Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003953

Physical Location & Seq

Genomic Coordinates Forward (+)

18058299 .. 18072751

Gene Structure 14453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG188400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1824 bp

ATGACTTCAACATGTTTGAGATTCTTTGCAGTATTAACAAGGTTCCCTCCTTCTTGTGTCTTTCTTTGCGAGTCTTTGAGGTACTTAACCCTGGACATGAAGTGTGCAGTTCTTGAAGCTCCCTCCTTTTCTACTTCTCCTACCTCTAATCTTGTGTCCTTGATTTTGAGAAATGTATCTATAGAAGATGATGGAGGGTTTTACAAATGGGTCTCCTACTATTGTAGGTTTATTAAGAAATTGGGGCTAGAACGGGTTTATGGGTTGGAAAACATCACCATTGAAAGTTCGTCTTTGGAGTCATTCTCGGTCCAGTGTCCCTGTTATTTTGACATTGACCGTCTTGTAATAGCTGGTGATAAAATTGAAAATATAGATATAGATTGGGAGTATGATTCAGACAAGTGCAGCAATAAAAGTTTGTTGAATATTTCGGCCCCAAATCTGAAGTGTCTGAAATGGGTTGGGAATATGTTGAATCATCAGCATCTTGGGGAAATGAATTGTTTGGAACAAGTTGAGATTTCTCTGACTTCTTATGATGTTAATGATTTGGATAGCGTTTCAGAGAAGTTCTTGTGCCGTATAAGTAGTGTTAAAGTTCTTCTTCTAGACCAACTGACTGCCAAGACTTTGTTCAGGGAAGGTTTCACACCTGCCCCATTGGGCAATGCTTGGTACTTGCTTATGTCTATTTGGTGCTGTATTGATGACAACCTTGTGCCAGCCATGACCTCTCTTTTCAGGGCTGTGCCTAATTTGACTACTTTGAACGTATCATCATCTCCCGAGTTTCCTTTTCGTGATGGTGGTGATAATGTATCTGGATTTGATAGGGGATATTGGGAACTCCAAGGGCTTGATTTTGTTTCTAAGCTGGAGGAGGTAACCATAGAGCTTGTCACTGGGTCCAATGGATTTGAAGTAGCAAGGTACATGCTTGAGCATCCTGATGATGGAGGGTTTTGCAAATGGGTCTCCTACTGTTGTAGGTTTATTAAGAAATTGGGGCTGGAACGGGTTTATGGGTTGGAAACCATCGCCATTGAAAGTTCGTCTTTGGAGTCATTCTTGGTCCAGTGTCCCTGTTATTTTGACATTGACCGTCTTGTAATAGCTGGTAATAAAATTGAAAATATAGATATAGATTGGGAGTATGATATAGACAAGCGCAGCAATAAAAGTTTGTTGAATGTTTCGGCCCCAAATCTGAAGTGTCTGAAATGGGTTGGGAATATGTTGAATCATCAGCATCTTGGGGAAATGAATTGTTTGGAACAAGTTGAGATTTCTCTTACTTCGTATGATGTAAATGATTTGGATAGCGTTTCTGAACAGCTCTTGTGCAGTATAAGCAGTGTTAAAGTTCTTCTTCTAGACCAAGTGACTGCCAAGGGAAGGTTCACACCTGCCCCATTGGGCAGTGCTTGGTACTTGCTTATGTCTATTTGGGGCAGTATTGATGACAACCTTGCCCCAGCCATGACCCCTCTTTTCAGGGCTGTACCTAATTTGGCTATTTTGAACTTTCCTTTTCGTGGTGGTGGTGATAAGGTATCTGGATTTGATAGGGGATATTGGGAACTCCAAGAGCTTGATTTTGTTTCTAAGCTGGAGGAGGTAACCATAGAGCTTACCACTGGCTCCAAGGGATTTGAATTAGCAAGGTACATGCTTGAGCATACTGGTAATTTGAAGAAAATGTTTGTTATTACTACACCCGATCAATCAAGTTTAGTACCCGAAATATGGAGAACCAACCGTACTTCCAATGCTAGAGTTGTCTTTCTGGAAAAACGAAATCTGCCTTGTCATCGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

607

Amino Acids

68.65

Weight (kDa)

4.89

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g19053 FvH4_6g19370 FvH4_6g22710 FvH4_6g22710 FvH4_6g33902 FvH4_7g12363
malus_domestica	MD14G1025800.v1.1
pyrus_communis	pycom14g02500
rosa_chinensis	RchiOBHm_Chr3g0481121
rosa_laevigata	RLG00000023419 RLG00000023953
rosa_multiflora	Rmu_sc0001551.1_g000014 Rmu_sc0001551.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400620 Rroxscaffold_6G00407510
rosa_rugosa	Rorug03G0138200 Rorug03G0138500 Rorug03G0138600
rosa_samantha	Rh3AG188300 Rh3AG188400 Rh3AG240700 Rh3AG316900 Rh3BG217200 Rh3BG217400 Rh3BG217600 Rh3BG276400 Rh3CG213300 Rh3CG213500 Rh3DG267800 Rh7DG163400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	664, 1417
Acc36I	ACCTGC	2 cut(s)	664, 1417
AcuI	CTGAAG	2 cut(s)	467, 1232
AfaI	GTAC	8 cut(s)	83, 680, 935, 1433, 1506, 1670, 1740, 1765
AfiI	CCNNNNNNNGG	4 cut(s)	956, 1398, 1538, 1749
AflIII	ACRYGT	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	4 cut(s)	620, 652, 1385, 1417
AluBI	AGCT	9 cut(s)	119, 353, 877, 898, 1118, 1339, 1594, 1612, 1633
AluI	AGCT	9 cut(s)	119, 353, 877, 898, 1118, 1339, 1594, 1612, 1633
Alw26I	GTCTC	2 cut(s)	217, 982
Ama87I	CYCGRG	1 cut(s)	788
AoxI	GGCC	2 cut(s)	435, 1200
ApeKI	GCWGC	2 cut(s)	408, 1173
AspLEI	GCGC	1 cut(s)	1173
AspS9I	GGNCC	5 cut(s)	310, 436, 909, 1075, 1201
AsuHPI	GGTGA	4 cut(s)	268, 368, 824, 1559
AvaI	CYCGRG	1 cut(s)	788
AvaII	GGWCC	3 cut(s)	310, 909, 1075
BbvI	GCAGC	2 cut(s)	420, 1185
BccI	CCATC	4 cut(s)	185, 800, 950, 1046
BceAI	ACGGC	1 cut(s)	567
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	217, 982
BfaI	CTAG	4 cut(s)	248, 611, 1376, 1776
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	2 cut(s)	664, 1417
BisI	GCNGC	2 cut(s)	409, 1174
BlsI	GCNGC	2 cut(s)	410, 1175
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	3 cut(s)	310, 909, 1075
BmeT110I	CYCGRG	1 cut(s)	788
BmgT120I	GGNCC	5 cut(s)	310, 436, 909, 1075, 1201
BmiI	GGNNCC	5 cut(s)	44, 438, 910, 1203, 1645
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	915
BmsI	GCATC	3 cut(s)	496, 955, 1261
BmuI	ACTGGG	1 cut(s)	915
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpmI	CTGGAG	2 cut(s)	899, 1634
BpuEI	CTTGAG	2 cut(s)	962, 1697
BsaI	GGTCTC	2 cut(s)	217, 982
BsaJI	CCNNGG	4 cut(s)	90, 853, 1392, 1647
Bsc4I	CCNNNNNNNGG	4 cut(s)	956, 1398, 1538, 1749
Bse1I	ACTGG	5 cut(s)	313, 910, 1078, 1645, 1690
Bse3DI	GCAATG	1 cut(s)	676
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	4 cut(s)	90, 853, 1392, 1647
BseGI	GGATG	1 cut(s)	946
BseLI	CCNNNNNNNGG	4 cut(s)	956, 1398, 1538, 1749
BseMI	GCAATG	1 cut(s)	676
BseNI	ACTGG	5 cut(s)	313, 910, 1078, 1645, 1690
BseRI	GAGGAG	2 cut(s)	896, 1631
BseXI	GCAGC	2 cut(s)	420, 1185
BseYI	CCCAGC	1 cut(s)	1477
BsgI	GTGCAG	3 cut(s)	126, 427, 1366
BshFI	GGCC	2 cut(s)	437, 1202
BsiHKCI	CYCGRG	1 cut(s)	788
BslFI	GGGAC	2 cut(s)	303, 1068
BslI	CCNNNNNNNGG	4 cut(s)	956, 1398, 1538, 1749
BsmAI	GTCTC	2 cut(s)	217, 982
BsmFI	GGGAC	2 cut(s)	303, 1068
BsnI	GGCC	2 cut(s)	437, 1202
Bso31I	GGTCTC	2 cut(s)	217, 982
BsoBI	CYCGRG	1 cut(s)	788
Bsp143I	GATC	1 cut(s)	1723
BspANI	GGCC	2 cut(s)	437, 1202
BspLI	GGNNCC	5 cut(s)	44, 438, 910, 1203, 1645
BspMI	ACCTGC	2 cut(s)	664, 1417
BspTNI	GGTCTC	2 cut(s)	217, 982
BsrDI	GCAATG	1 cut(s)	676
BsrI	ACTGG	5 cut(s)	313, 910, 1078, 1645, 1690
BssECI	CCNNGG	4 cut(s)	90, 853, 1392, 1647
BssMI	GATC	1 cut(s)	1723
BssT1I	CCWWGG	3 cut(s)	853, 1392, 1647
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	4 cut(s)	341, 986, 1106, 1763
BstC8I	GCNNGC	1 cut(s)	726
BstDEI	CTNAG	2 cut(s)	873, 1608
BstEII	GGTNACC	2 cut(s)	886, 1621
BstF5I	GGATG	1 cut(s)	946
BstHHI	GCGC	1 cut(s)	1173
BstKTI	GATC	1 cut(s)	1726
BstMAI	GTCTC	2 cut(s)	217, 982
BstMBI	GATC	1 cut(s)	1723
BstMWI	GCNNNNNNNGC	1 cut(s)	1353
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	3 cut(s)	15, 940, 1675
BstPI	GGTNACC	2 cut(s)	886, 1621
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	420, 1185
BsuRI	GGCC	2 cut(s)	437, 1202
BtgZI	GCGATG	1 cut(s)	1024
BtsCI	GGATG	1 cut(s)	946
BtsI	GCAGTG	2 cut(s)	1363, 1429
BtsIMutI	CAGTG	6 cut(s)	320, 903, 1085, 1363, 1429, 1638
BveI	ACCTGC	2 cut(s)	664, 1417
Cac8I	GCNNGC	1 cut(s)	726
CfoI	GCGC	1 cut(s)	1173
Cfr13I	GGNCC	5 cut(s)	310, 436, 909, 1075, 1201
Csp6I	GTAC	8 cut(s)	82, 679, 934, 1432, 1505, 1669, 1739, 1764
CviAII	CATG	6 cut(s)	12, 97, 730, 937, 1483, 1672
CviQI	GTAC	8 cut(s)	82, 679, 934, 1432, 1505, 1669, 1739, 1764
DdeI	CTNAG	2 cut(s)	873, 1608
DpnI	GATC	1 cut(s)	1725
DpnII	GATC	1 cut(s)	1723
Eco130I	CCWWGG	3 cut(s)	853, 1392, 1647
Eco31I	GGTCTC	2 cut(s)	217, 982
Eco47I	GGWCC	3 cut(s)	310, 909, 1075
Eco57I	CTGAAG	2 cut(s)	467, 1232
Eco88I	CYCGRG	1 cut(s)	788
Eco91I	GGTNACC	2 cut(s)	886, 1621
EcoO65I	GGTNACC	2 cut(s)	886, 1621
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	3 cut(s)	853, 1392, 1647
ErhI	CCWWGG	3 cut(s)	853, 1392, 1647
FaeI	CATG	6 cut(s)	15, 100, 733, 940, 1486, 1675
FalI	AAGNNNNNCTT	8 cut(s)	277, 309, 591, 623, 1042, 1074, 1356, 1388
FaqI	GGGAC	2 cut(s)	303, 1068
FatI	CATG	6 cut(s)	11, 96, 729, 936, 1482, 1671
Fnu4HI	GCNGC	2 cut(s)	409, 1174
FokI	GGATG	1 cut(s)	933
Fsp4HI	GCNGC	2 cut(s)	409, 1174
FspBI	CTAG	4 cut(s)	248, 611, 1376, 1776
GlaI	GCGC	1 cut(s)	1172
GluI	GCNGC	2 cut(s)	409, 1174
GsaI	CCCAGC	1 cut(s)	1481
GsuI	CTGGAG	2 cut(s)	899, 1634
HaeIII	GGCC	2 cut(s)	437, 1202
HhaI	GCGC	1 cut(s)	1173
Hin1II	CATG	6 cut(s)	15, 100, 733, 940, 1486, 1675
Hin6I	GCGC	1 cut(s)	1171
HinP1I	GCGC	1 cut(s)	1171
HinfI	GANTC	7 cut(s)	21, 71, 299, 395, 478, 1064, 1243
HphI	GGTGA	4 cut(s)	268, 368, 824, 1559
Hpy166II	GTNNAC	1 cut(s)	1404
Hpy188I	TCNGA	8 cut(s)	400, 447, 456, 531, 568, 1212, 1221, 1333
Hpy188III	TCNNGA	9 cut(s)	113, 611, 788, 803, 825, 950, 1376, 1560, 1790
Hpy8I	GTNNAC	1 cut(s)	1404
HpyAV	CCTTC	3 cut(s)	60, 638, 1392
HpyCH4III	ACNGT	4 cut(s)	341, 986, 1106, 1763
HpyCH4IV	ACGT	1 cut(s)	774
HpyCH4V	TGCA	5 cut(s)	29, 107, 408, 969, 1347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1353
HpyF3I	CTNAG	2 cut(s)	873, 1608
HpySE526I	ACGT	1 cut(s)	774
Hsp92II	CATG	6 cut(s)	15, 100, 733, 940, 1486, 1675
HspAI	GCGC	1 cut(s)	1171
Kzo9I	GATC	1 cut(s)	1723
LmnI	GCTCC	2 cut(s)	124, 1649
Lsp1109I	GCAGC	2 cut(s)	420, 1185
LweI	GCATC	3 cut(s)	496, 955, 1261
MaeI	CTAG	4 cut(s)	248, 611, 1376, 1776
MaeII	ACGT	1 cut(s)	774
MaeIII	GTNAC	4 cut(s)	886, 901, 1384, 1621
MalI	GATC	1 cut(s)	1725
MboI	GATC	1 cut(s)	1723
MboII	GAAGA	6 cut(s)	197, 596, 599, 1361, 1364, 1708
MlyI	GAGTC	3 cut(s)	80, 308, 1073
MmeI	TCCRAC	2 cut(s)	246, 1011
MseI	TTAA	8 cut(s)	35, 86, 234, 546, 597, 999, 1362, 1822
MslI	CAYNNNNRTG	1 cut(s)	951
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	1353
NdeII	GATC	1 cut(s)	1723
NlaIII	CATG	6 cut(s)	15, 100, 733, 940, 1486, 1675
NlaIV	GGNNCC	5 cut(s)	44, 438, 910, 1203, 1645
NmuCI	GTSAC	2 cut(s)	901, 1384
NspI	RCATGY	3 cut(s)	15, 940, 1675
PaqCI	CACCTGC	2 cut(s)	664, 1417
PciI	ACATGT	1 cut(s)	11
PfeI	GAWTC	4 cut(s)	21, 395, 478, 1243
PkrI	GCNGC	2 cut(s)	410, 1175
PleI	GAGTC	3 cut(s)	79, 307, 1072
PpsI	GAGTC	3 cut(s)	79, 307, 1072
PscI	ACATGT	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	90
PspEI	GGTNACC	2 cut(s)	886, 1621
PspFI	CCCAGC	1 cut(s)	1477
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	5 cut(s)	44, 438, 910, 1203, 1645
PspPI	GGNCC	5 cut(s)	310, 436, 909, 1075, 1201
PsrI	GAACNNNNNNTAC	2 cut(s)	1747, 1779
RsaI	GTAC	8 cut(s)	83, 680, 935, 1433, 1506, 1670, 1740, 1765
RsaNI	GTAC	8 cut(s)	82, 679, 934, 1432, 1505, 1669, 1739, 1764
RseI	CAYNNNNRTG	1 cut(s)	951
SaqAI	TTAA	8 cut(s)	35, 86, 234, 546, 597, 999, 1362, 1822
SatI	GCNGC	2 cut(s)	409, 1174
Sau3AI	GATC	1 cut(s)	1723
Sau96I	GGNCC	5 cut(s)	310, 436, 909, 1075, 1201
SchI	GAGTC	3 cut(s)	80, 308, 1073
ScrFI	CCNGG	1 cut(s)	92
SfaNI	GCATC	3 cut(s)	496, 955, 1261
SfcI	CTRYAG	1 cut(s)	180
SinI	GGWCC	3 cut(s)	310, 909, 1075
SmiMI	CAYNNNNRTG	1 cut(s)	951
SmlI	CTYRAG	2 cut(s)	941, 1676
SmoI	CTYRAG	2 cut(s)	941, 1676
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	4 cut(s)	248, 611, 1376, 1776
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	3 cut(s)	853, 1392, 1647
TaaI	ACNGT	4 cut(s)	341, 986, 1106, 1763
TaiI	ACGT	1 cut(s)	777
TaqII	GACCGA	1 cut(s)	298
TfiI	GAWTC	4 cut(s)	21, 395, 478, 1243
Tru1I	TTAA	8 cut(s)	35, 86, 234, 546, 597, 999, 1362, 1822
Tru9I	TTAA	8 cut(s)	35, 86, 234, 546, 597, 999, 1362, 1822
TscAI	CASTG	6 cut(s)	320, 910, 1085, 1363, 1429, 1645
TseFI	GTSAC	2 cut(s)	901, 1384
TseI	GCWGC	2 cut(s)	408, 1173
Tsp45I	GTSAC	2 cut(s)	901, 1384
TspDTI	ATGAA	3 cut(s)	113, 515, 1280
TspRI	CASTG	6 cut(s)	320, 910, 1085, 1363, 1429, 1645
VpaK11BI	GGWCC	3 cut(s)	310, 909, 1075
XbaI	TCTAGA	2 cut(s)	610, 1375
XceI	RCATGY	3 cut(s)	15, 940, 1675
XspI	CTAG	4 cut(s)	248, 611, 1376, 1776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.