Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003953

Physical Location & Seq

Genomic Coordinates Forward (+)

22707917 .. 22709632

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGACCGATTCGGTGATCTTCCGCACGAAGTGGCTCATCATATTCTCTCCTTCCTCCCCATAGCCGACTCAACTCGAGTCGGCATCTTATCCAAAAGATGCAGAGGAATTCACTTGTCAAATCCCACTTTGAATTTCACCGAGTTTCCTTCCGAGCTCACCCTCACCTTTAATGGGCGCTCTCAAATTTTGAATTCCTTAGATGGCTTCTTCAACCTTCATCGTGCCTTCAACAAAATACAGAGCTTCTCTCTGTCAATTGGGGAAACTGAACTGAGTGGAATCCAGAGTCTCTCTAGTGTGGAGATTTCTCAAATCCTCGGTTGGGTTCAAACTGCAGTGTTGAGGTGCAACGTGGAATCGCTTAACGTTTCGGTTAGGGTCAATGTGATGCTACAAAGACCTTTTGGGCCGAACGTGGTTAGTCCGAAAGGGATTCAGATTGAATTTCCTTCATGCGTTTTTGTTTGTCGGTCTTTGAGGTCTTTAACTTTGGACGTGAAGCATGTGATTTTGAAACCCCCTTGTTTTTCCCCATCTTCTTCTAGCTCCAATCCGGTCTGCTTGAAACTGGTAAACGTTACTGTAGAAGATGATGAGGGTTTTGCAAATGGGTATCGTTTTACTGCAAATCCCTCAAGGAATTGTCGCTTTGGGGAGTGCATGGCCTCAAGAATGTCACCATTGAGAGCTCGTCTCTGGAATTGTTCCAAACTCGATGAGTTCTTCGGCAGTATCCGAAGCGTTAAAGTTCTTGTTATAGAACAACTCACTGCTCAGGAATCATCATTCGATAGTGGTCATTGGCAACTGCAAGAACTCGACTTCATCAATCGGATTAAGGAGGTAACAATAGAGATTACTGATGGGTCTAATGGAATTGAGTTTGCAAAGTATGTGCTGGAGAATTCTCCTAGTTTGAAAATAATGTTCATCATATGTGCACCCACCACTCAAAAATCAAGCTTGATGGAAGGGTTTAGGACAAGTAGGGTTATAAACCCTATCATGATTGTCTTTCTGGCTCAAGACAACAAGAATAAAGTAATAGTTAGCGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

354

Amino Acids

39.55

Weight (kDa)

8.33

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g19053 FvH4_6g19370 FvH4_6g22710 FvH4_6g22710 FvH4_6g33902 FvH4_7g12363
malus_domestica	MD14G1025800.v1.1
pyrus_communis	pycom14g02500
rosa_chinensis	RchiOBHm_Chr3g0481121
rosa_laevigata	RLG00000023419 RLG00000023953
rosa_multiflora	Rmu_sc0001551.1_g000014 Rmu_sc0001551.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400620 Rroxscaffold_6G00407510
rosa_rugosa	Rorug03G0138200 Rorug03G0138500 Rorug03G0138600
rosa_samantha	Rh3AG188300 Rh3AG188400 Rh3AG240700 Rh3AG316900 Rh3BG217200 Rh3BG217400 Rh3BG217600 Rh3BG276400 Rh3CG213300 Rh3CG213500 Rh3DG267800 Rh7DG163400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	998
AciI	CCGC	1 cut(s)	23
AclI	AACGTT	2 cut(s)	369, 579
AcsI	RAATTY	6 cut(s)	108, 133, 186, 193, 446, 907
AdeI	CACNNNGTG	1 cut(s)	31
AfeI	AGCGCT	1 cut(s)	1057
AfiI	CCNNNNNNNGG	2 cut(s)	174, 325
AgsI	TTSAA	9 cut(s)	133, 193, 214, 232, 332, 446, 517, 568, 922
AjiI	CACGTC	1 cut(s)	499
AluBI	AGCT	5 cut(s)	157, 246, 549, 692, 966
AluI	AGCT	5 cut(s)	157, 246, 549, 692, 966
Alw21I	GWGCWC	3 cut(s)	159, 694, 946
Alw26I	GTCTC	2 cut(s)	296, 701
Alw44I	GTGCAC	1 cut(s)	942
Ama87I	CYCGRG	1 cut(s)	75
Aor51HI	AGCGCT	1 cut(s)	1057
AoxI	GGCC	2 cut(s)	410, 666
ApaLI	GTGCAC	1 cut(s)	942
ApoI	RAATTY	6 cut(s)	108, 133, 186, 193, 446, 907
AspLEI	GCGC	2 cut(s)	180, 1058
AspS9I	GGNCC	2 cut(s)	4, 410
AsuHPI	GGTGA	5 cut(s)	26, 130, 151, 157, 672
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	946
BanII	GRGCYC	2 cut(s)	159, 694
Bbv12I	GWGCWC	3 cut(s)	159, 694, 946
BccI	CCATC	4 cut(s)	197, 544, 860, 964
BciVI	GTATCC	1 cut(s)	746
BcoDI	GTCTC	2 cut(s)	296, 701
BfaI	CTAG	3 cut(s)	297, 546, 915
BfmI	CTRYAG	2 cut(s)	336, 585
BfoI	RGCGCY	2 cut(s)	181, 1059
BfuI	GTATCC	1 cut(s)	746
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	75
BmgBI	CACGTC	1 cut(s)	499
BmgT120I	GGNCC	2 cut(s)	4, 410
BmsI	GCATC	3 cut(s)	89, 93, 381
BplI	GAGNNNNNCTC	4 cut(s)	235, 267, 681, 713
BpmI	CTGGAG	1 cut(s)	923
Bpu10I	CCTNAGC	1 cut(s)	777
BpuEI	CTTGAG	3 cut(s)	622, 655, 1011
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 325
Bse1I	ACTGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	319
BseLI	CCNNNNNNNGG	2 cut(s)	174, 325
BseMII	CTCAG	2 cut(s)	266, 791
BseNI	ACTGG	1 cut(s)	576
BseSI	GKGCMC	1 cut(s)	946
BshFI	GGCC	2 cut(s)	412, 668
BsiHKAI	GWGCWC	3 cut(s)	159, 694, 946
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	174, 325
BsmAI	GTCTC	2 cut(s)	296, 701
BsmBI	CGTCTC	1 cut(s)	701
BsnI	GGCC	2 cut(s)	412, 668
BsoBI	CYCGRG	1 cut(s)	75
Bsp1286I	GDGCHC	3 cut(s)	159, 694, 946
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	412, 668
BspCNI	CTCAG	2 cut(s)	267, 790
BspHI	TCATGA	1 cut(s)	1008
BspMAI	CTGCAG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	586
BstDEI	CTNAG	3 cut(s)	199, 275, 777
BstH2I	RGCGCY	2 cut(s)	181, 1059
BstHHI	GCGC	2 cut(s)	180, 1058
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	2 cut(s)	296, 701
BstMBI	GATC	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	509
BstSFI	CTRYAG	2 cut(s)	336, 585
BstSLI	GKGCMC	1 cut(s)	946
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	2 cut(s)	412, 668
BtrI	CACGTC	1 cut(s)	499
BtsI	GCAGTG	2 cut(s)	345, 771
BtsIMutI	CAGTG	2 cut(s)	345, 771
CciI	TCATGA	1 cut(s)	1008
CfoI	GCGC	2 cut(s)	180, 1058
Cfr13I	GGNCC	2 cut(s)	4, 410
CviAII	CATG	4 cut(s)	456, 506, 664, 1009
DdeI	CTNAG	3 cut(s)	199, 275, 777
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DraIII	CACNNNGTG	1 cut(s)	31
Ecl136II	GAGCTC	2 cut(s)	157, 692
Eco24I	GRGCYC	2 cut(s)	159, 694
Eco47I	GGWCC	1 cut(s)	4
Eco47III	AGCGCT	1 cut(s)	1057
Eco53kI	GAGCTC	2 cut(s)	157, 692
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	2 cut(s)	157, 692
EcoRI	GAATTC	3 cut(s)	108, 193, 907
EcoT38I	GRGCYC	2 cut(s)	159, 694
Esp3I	CGTCTC	1 cut(s)	701
FaeI	CATG	4 cut(s)	459, 509, 667, 1012
FatI	CATG	4 cut(s)	455, 505, 663, 1008
FauNDI	CATATG	1 cut(s)	938
FriOI	GRGCYC	2 cut(s)	159, 694
FspBI	CTAG	3 cut(s)	297, 546, 915
GlaI	GCGC	2 cut(s)	179, 1057
GsuI	CTGGAG	1 cut(s)	923
HaeII	RGCGCY	2 cut(s)	181, 1059
HaeIII	GGCC	2 cut(s)	412, 668
HapII	CCGG	1 cut(s)	557
HhaI	GCGC	2 cut(s)	180, 1058
Hin1II	CATG	4 cut(s)	459, 509, 667, 1012
Hin6I	GCGC	2 cut(s)	178, 1056
HinP1I	GCGC	2 cut(s)	178, 1056
HindIII	AAGCTT	1 cut(s)	964
HinfI	GANTC	8 cut(s)	9, 68, 78, 282, 289, 359, 436, 782
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	5 cut(s)	26, 130, 151, 157, 672
Hpy166II	GTNNAC	2 cut(s)	577, 944
Hpy188I	TCNGA	5 cut(s)	154, 429, 441, 740, 837
Hpy188III	TCNNGA	6 cut(s)	286, 672, 700, 779, 1009, 1028
Hpy8I	GTNNAC	2 cut(s)	577, 944
HpyAV	CCTTC	6 cut(s)	61, 159, 227, 238, 462, 968
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	5 cut(s)	354, 369, 417, 498, 579
HpyCH4V	TGCA	9 cut(s)	102, 338, 351, 608, 629, 663, 814, 890, 944
HpyF3I	CTNAG	3 cut(s)	199, 275, 777
HpySE526I	ACGT	5 cut(s)	354, 369, 417, 498, 579
Hsp92II	CATG	4 cut(s)	459, 509, 667, 1012
HspAI	GCGC	2 cut(s)	178, 1056
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	554
LpnPI	CCDG	7 cut(s)	299, 557, 570, 685, 764, 887, 1007
LweI	GCATC	3 cut(s)	89, 93, 381
MaeI	CTAG	3 cut(s)	297, 546, 915
MaeII	ACGT	5 cut(s)	354, 369, 417, 498, 579
MaeIII	GTNAC	3 cut(s)	580, 678, 847
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	6 cut(s)	11, 202, 531, 534, 602, 718
MfeI	CAATTG	1 cut(s)	258
MhlI	GDGCHC	3 cut(s)	159, 694, 946
MlyI	GAGTC	3 cut(s)	62, 87, 298
MseI	TTAA	5 cut(s)	171, 366, 488, 747, 840
MspI	CCGG	1 cut(s)	557
MunI	CAATTG	1 cut(s)	258
NdeI	CATATG	1 cut(s)	938
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	459, 509, 667, 1012
NmuCI	GTSAC	1 cut(s)	678
NspI	RCATGY	1 cut(s)	509
PaeR7I	CTCGAG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	1008
PfeI	GAWTC	5 cut(s)	9, 282, 359, 436, 782
PleI	GAGTC	3 cut(s)	62, 86, 297
PpsI	GAGTC	3 cut(s)	62, 86, 297
PsiI	TTATAA	1 cut(s)	998
Psp124BI	GAGCTC	2 cut(s)	159, 694
Psp1406I	AACGTT	2 cut(s)	369, 579
PspPI	GGNCC	2 cut(s)	4, 410
PspXI	VCTCGAGB	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	340
SacI	GAGCTC	2 cut(s)	159, 694
SaqAI	TTAA	5 cut(s)	171, 366, 488, 747, 840
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	2 cut(s)	4, 410
SchI	GAGTC	3 cut(s)	62, 87, 298
SduI	GDGCHC	3 cut(s)	159, 694, 946
SfaNI	GCATC	3 cut(s)	89, 93, 381
SfcI	CTRYAG	2 cut(s)	336, 585
Sfr274I	CTCGAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	4 cut(s)	75, 637, 670, 1026
SmoI	CTYRAG	4 cut(s)	75, 637, 670, 1026
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	3 cut(s)	297, 546, 915
SstI	GAGCTC	2 cut(s)	159, 694
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	5 cut(s)	357, 372, 420, 501, 582
TaqI	TCGA	4 cut(s)	76, 717, 792, 822
TaqII	GACCGA	2 cut(s)	21, 462
TfiI	GAWTC	5 cut(s)	9, 282, 359, 436, 782
Tru1I	TTAA	5 cut(s)	171, 366, 488, 747, 840
Tru9I	TTAA	5 cut(s)	171, 366, 488, 747, 840
TscAI	CASTG	2 cut(s)	345, 778
TseFI	GTSAC	1 cut(s)	678
Tsp45I	GTSAC	1 cut(s)	678
TspDTI	ATGAA	4 cut(s)	209, 444, 817, 922
TspRI	CASTG	2 cut(s)	345, 778
VneI	GTGCAC	1 cut(s)	942
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	6 cut(s)	108, 133, 186, 193, 446, 907
XceI	RCATGY	1 cut(s)	509
XhoI	CTCGAG	1 cut(s)	75
XspI	CTAG	3 cut(s)	297, 546, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.