RLG00000023953

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003953
Physical Location & Seq
Reverse (-)
30370874 .. 30374655
3782 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023953

Sequence Viewer

Length: 714 bp
ATGGCTGAAGCTCAGGTTGCTGTAGACAGATTCAGTGAACTCCCACCGGAAATCGCCCATCACATTCTGGCAGGGTTTTGCAAATGGGTCCCCTACTGTTGTAGGGAAGGTTTCACACCTGCCCCATTGGGCAATGTTTGGTACTTGCTTATGTCTACTTGGTGCAGTATTGATGACAACCTTGTGCCAGCCATGACCTCTCTTTTCAGGGCTGTGCCTAATTTGACTACTTTGAACGTATCATCATCTCCTGAGTTTCCTTTTCATGGTGGTGGTGATAATGTATCTGGATTTGATAGGGGATATTGGGAACTGCAGAGGCTTGATTTTGTTTCTAAGCTAGAGGAGGTAACCATAGAGCTTACCACTGGGTCCAATGGATTTGAATTAGCAAGATTCCGATCAAGACTCTCTCTGGGAATTCATCGATATCTCCCACGACAGCCTCCCCACCCCATCTCTGATGCTAAACCACCACAAAACTTCGAGCTGATTGGGCCCAACACTTCATTCGACTCTCCAATCGCTTCGCCCGTCGTTGACTCAATCCGAGCCCACACCCGCCGTCGCCAGACCCCTCTCGTTCGCCTTCTTGATTTGCCATTCCAGAGCCCTCTCAATTTCAATGACTGTCGTGGTCATGATGATGATCACTTCGGCAGTGACGACGAGGACGAGGACGAGTACGGCCTTGATGACGAGCTGGTGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like FBD

Protein Analysis

238

Amino Acids

26.67

Weight (kDa)

4.75

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
Acc36I ACCTGC 1 cut(s) 127
AccB1I GGYRCC 1 cut(s) 706
AccI GTMKAC 2 cut(s) 24, 155
AciI CCGC 1 cut(s) 562
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 2 cut(s) 143, 686
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 3 cut(s) 235, 386, 625
AjuI GAANNNNNNNTTGG 2 cut(s) 494, 526
AluBI AGCT 5 cut(s) 11, 340, 361, 490, 703
AluI AGCT 5 cut(s) 11, 340, 361, 490, 703
AoxI GGCC 2 cut(s) 497, 688
ApaI GGGCCC 1 cut(s) 501
ApoI RAATTY 1 cut(s) 420
AspS9I GGNCC 4 cut(s) 88, 372, 497, 498
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 2 cut(s) 88, 372
BaeGI GKGCMC 1 cut(s) 501
BanI GGYRCC 1 cut(s) 706
BanII GRGCYC 3 cut(s) 501, 556, 614
BccI CCATC 2 cut(s) 66, 464
BceAI ACGGC 2 cut(s) 549, 703
BclI TGATCA 1 cut(s) 649
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 2 cut(s) 21, 314
BfuAI ACCTGC 1 cut(s) 127
Bme18I GGWCC 2 cut(s) 88, 372
BmgT120I GGNCC 4 cut(s) 88, 372, 497, 498
BmiI GGNNCC 5 cut(s) 89, 90, 373, 499, 708
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 454
BmuI ACTGGG 1 cut(s) 378
Bpu10I CCTNAGC 1 cut(s) 12
Bsa29I ATCGAT 1 cut(s) 427
BsaBI GATNNNNATC 2 cut(s) 400, 648
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 139
Bse8I GATNNNNATC 2 cut(s) 400, 648
BseCI ATCGAT 1 cut(s) 427
BseJI GATNNNNATC 2 cut(s) 400, 648
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 26, 243
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 501
BsgI GTGCAG 1 cut(s) 184
BshFI GGCC 2 cut(s) 499, 690
BshNI GGYRCC 1 cut(s) 706
BshVI ATCGAT 1 cut(s) 427
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 2 cut(s) 499, 690
Bsp120I GGGCCC 1 cut(s) 497
Bsp1286I GDGCHC 3 cut(s) 501, 556, 614
Bsp143I GATC 2 cut(s) 401, 649
BspACI CCGC 1 cut(s) 562
BspANI GGCC 2 cut(s) 499, 690
BspCNI CTCAG 2 cut(s) 25, 244
BspDI ATCGAT 1 cut(s) 427
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 5 cut(s) 89, 90, 373, 499, 708
BspMAI CTGCAG 1 cut(s) 318
BspMI ACCTGC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 706
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 373
BssMI GATC 2 cut(s) 401, 649
Bst4CI ACNGT 2 cut(s) 98, 632
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 3 cut(s) 12, 252, 336
BstEII GGTNACC 1 cut(s) 349
BstKTI GATC 2 cut(s) 404, 652
BstMBI GATC 2 cut(s) 401, 649
BstMWI GCNNNNNNNGC 2 cut(s) 17, 496
BstPI GGTNACC 1 cut(s) 349
BstSFI CTRYAG 2 cut(s) 21, 314
BstSLI GKGCMC 1 cut(s) 501
Bsu15I ATCGAT 1 cut(s) 427
BsuRI GGCC 2 cut(s) 499, 690
BsuTUI ATCGAT 1 cut(s) 427
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 3 cut(s) 40, 366, 667
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 189
CciI TCATGA 1 cut(s) 640
Cfr13I GGNCC 4 cut(s) 88, 372, 497, 498
ClaI ATCGAT 1 cut(s) 427
Csp6I GTAC 2 cut(s) 142, 685
CviAII CATG 3 cut(s) 193, 266, 641
CviQI GTAC 2 cut(s) 142, 685
DdeI CTNAG 3 cut(s) 12, 252, 336
DpnI GATC 2 cut(s) 403, 651
DpnII GATC 2 cut(s) 401, 649
Eco24I GRGCYC 3 cut(s) 501, 556, 614
Eco32I GATATC 1 cut(s) 431
Eco47I GGWCC 2 cut(s) 88, 372
Eco57I CTGAAG 1 cut(s) 27
Eco91I GGTNACC 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 420
EcoRV GATATC 1 cut(s) 431
EcoT38I GRGCYC 3 cut(s) 501, 556, 614
FaeI CATG 3 cut(s) 196, 269, 644
FaiI YATR 6 cut(s) 152, 194, 267, 356, 642, 712
FaqI GGGAC 1 cut(s) 74
FatI CATG 3 cut(s) 192, 265, 640
FauI CCCGC 1 cut(s) 569
FbaI TGATCA 1 cut(s) 649
FblI GTMKAC 2 cut(s) 24, 155
FriOI GRGCYC 3 cut(s) 501, 556, 614
FspBI CTAG 1 cut(s) 341
HaeIII GGCC 2 cut(s) 499, 690
HapII CCGG 1 cut(s) 47
Hin1II CATG 3 cut(s) 196, 269, 644
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HinfI GANTC 5 cut(s) 30, 396, 408, 515, 542
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 4 cut(s) 25, 38, 156, 541
Hpy188I TCNGA 3 cut(s) 401, 463, 551
Hpy188III TCNNGA 6 cut(s) 251, 288, 405, 593, 607, 641
Hpy8I GTNNAC 4 cut(s) 25, 38, 156, 541
Hpy99I CGWCG 3 cut(s) 539, 570, 671
HpyAV CCTTC 2 cut(s) 101, 599
HpyCH4III ACNGT 2 cut(s) 98, 632
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 81, 165, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 496
HpyF3I CTNAG 3 cut(s) 12, 252, 336
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 3 cut(s) 196, 269, 644
KflI GGGWCCC 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 2 cut(s) 401, 649
LweI GCATC 1 cut(s) 454
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 2 cut(s) 349, 662
MalI GATC 2 cut(s) 403, 651
MboI GATC 2 cut(s) 401, 649
MhlI GDGCHC 3 cut(s) 501, 556, 614
MluCI AATT 4 cut(s) 220, 386, 420, 619
MlyI GAGTC 3 cut(s) 402, 509, 536
MnlI CCTC 9 cut(s) 208, 312, 337, 340, 456, 588, 624, 664, 670
MslI CAYNNNNRTG 2 cut(s) 270, 645
MspI CCGG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 17, 496
NdeII GATC 2 cut(s) 401, 649
NlaIII CATG 3 cut(s) 196, 269, 644
NlaIV GGNNCC 5 cut(s) 89, 90, 373, 499, 708
NmuCI GTSAC 1 cut(s) 662
PagI TCATGA 1 cut(s) 640
PaqCI CACCTGC 1 cut(s) 127
PcsI WCGNNNNNNNCGW 3 cut(s) 531, 663, 672
PfeI GAWTC 2 cut(s) 30, 396
PleI GAGTC 3 cut(s) 402, 509, 536
PpsI GAGTC 3 cut(s) 402, 509, 536
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
PspEI GGTNACC 1 cut(s) 349
PspN4I GGNNCC 5 cut(s) 89, 90, 373, 499, 708
PspOMI GGGCCC 1 cut(s) 497
PspPI GGNCC 4 cut(s) 88, 372, 497, 498
PspPPI RGGWCCY 1 cut(s) 88
PstI CTGCAG 1 cut(s) 318
RsaI GTAC 2 cut(s) 143, 686
RsaNI GTAC 2 cut(s) 142, 685
RseI CAYNNNNRTG 2 cut(s) 270, 645
Sau3AI GATC 2 cut(s) 401, 649
Sau96I GGNCC 4 cut(s) 88, 372, 497, 498
SchI GAGTC 3 cut(s) 402, 509, 536
SduI GDGCHC 3 cut(s) 501, 556, 614
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 2 cut(s) 21, 314
SinI GGWCC 2 cut(s) 88, 372
SmiMI CAYNNNNRTG 2 cut(s) 270, 645
Sse9I AATT 4 cut(s) 220, 386, 420, 619
SsiI CCGC 1 cut(s) 562
SspMI CTAG 1 cut(s) 341
TaaI ACNGT 2 cut(s) 98, 632
TaiI ACGT 1 cut(s) 240
TaqI TCGA 3 cut(s) 427, 486, 513
TasI AATT 4 cut(s) 220, 386, 420, 619
TfiI GAWTC 2 cut(s) 30, 396
TscAI CASTG 3 cut(s) 40, 373, 667
TseFI GTSAC 1 cut(s) 662
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 3 cut(s) 254, 413, 498
TspRI CASTG 3 cut(s) 40, 373, 667
VpaK11BI GGWCC 2 cut(s) 88, 372
XapI RAATTY 1 cut(s) 420
XmiI GTMKAC 2 cut(s) 24, 155
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.