTCCCTAATTTGACTACTTTGGAATTGACGGTATCTGATCAGTTACCCTTCTTCTTTCGCACTGCAAATGCGGCTACTTCATCTGAATTCGATAGGCGATATTGGGAACGCCAGCACCTGGAGTTTGTTTCTCAGTTGAAGTATGCAATCATAGAGCTTACTAACGGGTCTAATGGATTCGTGCTTGCAAAGTATCTGCTTGAACGTGCTCAGAATTTGGAGGAAATGCTTGTGATTTGCCTGCCCAATCAATGGAATTTCGCAAGGAAGTTGAGGAGCAGCCGGATTATTTCTTCCAATGCTGCAGTTGGCTATCTGGAAAAAAGTGGGGGTCGTACAGGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

57.56

Weight (kDa)

5.46

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1148
AccB7I CCANNNNNTGG 3 cut(s) 919, 1297, 1431
AccBSI CCGCTC 1 cut(s) 1131
AccI GTMKAC 1 cut(s) 164
AccII CGCG 1 cut(s) 72
AciI CCGC 2 cut(s) 1131, 1250
AclI AACGTT 1 cut(s) 402
AclWI GGATC 2 cut(s) 650, 974
AcsI RAATTY 6 cut(s) 188, 820, 847, 1265, 1393, 1435
AcuI CTGAAG 2 cut(s) 36, 614
AfaI GTAC 2 cut(s) 282, 1516
AfiI CCNNNNNNNGG 5 cut(s) 277, 919, 1159, 1297, 1431
AflII CTTAAG 1 cut(s) 875
AjnI CCWGG 1 cut(s) 1296
AluBI AGCT 5 cut(s) 288, 412, 551, 598, 1336
AluI AGCT 5 cut(s) 288, 412, 551, 598, 1336
Alw21I GWGCWC 2 cut(s) 64, 1390
Alw26I GTCTC 3 cut(s) 458, 510, 519
AlwI GGATC 2 cut(s) 650, 974
AlwNI CAGNNNCTG 2 cut(s) 919, 1297
Ama87I CYCGRG 2 cut(s) 120, 680
AoxI GGCC 1 cut(s) 1161
ApeKI GCWGC 4 cut(s) 345, 654, 1458, 1481
ApoI RAATTY 6 cut(s) 188, 820, 847, 1265, 1393, 1435
Asp700I GAANNNNTTC 2 cut(s) 945, 1064
AspLEI GCGC 1 cut(s) 1159
AsuC2I CCSGG 1 cut(s) 1154
AsuHPI GGTGA 2 cut(s) 800, 902
AsuII TTCGAA 1 cut(s) 315
AvaI CYCGRG 2 cut(s) 120, 680
Bbv12I GWGCWC 2 cut(s) 64, 1390
BbvI GCAGC 4 cut(s) 332, 641, 1468, 1470
BccI CCATC 3 cut(s) 229, 962, 1067
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 1298
BclI TGATCA 2 cut(s) 1042, 1216
BcnI CCSGG 1 cut(s) 1154
BcoDI GTCTC 3 cut(s) 458, 510, 519
BfaI CTAG 4 cut(s) 363, 446, 524, 1011
BfmI CTRYAG 2 cut(s) 655, 1482
BfoI RGCGCY 1 cut(s) 1160
BfrI CTTAAG 1 cut(s) 875
BisI GCNGC 5 cut(s) 346, 655, 1251, 1459, 1482
BlsI GCNGC 5 cut(s) 347, 656, 1252, 1460, 1483
Bme1390I CCNGG 2 cut(s) 1154, 1298
BmeT110I CYCGRG 2 cut(s) 120, 680
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 1154, 1298
BmsI GCATC 2 cut(s) 426, 575
BplI GAGNNNNNCTC 4 cut(s) 737, 769, 992, 1024
BpmI CTGGAG 1 cut(s) 1319
Bpu14I TTCGAA 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 1154
Bsa29I ATCGAT 1 cut(s) 1137
BsaI GGTCTC 3 cut(s) 458, 510, 519
BsaJI CCNNGG 4 cut(s) 195, 243, 612, 839
Bsc4I CCNNNNNNNGG 5 cut(s) 277, 919, 1159, 1297, 1431
Bse3DI GCAATG 1 cut(s) 833
BseBI CCWGG 1 cut(s) 1298
BseCI ATCGAT 1 cut(s) 1137
BseDI CCNNGG 4 cut(s) 195, 243, 612, 839
BseGI GGATG 1 cut(s) 1078
BseLI CCNNNNNNNGG 5 cut(s) 277, 919, 1159, 1297, 1431
BseMI GCAATG 1 cut(s) 833
BseMII CTCAG 5 cut(s) 300, 500, 590, 1325, 1403
BseRI GAGGAG 1 cut(s) 1468
BseXI GCAGC 4 cut(s) 332, 641, 1468, 1470
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 1 cut(s) 1163
BshVI ATCGAT 1 cut(s) 1137
BsiHKAI GWGCWC 2 cut(s) 64, 1390
BsiHKCI CYCGRG 2 cut(s) 120, 680
BsiSI CCGG 2 cut(s) 1154, 1462
BslFI GGGAC 3 cut(s) 735, 1063, 1136
BslI CCNNNNNNNGG 5 cut(s) 277, 919, 1159, 1297, 1431
BsmAI GTCTC 3 cut(s) 458, 510, 519
BsmFI GGGAC 3 cut(s) 735, 1063, 1136
BsmI GAATGC 1 cut(s) 1014
BsnI GGCC 1 cut(s) 1163
Bso31I GGTCTC 3 cut(s) 458, 510, 519
BsoBI CYCGRG 2 cut(s) 120, 680
Bsp119I TTCGAA 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 64, 1390
Bsp143I GATC 5 cut(s) 642, 763, 979, 1042, 1216
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 2 cut(s) 1131, 1250
BspANI GGCC 1 cut(s) 1163
BspCNI CTCAG 5 cut(s) 301, 501, 591, 1324, 1402
BspDI ATCGAT 1 cut(s) 1137
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 2 cut(s) 659, 1486
BspPI GGATC 2 cut(s) 650, 974
BspQI GCTCTTC 1 cut(s) 69
BspT104I TTCGAA 1 cut(s) 315
BspTI CTTAAG 1 cut(s) 875
BspTNI GGTCTC 3 cut(s) 458, 510, 519
BsrBI CCGCTC 1 cut(s) 1131
BsrDI GCAATG 1 cut(s) 833
BssECI CCNNGG 4 cut(s) 195, 243, 612, 839
BssMI GATC 5 cut(s) 642, 763, 979, 1042, 1216
BssT1I CCWWGG 2 cut(s) 243, 612
Bst2UI CCWGG 1 cut(s) 1298
Bst4CI ACNGT 2 cut(s) 433, 1210
Bst6I CTCTTC 1 cut(s) 69
BstAFI CTTAAG 1 cut(s) 875
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 4 cut(s) 1161, 1292, 1365, 1421
BstDEI CTNAG 5 cut(s) 309, 509, 599, 1311, 1389
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 1 cut(s) 1078
BstFNI CGCG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 1160
BstHHI GCGC 1 cut(s) 1159
BstKTI GATC 5 cut(s) 645, 766, 982, 1045, 1219
BstMAI GTCTC 3 cut(s) 458, 510, 519
BstMBI GATC 5 cut(s) 642, 763, 979, 1042, 1216
BstMWI GCNNNNNNNGC 3 cut(s) 20, 654, 1250
BstNI CCWGG 1 cut(s) 1298
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 2 cut(s) 1152, 1296
BstSFI CTRYAG 2 cut(s) 655, 1482
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 4 cut(s) 332, 641, 1468, 1470
BstX2I RGATCY 1 cut(s) 642
BstYI RGATCY 1 cut(s) 642
Bsu15I ATCGAT 1 cut(s) 1137
BsuRI GGCC 1 cut(s) 1163
BsuTUI ATCGAT 1 cut(s) 1137
BtgI CCRYGG 1 cut(s) 612
BtsCI GGATG 1 cut(s) 1078
BtsI GCAGTG 2 cut(s) 1027, 1239
BtsIMutI CAGTG 5 cut(s) 64, 183, 389, 1027, 1239
Cac8I GCNNGC 4 cut(s) 1161, 1292, 1365, 1421
CaiI CAGNNNCTG 2 cut(s) 919, 1297
CfoI GCGC 1 cut(s) 1159
ClaI ATCGAT 1 cut(s) 1137
CseI GACGC 1 cut(s) 251
Csp6I GTAC 2 cut(s) 281, 1515
CviAII CATG 7 cut(s) 130, 259, 613, 773, 961, 998, 1097
CviQI GTAC 2 cut(s) 281, 1515
DdeI CTNAG 5 cut(s) 309, 509, 599, 1311, 1389
DpnI GATC 5 cut(s) 644, 765, 981, 1044, 1218
DpnII GATC 5 cut(s) 642, 763, 979, 1042, 1216
DraI TTTAAA 1 cut(s) 1174
DrdI GACNNNNNNGTC 1 cut(s) 1148
DseDI GACNNNNNNGTC 1 cut(s) 1148
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 243, 612
Eco31I GGTCTC 3 cut(s) 458, 510, 519
Eco57I CTGAAG 2 cut(s) 36, 614
Eco88I CYCGRG 2 cut(s) 120, 680
EcoRI GAATTC 3 cut(s) 188, 847, 1265
EcoRII CCWGG 1 cut(s) 1296
EcoT14I CCWWGG 2 cut(s) 243, 612
ErhI CCWWGG 2 cut(s) 243, 612
FaeI CATG 7 cut(s) 133, 262, 616, 776, 964, 1001, 1100
FaqI GGGAC 3 cut(s) 735, 1063, 1136
FatI CATG 7 cut(s) 129, 258, 612, 772, 960, 997, 1096
FbaI TGATCA 2 cut(s) 1042, 1216
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 5 cut(s) 346, 655, 1251, 1459, 1482
FokI GGATG 1 cut(s) 1085
Fsp4HI GCNGC 5 cut(s) 346, 655, 1251, 1459, 1482
FspBI CTAG 4 cut(s) 363, 446, 524, 1011
GlaI GCGC 1 cut(s) 1158
GluI GCNGC 5 cut(s) 346, 655, 1251, 1459, 1482
GsuI CTGGAG 1 cut(s) 1319
HaeII RGCGCY 1 cut(s) 1160
HaeIII GGCC 1 cut(s) 1163
HapII CCGG 2 cut(s) 1154, 1462
HgaI GACGC 1 cut(s) 251
HhaI GCGC 1 cut(s) 1159
Hin1II CATG 7 cut(s) 133, 262, 616, 776, 964, 1001, 1100
Hin6I GCGC 1 cut(s) 1157
HinP1I GCGC 1 cut(s) 1157
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 3 cut(s) 286, 410, 549
HinfI GANTC 8 cut(s) 166, 200, 731, 907, 916, 1060, 1179, 1356
HpaII CCGG 2 cut(s) 1154, 1462
HphI GGTGA 2 cut(s) 800, 902
Hpy166II GTNNAC 2 cut(s) 165, 204
Hpy188III TCNNGA 4 cut(s) 296, 524, 983, 1496
Hpy8I GTNNAC 2 cut(s) 165, 204
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 4 cut(s) 11, 223, 492, 1237
HpyCH4III ACNGT 2 cut(s) 433, 1210
HpyCH4IV ACGT 2 cut(s) 402, 1384
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 654, 1250
HpyF3I CTNAG 5 cut(s) 309, 509, 599, 1311, 1389
HpySE526I ACGT 2 cut(s) 402, 1384
Hsp92II CATG 7 cut(s) 133, 262, 616, 776, 964, 1001, 1100
HspAI GCGC 1 cut(s) 1157
Ksp22I TGATCA 2 cut(s) 1042, 1216
Kzo9I GATC 5 cut(s) 642, 763, 979, 1042, 1216
LguI GCTCTTC 1 cut(s) 69
LmnI GCTCC 4 cut(s) 835, 871, 1128, 1455
Lsp1109I GCAGC 4 cut(s) 332, 641, 1468, 1470
LweI GCATC 2 cut(s) 426, 575
MaeI CTAG 4 cut(s) 363, 446, 524, 1011
MaeII ACGT 2 cut(s) 402, 1384
MaeIII GTNAC 7 cut(s) 40, 607, 696, 1076, 1106, 1117, 1221
MalI GATC 5 cut(s) 644, 765, 981, 1044, 1218
MbiI CCGCTC 1 cut(s) 1131
MboI GATC 5 cut(s) 642, 763, 979, 1042, 1216
MboII GAAGA 8 cut(s) 56, 247, 561, 629, 812, 953, 1222, 1464
MflI RGATCY 1 cut(s) 642
MhlI GDGCHC 2 cut(s) 64, 1390
MlyI GAGTC 3 cut(s) 160, 209, 1173
MmeI TCCRAC 3 cut(s) 135, 356, 834
MroXI GAANNNNTTC 2 cut(s) 945, 1064
MseI TTAA 6 cut(s) 546, 666, 777, 825, 876, 1173
MspCI CTTAAG 1 cut(s) 875
MspI CCGG 2 cut(s) 1154, 1462
MspR9I CCNGG 2 cut(s) 1154, 1298
Mva1269I GAATGC 1 cut(s) 1014
MvaI CCWGG 1 cut(s) 1298
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 20, 654, 1250
NciI CCSGG 1 cut(s) 1154
NcoI CCATGG 1 cut(s) 612
NdeII GATC 5 cut(s) 642, 763, 979, 1042, 1216
NlaIII CATG 7 cut(s) 133, 262, 616, 776, 964, 1001, 1100
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 40, 1117
NspI RCATGY 1 cut(s) 133
NspV TTCGAA 1 cut(s) 315
PaeR7I CTCGAG 2 cut(s) 120, 680
PciSI GCTCTTC 1 cut(s) 69
PctI GAATGC 1 cut(s) 1014
PdmI GAANNNNTTC 2 cut(s) 945, 1064
PfeI GAWTC 5 cut(s) 731, 907, 916, 1060, 1356
PflMI CCANNNNNTGG 3 cut(s) 919, 1297, 1431
PkrI GCNGC 5 cut(s) 347, 656, 1252, 1460, 1483
PleI GAGTC 3 cut(s) 160, 208, 1173
PpsI GAGTC 3 cut(s) 160, 208, 1173
Psp1406I AACGTT 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 1296
PspGI CCWGG 1 cut(s) 1296
PspN4I GGNNCC 1 cut(s) 6
PspXI VCTCGAGB 2 cut(s) 120, 680
PstI CTGCAG 2 cut(s) 659, 1486
PstNI CAGNNNCTG 2 cut(s) 919, 1297
PsuI RGATCY 1 cut(s) 642
RsaI GTAC 2 cut(s) 282, 1516
RsaNI GTAC 2 cut(s) 281, 1515
SalI GTCGAC 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 6 cut(s) 546, 666, 777, 825, 876, 1173
SatI GCNGC 5 cut(s) 346, 655, 1251, 1459, 1482
Sau3AI GATC 5 cut(s) 642, 763, 979, 1042, 1216
SchI GAGTC 3 cut(s) 160, 209, 1173
ScrFI CCNGG 2 cut(s) 1154, 1298
SduI GDGCHC 2 cut(s) 64, 1390
SfaNI GCATC 2 cut(s) 426, 575
SfcI CTRYAG 2 cut(s) 655, 1482
Sfr274I CTCGAG 2 cut(s) 120, 680
SfuI TTCGAA 1 cut(s) 315
SlaI CTCGAG 2 cut(s) 120, 680
SmlI CTYRAG 3 cut(s) 120, 680, 875
SmoI CTYRAG 3 cut(s) 120, 680, 875
SsiI CCGC 2 cut(s) 1131, 1250
SspI AATATT 2 cut(s) 664, 1092
SspMI CTAG 4 cut(s) 363, 446, 524, 1011
StyD4I CCNGG 2 cut(s) 1152, 1296
StyI CCWWGG 2 cut(s) 243, 612
TaaI ACNGT 2 cut(s) 433, 1210
TaiI ACGT 2 cut(s) 405, 1387
TaqI TCGA 7 cut(s) 121, 164, 315, 681, 708, 1137, 1269
TauI GCSGC 1 cut(s) 1253
TfiI GAWTC 5 cut(s) 731, 907, 916, 1060, 1356
Tru1I TTAA 6 cut(s) 546, 666, 777, 825, 876, 1173
Tru9I TTAA 6 cut(s) 546, 666, 777, 825, 876, 1173
TscAI CASTG 5 cut(s) 64, 190, 396, 1027, 1246
TseFI GTSAC 2 cut(s) 40, 1117
TseI GCWGC 4 cut(s) 345, 654, 1458, 1481
Tsp45I GTSAC 2 cut(s) 40, 1117
TspDTI ATGAA 6 cut(s) 247, 474, 545, 920, 1113, 1248
TspGWI ACGGA 1 cut(s) 1025
TspRI CASTG 5 cut(s) 64, 190, 396, 1027, 1246
Van91I CCANNNNNTGG 3 cut(s) 919, 1297, 1431
Vha464I CTTAAG 1 cut(s) 875
XapI RAATTY 6 cut(s) 188, 820, 847, 1265, 1393, 1435
XbaI TCTAGA 1 cut(s) 523
XceI RCATGY 1 cut(s) 133
XhoI CTCGAG 2 cut(s) 120, 680
XmiI GTMKAC 1 cut(s) 164
XmnI GAANNNNTTC 2 cut(s) 945, 1064
XspI CTAG 4 cut(s) 363, 446, 524, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.