Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003953

Physical Location & Seq

Genomic Coordinates Forward (+)

11253568 .. 11254955

Gene Structure 1388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12363.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTGGGTCTCCTACTGTTGTAGGTTCATTAAGGAATTGAGGCTGCATTGGATTCGTGGTTTGGATAACATCACCATTGAAAGTTCGTCTTTGGAGTACTTCTTGATCGAGGCAATGTGGGTTCATAATATTGATCGGCTTGTAATTGCTGGTGATAGAGTTGAAGAAATATATATTCATATACCCAATCACAAGAACAAAAGTTGGTTGAATATTTCGGCACCAAATCTCAAATATCTGAAATTTATCAGGAAAATGTGGGATCATCAGCATCTTGGGGAAATGAATTGTTTGGAACAAGTTGAGATTTCCCTGACTTCTTATGGTTTGGAGTCCCATGATTTGGATAGCGTTTGTGAGCAGTTCCTGTGCAGTATAAGCAGGGTTAAAGTTCTTATTCTAGACCAAGTGACTGCCAAGACTTTGTTCAGGGAAGGATTGACATCTGCTCAGTTGGGCAATCTTTGGTACTTGCTTATGTCTATTCAGTGCAGTGTTGATGACAACCTTGTGCCAGCCATGACCTCTCTATTTAGGGCCGTTCCTAATTTGACTACTTTGAATGTGTCATCTTCTCCTCATTTTCCTATTCCACATGTTTGTGACCGCGATGATAATATATCTGGATTTGATAGGGGATATTGGGAACTCCAGGGCCTTGATTTTTTTTCTAAGCTAGAGGAGGTAACCATAGGGCTTACTACAGGATCCAATGGATTTGAATTAGCAAGGTATATTCTCGAGCATGCTCCTAATTTGAAGAAACTGTCTGTTATTACTAGACCTGATCAATCAAGTTCGGTACCGGATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like FBD

Protein Analysis

272

Amino Acids

31.13

Weight (kDa)

5.55

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g19053 FvH4_6g19370 FvH4_6g22710 FvH4_6g22710 FvH4_6g33902 FvH4_7g12363
malus_domestica	MD14G1025800.v1.1
pyrus_communis	pycom14g02500
rosa_chinensis	RchiOBHm_Chr3g0481121
rosa_laevigata	RLG00000023419 RLG00000023953
rosa_multiflora	Rmu_sc0001551.1_g000014 Rmu_sc0001551.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400620 Rroxscaffold_6G00407510
rosa_rugosa	Rorug03G0138200 Rorug03G0138500 Rorug03G0138600
rosa_samantha	Rh3AG188300 Rh3AG188400 Rh3AG240700 Rh3AG316900 Rh3BG217200 Rh3BG217400 Rh3BG217600 Rh3BG276400 Rh3CG213300 Rh3CG213500 Rh3DG267800 Rh7DG163400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	802
AccB1I	GGYRCC	2 cut(s)	220, 802
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccII	CGCG	1 cut(s)	609
AciI	CCGC	1 cut(s)	607
AclWI	GGATC	3 cut(s)	270, 702, 715
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	3 cut(s)	98, 470, 804
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflIII	ACRYGT	1 cut(s)	595
AgsI	TTSAA	6 cut(s)	80, 164, 211, 562, 722, 760
AjnI	CCWGG	1 cut(s)	651
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	1 cut(s)	676
AluI	AGCT	1 cut(s)	676
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	3 cut(s)	270, 702, 715
AlwNI	CAGNNNCTG	1 cut(s)	367
Ama87I	CYCGRG	1 cut(s)	740
AoxI	GGCC	2 cut(s)	537, 655
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	242
Asp718I	GGTACC	1 cut(s)	802
AspS9I	GGNCC	2 cut(s)	537, 655
AsuHPI	GGTGA	2 cut(s)	64, 164
AvaI	CYCGRG	1 cut(s)	740
BamHI	GGATCC	1 cut(s)	707
BanI	GGYRCC	2 cut(s)	220, 802
BbvI	GCAGC	1 cut(s)	30
BceAI	ACGGC	1 cut(s)	524
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	1 cut(s)	653
BclI	TGATCA	1 cut(s)	787
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	3 cut(s)	401, 677, 780
BfmI	CTRYAG	1 cut(s)	702
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
BmcAI	AGTACT	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	653
BmeT110I	CYCGRG	1 cut(s)	740
BmgT120I	GGNCC	2 cut(s)	537, 655
BmiI	GGNNCC	3 cut(s)	222, 709, 804
BmrFI	CCNGG	1 cut(s)	653
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	635
BsaBI	GATNNNNATC	1 cut(s)	442
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	652
BsaWI	WCCGGW	1 cut(s)	805
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	1 cut(s)	652
BseJI	GATNNNNATC	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	464
BseRI	GAGGAG	2 cut(s)	567, 695
BseXI	GCAGC	1 cut(s)	30
BsgI	GTGCAG	2 cut(s)	391, 511
Bsh1236I	CGCG	1 cut(s)	609
BshFI	GGCC	2 cut(s)	539, 657
BshNI	GGYRCC	2 cut(s)	220, 802
BsiHKCI	CYCGRG	1 cut(s)	740
BsiSI	CCGG	1 cut(s)	806
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	539, 657
Bso31I	GGTCTC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	740
Bsp143I	GATC	5 cut(s)	105, 133, 262, 707, 787
BspACI	CCGC	1 cut(s)	607
BspANI	GGCC	2 cut(s)	539, 657
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	1 cut(s)	609
BspLI	GGNNCC	3 cut(s)	222, 709, 804
BspPI	GGATC	3 cut(s)	270, 702, 715
BspT107I	GGYRCC	2 cut(s)	220, 802
BspTNI	GGTCTC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	652
BssMI	GATC	5 cut(s)	105, 133, 262, 707, 787
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	2 cut(s)	17, 768
BstC8I	GCNNGC	2 cut(s)	516, 747
BstDEI	CTNAG	2 cut(s)	450, 672
BstEII	GGTNACC	1 cut(s)	685
BstFNI	CGCG	1 cut(s)	609
BstKTI	GATC	5 cut(s)	108, 136, 265, 710, 790
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	5 cut(s)	105, 133, 262, 707, 787
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	1 cut(s)	653
BstNSI	RCATGY	2 cut(s)	599, 749
BstPI	GGTNACC	1 cut(s)	685
BstSCI	CCNGG	1 cut(s)	651
BstSFI	CTRYAG	1 cut(s)	702
BstUI	CGCG	1 cut(s)	609
BstV1I	GCAGC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	707
BstYI	RGATCY	1 cut(s)	707
BsuRI	GGCC	2 cut(s)	539, 657
BtgZI	GCGATG	1 cut(s)	624
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	494, 499
Cac8I	GCNNGC	2 cut(s)	516, 747
CaiI	CAGNNNCTG	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	537, 655
Csp6I	GTAC	3 cut(s)	97, 469, 803
CviAII	CATG	4 cut(s)	338, 520, 596, 746
CviJI	RGCY	7 cut(s)	43, 139, 518, 539, 657, 676, 697
CviKI_1	RGCY	7 cut(s)	43, 139, 518, 539, 657, 676, 697
CviQI	GTAC	3 cut(s)	97, 469, 803
DdeI	CTNAG	2 cut(s)	450, 672
DpnI	GATC	5 cut(s)	107, 135, 264, 709, 789
DpnII	GATC	5 cut(s)	105, 133, 262, 707, 787
Eco31I	GGTCTC	1 cut(s)	13
Eco88I	CYCGRG	1 cut(s)	740
Eco91I	GGTNACC	1 cut(s)	685
EcoO109I	RGGNCCY	1 cut(s)	655
EcoO65I	GGTNACC	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	651
FaeI	CATG	4 cut(s)	341, 523, 599, 749
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	4 cut(s)	337, 519, 595, 745
FbaI	TGATCA	1 cut(s)	787
Fnu4HI	GCNGC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	3 cut(s)	401, 677, 780
GluI	GCNGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	2 cut(s)	539, 657
HapII	CCGG	1 cut(s)	806
Hin1II	CATG	4 cut(s)	341, 523, 599, 749
HinfI	GANTC	2 cut(s)	52, 332
HpaII	CCGG	1 cut(s)	806
HphI	GGTGA	2 cut(s)	64, 164
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	5 cut(s)	103, 250, 401, 624, 740
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	2 cut(s)	17, 768
HpyCH4V	TGCA	3 cut(s)	46, 372, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	2 cut(s)	450, 672
Hsp92II	CATG	4 cut(s)	341, 523, 599, 749
KpnI	GGTACC	1 cut(s)	806
Ksp22I	TGATCA	1 cut(s)	787
Kzo9I	GATC	5 cut(s)	105, 133, 262, 707, 787
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	3 cut(s)	401, 677, 780
MaeIII	GTNAC	3 cut(s)	409, 602, 685
MalI	GATC	5 cut(s)	107, 135, 264, 709, 789
MboI	GATC	5 cut(s)	105, 133, 262, 707, 787
MboII	GAAGA	3 cut(s)	176, 564, 772
MflI	RGATCY	1 cut(s)	707
MluCI	AATT	7 cut(s)	35, 144, 242, 286, 547, 722, 754
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	6 cut(s)	33, 103, 535, 588, 673, 676
MseI	TTAA	2 cut(s)	30, 387
MslI	CAYNNNNRTG	1 cut(s)	600
MspI	CCGG	1 cut(s)	806
MspR9I	CCNGG	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	1 cut(s)	609
MwoI	GCNNNNNNNGC	1 cut(s)	378
NdeII	GATC	5 cut(s)	105, 133, 262, 707, 787
NlaIII	CATG	4 cut(s)	341, 523, 599, 749
NlaIV	GGNNCC	3 cut(s)	222, 709, 804
NmuCI	GTSAC	2 cut(s)	409, 602
NspI	RCATGY	2 cut(s)	599, 749
PaeI	GCATGC	1 cut(s)	749
PaeR7I	CTCGAG	1 cut(s)	740
PciI	ACATGT	1 cut(s)	595
PfeI	GAWTC	1 cut(s)	52
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PscI	ACATGT	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	651
PspEI	GGTNACC	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	3 cut(s)	222, 709, 804
PspPI	GGNCC	2 cut(s)	537, 655
PstNI	CAGNNNCTG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	707
RsaI	GTAC	3 cut(s)	98, 470, 804
RsaNI	GTAC	3 cut(s)	97, 469, 803
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	2 cut(s)	30, 387
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	5 cut(s)	105, 133, 262, 707, 787
Sau96I	GGNCC	2 cut(s)	537, 655
ScaI	AGTACT	1 cut(s)	98
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	653
SetI	ASST	7 cut(s)	26, 510, 527, 678, 687, 734, 787
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	702
Sfr274I	CTCGAG	1 cut(s)	740
SlaI	CTCGAG	1 cut(s)	740
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SphI	GCATGC	1 cut(s)	749
Sse9I	AATT	7 cut(s)	35, 144, 242, 286, 547, 722, 754
SsiI	CCGC	1 cut(s)	607
SspI	AATATT	2 cut(s)	130, 214
SspMI	CTAG	3 cut(s)	401, 677, 780
StyD4I	CCNGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	17, 768
TaqI	TCGA	2 cut(s)	108, 741
TasI	AATT	7 cut(s)	35, 144, 242, 286, 547, 722, 754
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	30, 387
Tru9I	TTAA	2 cut(s)	30, 387
TscAI	CASTG	2 cut(s)	494, 499
TseFI	GTSAC	2 cut(s)	409, 602
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	2 cut(s)	409, 602
TspDTI	ATGAA	4 cut(s)	16, 113, 167, 299
TspRI	CASTG	2 cut(s)	494, 499
Van91I	CCANNNNNTGG	1 cut(s)	343
XapI	RAATTY	1 cut(s)	242
XbaI	TCTAGA	1 cut(s)	400
XceI	RCATGY	2 cut(s)	599, 749
XhoI	CTCGAG	1 cut(s)	740
XspI	CTAG	3 cut(s)	401, 677, 780
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.