Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003953

Physical Location & Seq

Genomic Coordinates Forward (+)

19542455 .. 19564555

Gene Structure 22101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG213300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTCCTCAATGTGGCTCCTCTGATGTCCTCATCATCATCTCCGCTGAGAGCAGACAACAAGGCATTAATGCCACTAAGTGATTCTATAAGACCAGAACAATTGATAATCAAGATCAGGGAGGAAGGTTTCACACCTGCCCCATTGGGCAATGTGTGGTACTTGCTTATGTCTATTTGGTGCAGTATTGATGACAACCTTGTGCTAGCCGTGACCTCTCTTTTCAGGGCTGTGCCTAATTTGATTACTTTGAACGTATCATCATCTCCTGAGTTTCCTTTTCATGGTGGTGGTGATAATGTATCTGGATTTGATAGGGGATATTGGGAACTCCAGGGGCTTGATTTTGTTTCTAAGCTAGAGGAGGTAACCATAGAGCTTACCACTGGGTCTAATGGATTTGAATTAGCGAGGTACATGCTTGAGCATGCTGGTAATTTGAAGAAAATGTTTGTTATTACTACACCCGATCAATCAAGTTTAGTACCGGAAATACGGAGAACCAACCGTACTTCCAATGCTAGAGTTGTCTTTCTGGTAAAACGGAAGCTGCCTCCTCGTCGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

189

Amino Acids

21.14

Weight (kDa)

7.88

Isoelectric Point (pI)

59.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g19053 FvH4_6g19370 FvH4_6g22710 FvH4_6g22710 FvH4_6g33902 FvH4_7g12363
malus_domestica	MD14G1025800.v1.1
pyrus_communis	pycom14g02500
rosa_chinensis	RchiOBHm_Chr3g0481121
rosa_laevigata	RLG00000023419 RLG00000023953
rosa_multiflora	Rmu_sc0001551.1_g000014 Rmu_sc0001551.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400620 Rroxscaffold_6G00407510
rosa_rugosa	Rorug03G0138200 Rorug03G0138500 Rorug03G0138600
rosa_samantha	Rh3AG188300 Rh3AG188400 Rh3AG240700 Rh3AG316900 Rh3BG217200 Rh3BG217400 Rh3BG217600 Rh3BG276400 Rh3CG213300 Rh3CG213500 Rh3DG267800 Rh7DG163400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	145
AciI	CCGC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	80
AfaI	GTAC	4 cut(s)	161, 416, 486, 511
AfiI	CCNNNNNNNGG	2 cut(s)	13, 284
AgsI	TTSAA	3 cut(s)	253, 404, 442
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	3 cut(s)	358, 379, 550
AluI	AGCT	3 cut(s)	358, 379, 550
ApeKI	GCWGC	1 cut(s)	550
AseI	ATTAAT	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	305
AsuNHI	GCTAGC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	537
BceAI	ACGGC	1 cut(s)	194
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	1 cut(s)	335
BfaI	CTAG	3 cut(s)	206, 359, 522
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	1 cut(s)	551
BlsI	GCNGC	1 cut(s)	552
Bme1390I	CCNGG	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	335
BmrI	ACTGGG	1 cut(s)	396
BmtI	GCTAGC	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	334
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 284
Bse1I	ACTGG	1 cut(s)	391
Bse3DI	GCAATG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	334
BseLI	CCNNNNNNNGG	2 cut(s)	13, 284
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	38, 261
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	3 cut(s)	9, 377, 546
BseXI	GCAGC	1 cut(s)	537
BsgI	GTGCAG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	488
BslI	CCNNNNNNNGG	2 cut(s)	13, 284
Bsp143I	GATC	2 cut(s)	114, 469
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	39, 262
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	145
BspOI	GCTAGC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	334
BssMI	GATC	2 cut(s)	114, 469
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	207, 429
BstDEI	CTNAG	4 cut(s)	47, 77, 270, 354
BstEII	GGTNACC	1 cut(s)	367
BstKTI	GATC	2 cut(s)	117, 472
BstMBI	GATC	2 cut(s)	114, 469
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	2 cut(s)	421, 431
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	207, 429
Csp6I	GTAC	4 cut(s)	160, 415, 485, 510
CviAII	CATG	3 cut(s)	284, 418, 428
CviJI	RGCY	7 cut(s)	17, 209, 230, 340, 358, 379, 550
CviKI_1	RGCY	7 cut(s)	17, 209, 230, 340, 358, 379, 550
CviQI	GTAC	4 cut(s)	160, 415, 485, 510
DdeI	CTNAG	4 cut(s)	47, 77, 270, 354
DpnI	GATC	2 cut(s)	116, 471
DpnII	GATC	2 cut(s)	114, 469
DraIII	CACNNNGTG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	333
FaeI	CATG	3 cut(s)	287, 421, 431
FaiI	YATR	6 cut(s)	89, 170, 285, 374, 419, 429
FatI	CATG	3 cut(s)	283, 417, 427
Fnu4HI	GCNGC	1 cut(s)	551
Fsp4HI	GCNGC	1 cut(s)	551
FspBI	CTAG	3 cut(s)	206, 359, 522
GluI	GCNGC	1 cut(s)	551
GsuI	CTGGAG	1 cut(s)	317
HapII	CCGG	1 cut(s)	488
Hin1II	CATG	3 cut(s)	287, 421, 431
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	3 cut(s)	112, 269, 306
Hpy99I	CGWCG	1 cut(s)	564
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	183
HpyF3I	CTNAG	4 cut(s)	47, 77, 270, 354
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	287, 421, 431
Kzo9I	GATC	2 cut(s)	114, 469
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	537
MaeI	CTAG	3 cut(s)	206, 359, 522
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	211, 367
MalI	GATC	2 cut(s)	116, 471
MboI	GATC	2 cut(s)	114, 469
MboII	GAAGA	1 cut(s)	454
MfeI	CAATTG	1 cut(s)	101
MluCI	AATT	4 cut(s)	101, 238, 404, 436
MseI	TTAA	2 cut(s)	68, 568
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	335
MunI	CAATTG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	335
NdeII	GATC	2 cut(s)	114, 469
NheI	GCTAGC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	287, 421, 431
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	2 cut(s)	421, 431
PaeI	GCATGC	1 cut(s)	431
PaqCI	CACCTGC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	552
PshBI	ATTAAT	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	333
PspEI	GGTNACC	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	18
PsrI	GAACNNNNNNTAC	2 cut(s)	493, 525
RsaI	GTAC	4 cut(s)	161, 416, 486, 511
RsaNI	GTAC	4 cut(s)	160, 415, 485, 510
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	68, 568
SatI	GCNGC	1 cut(s)	551
Sau3AI	GATC	2 cut(s)	114, 469
ScrFI	CCNGG	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	4 cut(s)	101, 238, 404, 436
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	3 cut(s)	206, 359, 522
StyD4I	CCNGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	509
TaiI	ACGT	1 cut(s)	258
TasI	AATT	4 cut(s)	101, 238, 404, 436
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	68, 568
Tru9I	TTAA	2 cut(s)	68, 568
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	550
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	2 cut(s)	511, 559
TspRI	CASTG	1 cut(s)	391
VspI	ATTAAT	1 cut(s)	68
XceI	RCATGY	2 cut(s)	421, 431
XspI	CTAG	3 cut(s)	206, 359, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.