Rorug03G0138200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003953
Physical Location & Seq
Forward (+)
11341805 .. 11346840
5036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0138200.1

Sequence Viewer

Length: 2436 bp
ATGATTTTCTCCAGCGGCGGACGCCTGCTCTCTCGCTCGGCTCGTTCCGCGTTCCAAAAGAACGTAATTTGGGTTAATTATAATGGAAGAGCTGCGCTTAGGCACGAACCGCCGACGCCGCTTGGCGGCAATGCGGGCATTTCCGGCGGGTTAGGGCTTCTGAGGGGGTATTTAACTTATAGTGGAGCTGGAAAGCAGCTCGTTTCGAATACCTACATGTCTAATTTGAAATCGGCTCTTGCAAACCCTAGGATTCGTCGCCTGTTCTCCAGCGAAAGGCCTGGGAAGAAAAATTACGAGAATTATTATCCGAAAGATAAGAAAGGGAATGATCAGAAATCCGGGTCGAAAGAAGGTGCTGGTGATCAAGGGAATACCCAGGGAAATTTTTCAAAGCAGATTCAAGATTTAATCACTCCTTTATTGTTCATGGGATTTATTTTCATATCGTTATTCCTTACTCCTCAGAAGCAGAAGCAGATAAGTTTCCAAGAATTTAAAAACAAGCTACTTGAACCTGGGTTGGTGGATCACATTGAAGTGGCAAATAAATCAGTTGCAAAAGTGTTTGTGAGAAGCTCCCCACGCACTCAAGATGTGAGTAGTGATGATTTTGTCAAGGGACCTGAAAACAGTTCTCCTTCCGGAGGAAATTTGAGCCAGTACAAGTACTATTTTAACATTGGGAGTGTTGACTCTTTTGAGGAAAAATTGGAGGAAGCCCAAGAAGCTTTAGGGATTGACCGTCATGATTTTGTTCCTGTAATTTATGTAGCGCAAATCAATTGGTTCCAAGAGCTGATGAAGTATGCGCCAACAATGTTGCTTTTGGGAGCTCTTTGGTTCATGGGGCGAAAAATGCCTGGTATTGGTGGCACAGGTGGAAAAGGTGGGAGAGGAATATTCAATATAGGAAAAGCACAGATAACAAAAGTGGATAAGAATGCCAAAAACAAGGTTTTCTTTAAAGATGTAGCTGGCTGTGATGAGGCTAAGCAAGAAATTATGGAATTTGTGCACTTTCTCAAGAACCCTAAGAAATATGAGGAATTGGGAGCAAAAATTCCAAAAGGTGCCCTTCTTGTTGGCCCTCCCGGAACTGGAAAAACTCTTATTGCAAAGGCAACTGCAGGTGAATCTGGGGTGCCATTTCTATCTATATCTGGTTCGGATTTTATGGAAATGTTTGTTGGTGTTGGGCCATCAAGGGTTCGGAGTTTATTTCAAGAGGCAAGACAATGTGCACCTAGTATAATATTTATTGATGAGATTGATGCGATTGGCCGGGCAAGAGGGCGTGGAGGCTTTTCAGGTGGCAATGATGAGCGAGAAAGTACTCTCAATCAATTGCTTGTAGAAATGGATGGATTTGGAACAACTGCTGGAGTTGTTGTACTTGCTGGGACCAATAGGCCTGATATTCTCGATAAAGCACTCTTGAGGCCTGGTCGGTTTGACCGTCAAATTACTATTGATAAACCAGACATTAAAGGTCGTAACCAGATTTTTCAGATATATCTGAAAAAGCTCAAATTAGATCGCGAACCATCCCATTACTCAGAGAGACTTGCTGCTCTGACTCCTGGATTCGCTGGAGCAGATATAGCAAATGTCTGCAATGAAGCTGCCTTGATTGCTGCAAGGAATGAGAGTGCGAAGATCACAATGAAACATTTTGAGGCAGCTATCGATCGGGTAATTGGCGGTCTTGAAAAGAAGAACAAGGTAATAAGCAAGCTGGAAAGACGGACTGTTGCTTACCATGAAGCTGGCCATGCTGTTGCTGGTTGGTTCTTAGAACATGCAGAACCTTTACTTAAAGTAACTATTGTTCCACGTGGCACTGCAGCACTGGGGTTTGCTCAGTATGTTCCCAATGAAAATCTTCTTATGACCAAAGAGCAGCTTTTTGATATGACATGCATGACCCTTGGTGGTCGAGCTTCTGAAGAGGTTTTGTTGGGGAAGATTTCAACTGGAGCACAGAACGACTTGGAGAAAGTGACCAAAATGACATATGCCCAAGTTGCAGTATATGGCTTCAGTGACAAAGTGGGCCTTCTTTCTTTTCCTCAAAGGGATGAATTTGAGATGACGAAGCCTTACAGTAGTAAGACTGGTGCAATAATTGACAGTGAAGTTAGAGAATGGGTTGCCAAAGCATATACCCGCACTATTGAGCTGATAGAGGAGCACAAGGAGCACGTAGGACAGATTGCAGAGCTGTTGCTGGAAAAGGAGGTCCTACACCAAGAAGACTTGATTCGAGTCTTGGGAGAGCGCCCATGGAAGTCGGAGGAGCCCACAAATTATGATATATTCAAGCAAGGGTTCCAAGAAGAAGAAGATAAGGAGGCTAAAGAGACAACCACTGAGGGTAAGGATGTGAAGGATGGTCGGTCACCACCTCTTCAACCAGATGCTGTGCCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

811

Amino Acids

89.48

Weight (kDa)

8.74

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FtsH_ext PF06480 141 - 249 1.1e-09 FtsH Extracellular
AAA PF00004 360 - 492 2.2e-42 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 521 - 561 3.7e-13 AAA+ lid domain
Peptidase_M41 PF01434 576 - 756 1e-64 Peptidase family M41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AarI CACCTGC 1 cut(s) 1121
Acc36I ACCTGC 1 cut(s) 1121
AccB1I GGYRCC 2 cut(s) 1073, 1144
AccII CGCG 2 cut(s) 50, 1542
AccIII TCCGGA 1 cut(s) 644
AclWI GGATC 1 cut(s) 537
AcoI YGGCCR 2 cut(s) 1282, 1771
AcsI RAATTY 6 cut(s) 385, 494, 652, 1010, 1062, 2084
AcuI CTGAAG 2 cut(s) 1968, 2026
AcvI CACGTG 1 cut(s) 1838
AcyI GRCGYC 2 cut(s) 22, 116
AfaI GTAC 4 cut(s) 665, 671, 1336, 1395
AfiI CCNNNNNNNGG 5 cut(s) 125, 276, 647, 869, 1100
AflIII ACRYGT 1 cut(s) 216
AjnI CCWGG 6 cut(s) 280, 378, 517, 862, 1444, 1582
AjuI GAANNNNNNNTTGG 2 cut(s) 1173, 1205
Alw21I GWGCWC 6 cut(s) 838, 1020, 1246, 1984, 2196, 2205
Alw26I GTCTC 2 cut(s) 1558, 2357
Alw44I GTGCAC 2 cut(s) 1016, 1242
AlwI GGATC 1 cut(s) 537
AlwNI CAGNNNCTG 1 cut(s) 2423
Aor13HI TCCGGA 1 cut(s) 644
AoxI GGCC 8 cut(s) 278, 1087, 1199, 1282, 1412, 1442, 1771, 2056
ApaLI GTGCAC 2 cut(s) 1016, 1242
ApeKI GCWGC 8 cut(s) 92, 196, 1571, 1625, 1637, 1682, 1847, 1903
ApoI RAATTY 6 cut(s) 385, 494, 652, 1010, 1062, 2084
Asp700I GAANNNNTTC 2 cut(s) 388, 1884
AspA2I CCTAGG 1 cut(s) 248
AspLEI GCGC 4 cut(s) 97, 778, 814, 2283
AspS9I GGNCC 6 cut(s) 623, 1088, 1199, 1404, 2056, 2242
AsuC2I CCSGG 3 cut(s) 343, 1095, 1286
AsuHPI GGTGA 3 cut(s) 374, 1145, 2394
AsuII TTCGAA 1 cut(s) 206
AvaII GGWCC 3 cut(s) 623, 1404, 2242
AvrII CCTAGG 1 cut(s) 248
BaeGI GKGCMC 3 cut(s) 1020, 1078, 1246
BalI TGGCCA 1 cut(s) 1773
BanI GGYRCC 2 cut(s) 1073, 1144
BanII GRGCYC 2 cut(s) 838, 2304
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BbrPI CACGTG 1 cut(s) 1838
BbsI GAAGAC 1 cut(s) 2262
Bbv12I GWGCWC 6 cut(s) 838, 1020, 1246, 1984, 2196, 2205
BbvI GCAGC 8 cut(s) 79, 208, 1558, 1612, 1624, 1694, 1859, 1915
BccI CCATC 4 cut(s) 1210, 1358, 1555, 2387
BciT130I CCWGG 6 cut(s) 282, 380, 519, 864, 1446, 1584
BclI TGATCA 2 cut(s) 331, 364
BcnI CCSGG 3 cut(s) 343, 1095, 1286
BcoDI GTCTC 2 cut(s) 1558, 2357
BfaI CTAG 2 cut(s) 249, 1248
BfmI CTRYAG 2 cut(s) 1128, 1845
BfoI RGCGCY 1 cut(s) 2284
BfuAI ACCTGC 1 cut(s) 1121
BlnI CCTAGG 1 cut(s) 248
BlpI GCTNAGC 1 cut(s) 993
BmcAI AGTACT 2 cut(s) 671, 1336
Bme1390I CCNGG 9 cut(s) 282, 343, 380, 519, 864, 1095, 1286, 1446, 1584
Bme18I GGWCC 3 cut(s) 623, 1404, 2242
BmgT120I GGNCC 6 cut(s) 623, 1088, 1199, 1404, 2056, 2242
BmiI GGNNCC 7 cut(s) 624, 791, 1075, 1146, 1405, 2301, 2333
BmrFI CCNGG 9 cut(s) 282, 343, 380, 519, 864, 1095, 1286, 1446, 1584
BmrI ACTGGG 1 cut(s) 1862
BmsI GCATC 2 cut(s) 1264, 2410
BmuI ACTGGG 1 cut(s) 1862
BpiI GAAGAC 1 cut(s) 2262
BpmI CTGGAG 4 cut(s) 253, 1404, 1614, 1998
Bpu10I CCTNAGC 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 993
Bpu14I TTCGAA 1 cut(s) 206
BpuEI CTTGAG 3 cut(s) 576, 1010, 1459
BpuMI CCSGG 3 cut(s) 343, 1095, 1286
Bsa29I ATCGAT 1 cut(s) 1689
BsaAI YACGTR 2 cut(s) 1838, 2206
BsaHI GRCGYC 2 cut(s) 22, 116
BsaJI CCNNGG 7 cut(s) 248, 281, 378, 379, 518, 1930, 2285
BsaWI WCCGGW 1 cut(s) 644
BsaXI ACNNNNNCTCC 2 cut(s) 1377, 1407
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 276, 647, 869, 1100
Bse1I ACTGG 5 cut(s) 661, 1105, 1857, 1981, 2122
Bse3DI GCAATG 3 cut(s) 136, 1324, 1624
BseAI TCCGGA 1 cut(s) 644
BseBI CCWGG 6 cut(s) 282, 380, 519, 864, 1446, 1584
BseCI ATCGAT 1 cut(s) 1689
BseDI CCNNGG 7 cut(s) 248, 281, 378, 379, 518, 1930, 2285
BseGI GGATG 5 cut(s) 1369, 1547, 2086, 2389, 2398
BseLI CCNNNNNNNGG 5 cut(s) 125, 276, 647, 869, 1100
BseMI GCAATG 3 cut(s) 136, 1324, 1624
BseMII CTCAG 5 cut(s) 152, 479, 1572, 1877, 2364
BseNI ACTGG 5 cut(s) 661, 1105, 1857, 1981, 2122
BseRI GAGGAG 3 cut(s) 453, 2204, 2312
BseSI GKGCMC 3 cut(s) 1020, 1078, 1246
BseXI GCAGC 8 cut(s) 79, 208, 1558, 1612, 1624, 1694, 1859, 1915
BseYI CCCAGC 1 cut(s) 1400
Bsh1236I CGCG 2 cut(s) 50, 1542
Bsh1285I CGRYCG 1 cut(s) 1693
BshFI GGCC 8 cut(s) 280, 1089, 1201, 1284, 1414, 1444, 1773, 2058
BshNI GGYRCC 2 cut(s) 1073, 1144
BshVI ATCGAT 1 cut(s) 1689
BsiEI CGRYCG 1 cut(s) 1693
BsiHKAI GWGCWC 6 cut(s) 838, 1020, 1246, 1984, 2196, 2205
BsiSI CCGG 5 cut(s) 144, 342, 645, 1095, 1285
BslFI GGGAC 2 cut(s) 636, 1417
BslI CCNNNNNNNGG 5 cut(s) 125, 276, 647, 869, 1100
BsmAI GTCTC 2 cut(s) 1558, 2357
BsmFI GGGAC 2 cut(s) 636, 1417
BsmI GAATGC 1 cut(s) 949
BsnI GGCC 8 cut(s) 280, 1089, 1201, 1284, 1414, 1444, 1773, 2058
Bsp119I TTCGAA 1 cut(s) 206
Bsp1286I GDGCHC 8 cut(s) 838, 1020, 1078, 1246, 1984, 2196, 2205, 2304
Bsp13I TCCGGA 1 cut(s) 644
Bsp143I GATC 6 cut(s) 331, 364, 529, 1537, 1659, 1690
Bsp1720I GCTNAGC 1 cut(s) 993
Bsp19I CCATGG 1 cut(s) 2285
Bsp68I TCGCGA 1 cut(s) 1542
BspANI GGCC 8 cut(s) 280, 1089, 1201, 1284, 1414, 1444, 1773, 2058
BspCNI CTCAG 5 cut(s) 153, 478, 1571, 1876, 2365
BspDI ATCGAT 1 cut(s) 1689
BspEI TCCGGA 1 cut(s) 644
BspFNI CGCG 2 cut(s) 50, 1542
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 7 cut(s) 624, 791, 1075, 1146, 1405, 2301, 2333
BspMAI CTGCAG 2 cut(s) 1132, 1849
BspMI ACCTGC 1 cut(s) 1121
BspPI GGATC 1 cut(s) 537
BspQI GCTCTTC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 206
BspT107I GGYRCC 2 cut(s) 1073, 1144
BsrDI GCAATG 3 cut(s) 136, 1324, 1624
BsrI ACTGG 5 cut(s) 661, 1105, 1857, 1981, 2122
BssECI CCNNGG 7 cut(s) 248, 281, 378, 379, 518, 1930, 2285
BssMI GATC 6 cut(s) 331, 364, 529, 1537, 1659, 1690
BssNI GRCGYC 2 cut(s) 22, 116
BssT1I CCWWGG 3 cut(s) 248, 1930, 2285
Bst2UI CCWGG 6 cut(s) 282, 380, 519, 864, 1446, 1584
Bst4CI ACNGT 6 cut(s) 635, 746, 1460, 1753, 2108, 2135
Bst6I CTCTTC 3 cut(s) 82, 1944, 2415
BstACI GRCGYC 2 cut(s) 22, 116
BstBAI YACGTR 2 cut(s) 1838, 2206
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 6 cut(s) 26, 136, 979, 1736, 1771, 2430
BstDEI CTNAG 9 cut(s) 98, 161, 465, 993, 1035, 1558, 1795, 1863, 2373
BstDSI CCRYGG 1 cut(s) 2285
BstEII GGTNACC 1 cut(s) 2400
BstENI CCTNNNNNAGG 1 cut(s) 645
BstF5I GGATG 5 cut(s) 1369, 1547, 2086, 2389, 2398
BstFNI CGCG 2 cut(s) 50, 1542
BstH2I RGCGCY 1 cut(s) 2284
BstHHI GCGC 4 cut(s) 97, 778, 814, 2283
BstKTI GATC 6 cut(s) 334, 367, 532, 1540, 1662, 1693
BstMAI GTCTC 2 cut(s) 1558, 2357
BstMBI GATC 6 cut(s) 331, 364, 529, 1537, 1659, 1690
BstMCI CGRYCG 1 cut(s) 1693
BstNI CCWGG 6 cut(s) 282, 380, 519, 864, 1446, 1584
BstNSI RCATGY 3 cut(s) 220, 1805, 1923
BstPI GGTNACC 1 cut(s) 2400
BstSCI CCNGG 9 cut(s) 280, 341, 378, 517, 862, 1093, 1284, 1444, 1582
BstSFI CTRYAG 2 cut(s) 1128, 1845
BstSLI GKGCMC 3 cut(s) 1020, 1078, 1246
BstUI CGCG 2 cut(s) 50, 1542
BstV1I GCAGC 8 cut(s) 79, 208, 1558, 1612, 1624, 1694, 1859, 1915
BstV2I GAAGAC 1 cut(s) 2262
BstXI CCANNNNNNTGG 1 cut(s) 1769
Bsu15I ATCGAT 1 cut(s) 1689
BsuRI GGCC 8 cut(s) 280, 1089, 1201, 1284, 1414, 1444, 1773, 2058
BsuTUI ATCGAT 1 cut(s) 1689
BtgI CCRYGG 1 cut(s) 2285
BtsCI GGATG 5 cut(s) 1369, 1547, 2086, 2389, 2398
BtsI GCAGTG 1 cut(s) 1842
BtsIMutI CAGTG 5 cut(s) 1842, 1850, 2050, 2140, 2370
BtuMI TCGCGA 1 cut(s) 1542
BveI ACCTGC 1 cut(s) 1121
Cac8I GCNNGC 6 cut(s) 26, 136, 979, 1736, 1771, 2430
CaiI CAGNNNCTG 1 cut(s) 2423
CciI TCATGA 1 cut(s) 748
CfoI GCGC 4 cut(s) 97, 778, 814, 2283
Cfr13I GGNCC 6 cut(s) 623, 1088, 1199, 1404, 2056, 2242
ClaI ATCGAT 1 cut(s) 1689
CseI GACGC 2 cut(s) 30, 124
Csp6I GTAC 4 cut(s) 664, 670, 1335, 1394
CviQI GTAC 4 cut(s) 664, 670, 1335, 1394
DdeI CTNAG 9 cut(s) 98, 161, 465, 993, 1035, 1558, 1795, 1863, 2373
DpnI GATC 6 cut(s) 333, 366, 531, 1539, 1661, 1692
DpnII GATC 6 cut(s) 331, 364, 529, 1537, 1659, 1690
DraI TTTAAA 2 cut(s) 499, 967
EaeI YGGCCR 2 cut(s) 1282, 1771
Eam1104I CTCTTC 3 cut(s) 82, 1944, 2415
EarI CTCTTC 3 cut(s) 82, 1944, 2415
EciI GGCGGA 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 836
Eco130I CCWWGG 3 cut(s) 248, 1930, 2285
Eco147I AGGCCT 3 cut(s) 280, 1414, 1444
Eco24I GRGCYC 2 cut(s) 838, 2304
Eco47I GGWCC 3 cut(s) 623, 1404, 2242
Eco53kI GAGCTC 1 cut(s) 836
Eco57I CTGAAG 2 cut(s) 1968, 2026
Eco72I CACGTG 1 cut(s) 1838
Eco91I GGTNACC 1 cut(s) 2400
EcoICRI GAGCTC 1 cut(s) 836
EcoNI CCTNNNNNAGG 1 cut(s) 645
EcoO109I RGGNCCY 2 cut(s) 623, 2242
EcoO65I GGTNACC 1 cut(s) 2400
EcoRII CCWGG 6 cut(s) 280, 378, 517, 862, 1444, 1582
EcoT14I CCWWGG 3 cut(s) 248, 1930, 2285
EcoT22I ATGCAT 1 cut(s) 1925
EcoT38I GRGCYC 2 cut(s) 838, 2304
ErhI CCWWGG 3 cut(s) 248, 1930, 2285
FalI AAGNNNNNCTT 8 cut(s) 947, 979, 1062, 1094, 1890, 1922, 2043, 2075
FaqI GGGAC 2 cut(s) 636, 1417
FauI CCCGC 3 cut(s) 127, 140, 2177
FauNDI CATATG 1 cut(s) 2017
FbaI TGATCA 2 cut(s) 331, 364
FokI GGATG 5 cut(s) 1376, 1534, 2093, 2396, 2405
FriOI GRGCYC 2 cut(s) 838, 2304
FspBI CTAG 2 cut(s) 249, 1248
GlaI GCGC 4 cut(s) 96, 777, 813, 2282
GsaI CCCAGC 1 cut(s) 1404
GsuI CTGGAG 4 cut(s) 253, 1404, 1614, 1998
HaeII RGCGCY 1 cut(s) 2284
HaeIII GGCC 8 cut(s) 280, 1089, 1201, 1284, 1414, 1444, 1773, 2058
HapII CCGG 5 cut(s) 144, 342, 645, 1095, 1285
HgaI GACGC 2 cut(s) 30, 124
HhaI GCGC 4 cut(s) 97, 778, 814, 2283
Hin1I GRCGYC 2 cut(s) 22, 116
Hin6I GCGC 4 cut(s) 95, 776, 812, 2281
HinP1I GCGC 4 cut(s) 95, 776, 812, 2281
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HindIII AAGCTT 1 cut(s) 729
HinfI GANTC 8 cut(s) 253, 400, 695, 1136, 1579, 1587, 2263, 2268
HpaII CCGG 5 cut(s) 144, 342, 645, 1095, 1285
HphI GGTGA 3 cut(s) 374, 1145, 2394
Hpy166II GTNNAC 3 cut(s) 694, 1018, 1244
Hpy8I GTNNAC 3 cut(s) 694, 1018, 1244
Hpy99I CGWCG 2 cut(s) 118, 261
HpyAV CCTTC 5 cut(s) 347, 651, 1088, 2069, 2383
HpyCH4III ACNGT 6 cut(s) 635, 746, 1460, 1753, 2108, 2135
HpyCH4IV ACGT 3 cut(s) 63, 1837, 2205
HpyF3I CTNAG 9 cut(s) 98, 161, 465, 993, 1035, 1558, 1795, 1863, 2373
HpySE526I ACGT 3 cut(s) 63, 1837, 2205
Hsp92I GRCGYC 2 cut(s) 22, 116
HspAI GCGC 4 cut(s) 95, 776, 812, 2281
Kpn2I TCCGGA 1 cut(s) 644
Ksp22I TGATCA 2 cut(s) 331, 364
Kzo9I GATC 6 cut(s) 331, 364, 529, 1537, 1659, 1690
LguI GCTCTTC 1 cut(s) 82
LmnI GCTCC 9 cut(s) 185, 584, 833, 1055, 1595, 1979, 2191, 2200, 2299
Lsp1109I GCAGC 8 cut(s) 79, 208, 1558, 1612, 1624, 1694, 1859, 1915
LweI GCATC 2 cut(s) 1264, 2410
MaeI CTAG 2 cut(s) 249, 1248
MaeII ACGT 3 cut(s) 63, 1837, 2205
MaeIII GTNAC 5 cut(s) 1496, 1822, 2002, 2045, 2400
MalI GATC 6 cut(s) 333, 366, 531, 1539, 1661, 1692
MboI GATC 6 cut(s) 331, 364, 529, 1537, 1659, 1690
MfeI CAATTG 2 cut(s) 784, 1346
MhlI GDGCHC 8 cut(s) 838, 1020, 1078, 1246, 1984, 2196, 2205, 2304
MlsI TGGCCA 1 cut(s) 1773
MluNI TGGCCA 1 cut(s) 1773
MlyI GAGTC 3 cut(s) 689, 1573, 2277
MmeI TCCRAC 1 cut(s) 2274
Mox20I TGGCCA 1 cut(s) 1773
Mph1103I ATGCAT 1 cut(s) 1925
MroI TCCGGA 1 cut(s) 644
MroXI GAANNNNTTC 2 cut(s) 388, 1884
MscI TGGCCA 1 cut(s) 1773
MseI TTAA 8 cut(s) 75, 173, 410, 498, 678, 966, 1488, 1818
MslI CAYNNNNRTG 1 cut(s) 539
Msp20I TGGCCA 1 cut(s) 1773
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 5 cut(s) 144, 342, 645, 1095, 1285
MspR9I CCNGG 9 cut(s) 282, 343, 380, 519, 864, 1095, 1286, 1446, 1584
MunI CAATTG 2 cut(s) 784, 1346
Mva1269I GAATGC 1 cut(s) 949
MvaI CCWGG 6 cut(s) 282, 380, 519, 864, 1446, 1584
MvnI CGCG 2 cut(s) 50, 1542
NciI CCSGG 3 cut(s) 343, 1095, 1286
NcoI CCATGG 1 cut(s) 2285
NdeI CATATG 1 cut(s) 2017
NdeII GATC 6 cut(s) 331, 364, 529, 1537, 1659, 1690
NlaIV GGNNCC 7 cut(s) 624, 791, 1075, 1146, 1405, 2301, 2333
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 3 cut(s) 2002, 2045, 2400
NruI TCGCGA 1 cut(s) 1542
NsiI ATGCAT 1 cut(s) 1925
NspI RCATGY 3 cut(s) 220, 1805, 1923
NspV TTCGAA 1 cut(s) 206
PagI TCATGA 1 cut(s) 748
PaqCI CACCTGC 1 cut(s) 1121
PasI CCCWGGG 1 cut(s) 379
PceI AGGCCT 3 cut(s) 280, 1414, 1444
PciI ACATGT 1 cut(s) 216
PciSI GCTCTTC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 2 cut(s) 40, 1456
PctI GAATGC 1 cut(s) 949
PdmI GAANNNNTTC 2 cut(s) 388, 1884
PfeI GAWTC 5 cut(s) 253, 400, 1136, 1587, 2263
PfoI TCCNGGA 2 cut(s) 1093, 1582
Ple19I CGATCG 1 cut(s) 1693
PleI GAGTC 3 cut(s) 689, 1573, 2276
PmaCI CACGTG 1 cut(s) 1838
PmlI CACGTG 1 cut(s) 1838
PpsI GAGTC 3 cut(s) 689, 1573, 2276
Ppu21I YACGTR 2 cut(s) 1838, 2206
PpuMI RGGWCCY 2 cut(s) 623, 2242
PscI ACATGT 1 cut(s) 216
PsiI TTATAA 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 838
Psp5II RGGWCCY 2 cut(s) 623, 2242
Psp6I CCWGG 6 cut(s) 280, 378, 517, 862, 1444, 1582
PspCI CACGTG 1 cut(s) 1838
PspEI GGTNACC 1 cut(s) 2400
PspFI CCCAGC 1 cut(s) 1400
PspGI CCWGG 6 cut(s) 280, 378, 517, 862, 1444, 1582
PspN4I GGNNCC 7 cut(s) 624, 791, 1075, 1146, 1405, 2301, 2333
PspPI GGNCC 6 cut(s) 623, 1088, 1199, 1404, 2056, 2242
PspPPI RGGWCCY 2 cut(s) 623, 2242
PsrI GAACNNNNNNTAC 2 cut(s) 1815, 1847
PstI CTGCAG 2 cut(s) 1132, 1849
PstNI CAGNNNCTG 1 cut(s) 2423
PvuI CGATCG 1 cut(s) 1693
RruI TCGCGA 1 cut(s) 1542
RsaI GTAC 4 cut(s) 665, 671, 1336, 1395
RsaNI GTAC 4 cut(s) 664, 670, 1335, 1394
RseI CAYNNNNRTG 1 cut(s) 539
SacI GAGCTC 1 cut(s) 838
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 8 cut(s) 75, 173, 410, 498, 678, 966, 1488, 1818
Sau3AI GATC 6 cut(s) 331, 364, 529, 1537, 1659, 1690
Sau96I GGNCC 6 cut(s) 623, 1088, 1199, 1404, 2056, 2242
ScaI AGTACT 2 cut(s) 671, 1336
SchI GAGTC 3 cut(s) 689, 1573, 2277
ScrFI CCNGG 9 cut(s) 282, 343, 380, 519, 864, 1095, 1286, 1446, 1584
SduI GDGCHC 8 cut(s) 838, 1020, 1078, 1246, 1984, 2196, 2205, 2304
SfaNI GCATC 2 cut(s) 1264, 2410
SfcI CTRYAG 2 cut(s) 1128, 1845
SfuI TTCGAA 1 cut(s) 206
SinI GGWCC 3 cut(s) 623, 1404, 2242
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 3 cut(s) 591, 1025, 1438
SmoI CTYRAG 3 cut(s) 591, 1025, 1438
SseBI AGGCCT 3 cut(s) 280, 1414, 1444
SspI AATATT 2 cut(s) 903, 1257
SspMI CTAG 2 cut(s) 249, 1248
SstI GAGCTC 1 cut(s) 838
StuI AGGCCT 3 cut(s) 280, 1414, 1444
StyD4I CCNGG 9 cut(s) 280, 341, 378, 517, 862, 1093, 1284, 1444, 1582
StyI CCWWGG 3 cut(s) 248, 1930, 2285
TaaI ACNGT 6 cut(s) 635, 746, 1460, 1753, 2108, 2135
TaiI ACGT 3 cut(s) 66, 1840, 2208
TaqI TCGA 6 cut(s) 206, 347, 1425, 1689, 1939, 2266
TaqII GACCGA 1 cut(s) 2388
TatI WGTACW 4 cut(s) 663, 669, 1334, 1393
TauI GCSGC 3 cut(s) 18, 121, 129
TfiI GAWTC 5 cut(s) 253, 400, 1136, 1587, 2263
Tru1I TTAA 8 cut(s) 75, 173, 410, 498, 678, 966, 1488, 1818
Tru9I TTAA 8 cut(s) 75, 173, 410, 498, 678, 966, 1488, 1818
TscAI CASTG 5 cut(s) 1849, 1857, 2050, 2140, 2377
TseFI GTSAC 3 cut(s) 2002, 2045, 2400
TseI GCWGC 8 cut(s) 92, 196, 1571, 1625, 1637, 1682, 1847, 1903
Tsp45I GTSAC 3 cut(s) 2002, 2045, 2400
TspDTI ATGAA 9 cut(s) 418, 433, 818, 835, 1635, 1682, 1779, 1893, 2097
TspGWI ACGGA 1 cut(s) 1762
TspRI CASTG 5 cut(s) 1849, 1857, 2050, 2140, 2377
VneI GTGCAC 2 cut(s) 1016, 1242
VpaK11BI GGWCC 3 cut(s) 623, 1404, 2242
XagI CCTNNNNNAGG 1 cut(s) 645
XapI RAATTY 6 cut(s) 385, 494, 652, 1010, 1062, 2084
XceI RCATGY 3 cut(s) 220, 1805, 1923
XcmI CCANNNNNNNNNTGG 1 cut(s) 1781
XmaJI CCTAGG 1 cut(s) 248
XmnI GAANNNNTTC 2 cut(s) 388, 1884
XspI CTAG 2 cut(s) 249, 1248
ZrmI AGTACT 2 cut(s) 671, 1336
Zsp2I ATGCAT 1 cut(s) 1925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.