Rh3BG276400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003953
Physical Location & Seq
Reverse (-)
27063786 .. 27065740
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG276400.1

Sequence Viewer

Length: 1323 bp
ATGGACCGATTCAGTGATCTTCCGCACGAAGTCGCTCATCATATTCTCTCATTCCTTCCCATAGCCGACTCTACTCGAGTCGGCATCTTGTCCAAAAGATGCAGAGGAATTCACTTGTCAAATCCCACTTTGAATTTCACCGAGTTTCCTTCCGAGCTCACGCTCACATCCAATGGGCGCTCTCAAATTTTGAATTCCTTAGATGGCTTCTTCAACATTCATCGCGCCTTGAACAAAATACAGAGTTTCTGTGTCAATTGGGTTTCTCGATTCGATCCAAGGGAAACTGAACTTATCGAAATCGACAGTCTCTCTACTGTGGAGATTTCTCAAATCCTCTTTTGGGTTCAAACCGCAGTGCTGAGGTGCAACGTGGAATCGCTCAACGTTTCGGTTAGAGTCAATTTGCTGCTTCAAGGTCATATTGGTGGGCCGAACGTGGTTATTCCTGGTGGGTTTCAGATTGAATTTCCTTCATGCGTTTTTGTTTGTGGGTCTTTGAGGTCTTTAACTTTGGACGTGGCGCATGTGATTTTGAAATCCCCTTGTTTTTCCCCATCTTCTTCTAGCTCTAATCTGGTCTGCTTGAAACTGAGAAATGTTACTGTACAAGACGATGATGGGTTTTGCAAATGGGTATCGTTCTACTGCAAATCCCTCAAGGAATTGTCGCTTTGGGGAGTGGAAGGCCTCAAGAATGTCACCATCAAGAGCTCGTCTCTGGAATCGTTCGTGATTCTTCCTCCGCGTGGTATCTTCCATCTTACCATCTCCGGTGACAAACTTGAAAAAATATATATAGATTGGGAACTTTCAGCAAACACCAATTCTTTGAATGTTTTTGCTCCAAATCTCAAGTATTTGACATGGTTTGGAAACATAATGAACCATCATTCTCTTGGAGAGTTGAATTGCTTGGAACAAGTCGAGATTTTTGTCTCTACTATGTTGGCTAAAGGAACTGGGCGAATTCTTGACTTACACAGCAAACTCGATAAGTTCTTCTGCAGTATCCGAAGCGTTAAGGTTCTTGTTATAAAACAACACACTGCTCAGAAGCTGATGGAGGAAGGCTTCATGCATTTCCTGGAATCATTCTATAATGTTCGGAATTTGGGTGTTCGTATTAGCTCAGATTTGGATGACAAGATGATTCCATCAATAGTCTCTCTTCTCAGAGCAGTGCCTAATTTCACTACTTTGGATATAAGATCGCCTCGCGATAAAGTCTTTTTTTCCTGTAGACCTGTTAATGTAGGAGGGATCATACAAGTTTATTCAAGTAGTCATGACCTGACATATTTAACATCTGCAAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

440

Amino Acids

49.4

Weight (kDa)

7.59

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 155 - 372 1e-05 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1037
AccI GTMKAC 1 cut(s) 1243
AccII CGCG 3 cut(s) 225, 748, 1221
AciI CCGC 3 cut(s) 23, 354, 746
AclI AACGTT 1 cut(s) 387
AclWI GGATC 2 cut(s) 269, 1271
AcsI RAATTY 8 cut(s) 108, 133, 186, 193, 467, 969, 1111, 1315
AfaI GTAC 1 cut(s) 609
AfiI CCNNNNNNNGG 2 cut(s) 343, 749
AjiI CACGTC 1 cut(s) 520
AjnI CCWGG 2 cut(s) 448, 1086
AluBI AGCT 5 cut(s) 157, 570, 714, 1060, 1131
AluI AGCT 5 cut(s) 157, 570, 714, 1060, 1131
Alw21I GWGCWC 2 cut(s) 159, 716
Alw26I GTCTC 4 cut(s) 314, 723, 943, 1171
AlwI GGATC 2 cut(s) 269, 1271
AlwNI CAGNNNCTG 1 cut(s) 1060
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 2 cut(s) 431, 688
ApeKI GCWGC 1 cut(s) 409
ApoI RAATTY 8 cut(s) 108, 133, 186, 193, 467, 969, 1111, 1315
AspLEI GCGC 3 cut(s) 180, 227, 526
AspS9I GGNCC 2 cut(s) 4, 431
AsuHPI GGTGA 3 cut(s) 130, 694, 788
AvaI CYCGRG 1 cut(s) 75
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 159, 716
Bbv12I GWGCWC 2 cut(s) 159, 716
BbvCI CCTCAGC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 396
BccI CCATC 9 cut(s) 197, 565, 614, 713, 768, 776, 897, 1057, 1165
BciT130I CCWGG 2 cut(s) 450, 1088
BciVI GTATCC 1 cut(s) 1022
BcoDI GTCTC 4 cut(s) 314, 723, 943, 1171
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 2 cut(s) 1006, 1240
BfoI RGCGCY 1 cut(s) 181
BfuI GTATCC 1 cut(s) 1022
BisI GCNGC 1 cut(s) 410
BlsI GCNGC 1 cut(s) 411
Bme1390I CCNGG 2 cut(s) 450, 1088
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 75
BmgBI CACGTC 1 cut(s) 520
BmgT120I GGNCC 2 cut(s) 4, 431
BmrFI CCNGG 2 cut(s) 450, 1088
BmrI ACTGGG 1 cut(s) 972
BmsI GCATC 2 cut(s) 89, 93
BmuI ACTGGG 1 cut(s) 972
BplI GAGNNNNNCTC 2 cut(s) 703, 735
Bpu10I CCTNAGC 1 cut(s) 362
BpuEI CTTGAG 3 cut(s) 644, 677, 839
BsaJI CCNNGG 1 cut(s) 278
BsaWI WCCGGW 1 cut(s) 773
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 749
Bse1I ACTGG 1 cut(s) 967
BseBI CCWGG 2 cut(s) 450, 1088
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 167, 1147
BseLI CCNNNNNNNGG 2 cut(s) 343, 749
BseMII CTCAG 5 cut(s) 353, 584, 1067, 1146, 1189
BseNI ACTGG 1 cut(s) 967
BseXI GCAGC 1 cut(s) 396
Bsh1236I CGCG 3 cut(s) 225, 748, 1221
BshFI GGCC 2 cut(s) 433, 690
BsiHKAI GWGCWC 2 cut(s) 159, 716
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 774
BslI CCNNNNNNNGG 2 cut(s) 343, 749
BsmAI GTCTC 4 cut(s) 314, 723, 943, 1171
BsmBI CGTCTC 1 cut(s) 723
BsnI GGCC 2 cut(s) 433, 690
BsoBI CYCGRG 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 159, 716
Bsp1407I TGTACA 1 cut(s) 607
Bsp143I GATC 4 cut(s) 16, 274, 1211, 1263
Bsp68I TCGCGA 1 cut(s) 1221
BspACI CCGC 3 cut(s) 23, 354, 746
BspANI GGCC 2 cut(s) 433, 690
BspCNI CTCAG 5 cut(s) 354, 585, 1066, 1145, 1188
BspFNI CGCG 3 cut(s) 225, 748, 1221
BspHI TCATGA 1 cut(s) 1288
BspMAI CTGCAG 1 cut(s) 1010
BspPI GGATC 2 cut(s) 269, 1271
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 1 cut(s) 967
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 4 cut(s) 16, 274, 1211, 1263
BssT1I CCWWGG 1 cut(s) 278
Bst2UI CCWGG 2 cut(s) 450, 1088
Bst4CI ACNGT 3 cut(s) 308, 319, 607
Bst6I CTCTTC 1 cut(s) 1176
BstAUI TGTACA 1 cut(s) 607
BstDEI CTNAG 6 cut(s) 199, 362, 593, 1053, 1132, 1175
BstF5I GGATG 2 cut(s) 167, 1147
BstFNI CGCG 3 cut(s) 225, 748, 1221
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 3 cut(s) 180, 227, 526
BstKTI GATC 4 cut(s) 19, 277, 1214, 1266
BstMAI GTCTC 4 cut(s) 314, 723, 943, 1171
BstMBI GATC 4 cut(s) 16, 274, 1211, 1263
BstNI CCWGG 2 cut(s) 450, 1088
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 448, 1086
BstSFI CTRYAG 2 cut(s) 1006, 1240
BstUI CGCG 3 cut(s) 225, 748, 1221
BstV1I GCAGC 1 cut(s) 396
BsuI GTATCC 1 cut(s) 1022
BsuRI GGCC 2 cut(s) 433, 690
BtgZI GCGATG 1 cut(s) 206
BtrI CACGTC 1 cut(s) 520
BtsCI GGATG 2 cut(s) 167, 1147
BtsI GCAGTG 3 cut(s) 363, 1047, 1188
BtsIMutI CAGTG 4 cut(s) 19, 363, 1047, 1188
BtuMI TCGCGA 1 cut(s) 1221
CaiI CAGNNNCTG 1 cut(s) 1060
CciI TCATGA 1 cut(s) 1288
CfoI GCGC 3 cut(s) 180, 227, 526
Cfr13I GGNCC 2 cut(s) 4, 431
Csp6I GTAC 1 cut(s) 608
CviAII CATG 5 cut(s) 477, 527, 867, 1078, 1289
CviQI GTAC 1 cut(s) 608
DdeI CTNAG 6 cut(s) 199, 362, 593, 1053, 1132, 1175
DpnI GATC 4 cut(s) 18, 276, 1213, 1265
DpnII GATC 4 cut(s) 16, 274, 1211, 1263
Eam1104I CTCTTC 1 cut(s) 1176
EarI CTCTTC 1 cut(s) 1176
Ecl136II GAGCTC 2 cut(s) 157, 714
Eco130I CCWWGG 1 cut(s) 278
Eco147I AGGCCT 1 cut(s) 690
Eco24I GRGCYC 2 cut(s) 159, 716
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 2 cut(s) 157, 714
Eco88I CYCGRG 1 cut(s) 75
EcoICRI GAGCTC 2 cut(s) 157, 714
EcoRI GAATTC 3 cut(s) 108, 193, 969
EcoRII CCWGG 2 cut(s) 448, 1086
EcoT14I CCWWGG 1 cut(s) 278
EcoT22I ATGCAT 1 cut(s) 1083
EcoT38I GRGCYC 2 cut(s) 159, 716
ErhI CCWWGG 1 cut(s) 278
Esp3I CGTCTC 1 cut(s) 723
FaeI CATG 5 cut(s) 480, 530, 870, 1081, 1292
FatI CATG 5 cut(s) 476, 526, 866, 1077, 1288
FblI GTMKAC 1 cut(s) 1243
Fnu4HI GCNGC 1 cut(s) 410
FokI GGATG 2 cut(s) 154, 1154
FriOI GRGCYC 2 cut(s) 159, 716
Fsp4HI GCNGC 1 cut(s) 410
FspBI CTAG 1 cut(s) 567
GlaI GCGC 3 cut(s) 179, 226, 525
GluI GCNGC 1 cut(s) 410
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 2 cut(s) 433, 690
HapII CCGG 1 cut(s) 774
HhaI GCGC 3 cut(s) 180, 227, 526
Hin1II CATG 5 cut(s) 480, 530, 870, 1081, 1292
Hin6I GCGC 3 cut(s) 178, 225, 524
HinP1I GCGC 3 cut(s) 178, 225, 524
HpaII CCGG 1 cut(s) 774
HphI GGTGA 3 cut(s) 130, 694, 788
Hpy166II GTNNAC 1 cut(s) 1244
Hpy188I TCNGA 7 cut(s) 154, 462, 1016, 1056, 1110, 1135, 1178
Hpy188III TCNNGA 9 cut(s) 267, 694, 709, 722, 733, 928, 974, 1220, 1289
Hpy8I GTNNAC 1 cut(s) 1244
HpyAV CCTTC 5 cut(s) 65, 159, 483, 680, 1064
HpyCH4III ACNGT 3 cut(s) 308, 319, 607
HpyCH4IV ACGT 4 cut(s) 372, 387, 438, 519
HpyCH4V TGCA 7 cut(s) 102, 369, 630, 651, 1008, 1081, 1313
HpyF3I CTNAG 6 cut(s) 199, 362, 593, 1053, 1132, 1175
HpySE526I ACGT 4 cut(s) 372, 387, 438, 519
Hsp92II CATG 5 cut(s) 480, 530, 870, 1081, 1292
HspAI GCGC 3 cut(s) 178, 225, 524
Kzo9I GATC 4 cut(s) 16, 274, 1211, 1263
LmnI GCTCC 1 cut(s) 850
Lsp1109I GCAGC 1 cut(s) 396
LweI GCATC 2 cut(s) 89, 93
MaeI CTAG 1 cut(s) 567
MaeII ACGT 4 cut(s) 372, 387, 438, 519
MaeIII GTNAC 3 cut(s) 601, 700, 776
MalI GATC 4 cut(s) 18, 276, 1213, 1265
MboI GATC 4 cut(s) 16, 274, 1211, 1263
MboII GAAGA 8 cut(s) 11, 202, 552, 555, 731, 748, 994, 1163
MfeI CAATTG 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 159, 716
MlyI GAGTC 3 cut(s) 62, 87, 408
Mph1103I ATGCAT 1 cut(s) 1083
MseI TTAA 4 cut(s) 509, 1023, 1251, 1304
MslI CAYNNNNRTG 1 cut(s) 426
MspI CCGG 1 cut(s) 774
MspR9I CCNGG 2 cut(s) 450, 1088
MunI CAATTG 1 cut(s) 256
MvaI CCWGG 2 cut(s) 450, 1088
MvnI CGCG 3 cut(s) 225, 748, 1221
NdeII GATC 4 cut(s) 16, 274, 1211, 1263
NlaIII CATG 5 cut(s) 480, 530, 870, 1081, 1292
NmuCI GTSAC 2 cut(s) 700, 776
NruI TCGCGA 1 cut(s) 1221
NsiI ATGCAT 1 cut(s) 1083
NspI RCATGY 1 cut(s) 530
PaeR7I CTCGAG 1 cut(s) 75
PagI TCATGA 1 cut(s) 1288
PceI AGGCCT 1 cut(s) 690
PfeI GAWTC 7 cut(s) 9, 270, 377, 725, 736, 1091, 1153
PfoI TCCNGGA 1 cut(s) 1086
PkrI GCNGC 1 cut(s) 411
PleI GAGTC 3 cut(s) 62, 86, 407
PpsI GAGTC 3 cut(s) 62, 86, 407
PsiI TTATAA 1 cut(s) 1037
Psp124BI GAGCTC 2 cut(s) 159, 716
Psp1406I AACGTT 1 cut(s) 387
Psp6I CCWGG 2 cut(s) 448, 1086
PspGI CCWGG 2 cut(s) 448, 1086
PspPI GGNCC 2 cut(s) 4, 431
PspXI VCTCGAGB 1 cut(s) 75
PstI CTGCAG 1 cut(s) 1010
PstNI CAGNNNCTG 1 cut(s) 1060
RruI TCGCGA 1 cut(s) 1221
RsaI GTAC 1 cut(s) 609
RsaNI GTAC 1 cut(s) 608
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 2 cut(s) 159, 716
SaqAI TTAA 4 cut(s) 509, 1023, 1251, 1304
SatI GCNGC 1 cut(s) 410
Sau3AI GATC 4 cut(s) 16, 274, 1211, 1263
Sau96I GGNCC 2 cut(s) 4, 431
SchI GAGTC 3 cut(s) 62, 87, 408
ScrFI CCNGG 2 cut(s) 450, 1088
SduI GDGCHC 2 cut(s) 159, 716
SfaNI GCATC 2 cut(s) 89, 93
SfcI CTRYAG 2 cut(s) 1006, 1240
Sfr274I CTCGAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 4 cut(s) 75, 659, 692, 854
SmoI CTYRAG 4 cut(s) 75, 659, 692, 854
SseBI AGGCCT 1 cut(s) 690
SsiI CCGC 3 cut(s) 23, 354, 746
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 2 cut(s) 159, 716
StuI AGGCCT 1 cut(s) 690
StyD4I CCNGG 2 cut(s) 448, 1086
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 3 cut(s) 308, 319, 607
TaiI ACGT 4 cut(s) 375, 390, 441, 522
TaqI TCGA 7 cut(s) 76, 268, 273, 297, 303, 927, 993
TaqII GACCGA 1 cut(s) 21
TatI WGTACW 1 cut(s) 607
TfiI GAWTC 7 cut(s) 9, 270, 377, 725, 736, 1091, 1153
Tru1I TTAA 4 cut(s) 509, 1023, 1251, 1304
Tru9I TTAA 4 cut(s) 509, 1023, 1251, 1304
TscAI CASTG 4 cut(s) 19, 363, 1054, 1188
TseFI GTSAC 2 cut(s) 700, 776
TseI GCWGC 1 cut(s) 409
Tsp45I GTSAC 2 cut(s) 700, 776
TspDTI ATGAA 4 cut(s) 209, 465, 899, 1066
TspRI CASTG 4 cut(s) 19, 363, 1054, 1188
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 8 cut(s) 108, 133, 186, 193, 467, 969, 1111, 1315
XceI RCATGY 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 896
XhoI CTCGAG 1 cut(s) 75
XmiI GTMKAC 1 cut(s) 1243
XspI CTAG 1 cut(s) 567
Zsp2I ATGCAT 1 cut(s) 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.