Rh3BG217600

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003953
Physical Location & Seq
Forward (+)
19640132 .. 19654584
14453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG217600.1

Sequence Viewer

Length: 1392 bp
ATGACTTCAACATGTTTGAGATTCTTTGCAGTATTAACAAGGTTCCCTCCTTCTTGTGTCTTTCTTTGCGAGTCTTTGAGGTACTTAACCCTGGACATGAAGTGTGCAGTTCTTGAAGCTCCCTCCTTTTCTACTTCTCCTACCTCTAATCTTGTGTCCTTGATTTTGAGAAATGTATCTATAGAAGATGATGGAGGGTTTTACAAATGGGTCTCCTACTATTGTAGGTTTATTAAGAAATTGGGGCTAGAACGGGTTTATGGGTTGGAAAACATCACCATTGAAAGTTCGTCTTTGGAGTCATTCTCGGTCCAGTGTCCCTGTTATTTTGACATTGACCGTCTTGTAATAGCTGGTGATAAAATTGAAAATATAGATATAGATTGGGAGTATGATTCAGACAAGTGCAGCAATAAAAGTTTGTTGAATATTTCGGCCCCAAATCTGAAGTGTCTGAAATGGGTTGGGAATATGTTGAATCATCAGCATCTTGGGGAAATGAATTGTTTGGAACAAGTTGAGATTTCTCTGACTTCTTATGATGTTAATGATTTGGATAGCGTTTCAGAGAAGTTCTTGTGCCGTATAAGTAGTGTTAAAGTTCTTCTTCTAGACCAACTGACTGCCAAGACTTTGTTCAGGGAAGGTTTCACACCTGCCCCATTGGGCAATGCTTGGTACTTGCTTATGTCTATTTGGTGCTGTATTGATGACAACCTTGTGCCAGCCATGACCTCTCTTTTCAGGGCTGTGCCTAATTTGACTACTTTGAACGTATCATCATCTCCCGAGTTTCCTTTTCGTGATGGTGGTGATAATGTATCTGGATTTGATAGGGGATATTGGGAACTCCAAGGGCTTGATTTTGTTTCTAAGCTGGAGGAGGTAACCATAGAGCTTGTCACTGGGTCCAATGGATTTGAAGTAGCAAGGTACATGCTTGAGCATCCTGACATTGTTCAGGGAAGGTTCACACCTGCCCCATTGGGCAGTGCTTGGTACTTGCTTATGTCTATTTGGGGCAGTATTGATGACAACCTTGCCCCAGCCATGACCCCTCTTTTCAGGGCTGTACCTAATTTGGCTATTTTGAACTTTCCTTTTCGTGGTGGTGGTGATAAGGTATCTGGATTTGATAGGGGATATTGGGAACTCCAAGAGCTTGATTTTGTTTCTAAGCTGGAGGAGGTAACCATAGAGCTTACCACTGGCTCCAAGGGATTTGAATTAGCAAGGTACATGCTTGAGCATACTGGTAATTTGAAGAAAATGTTTGTTATTACTACACCCGATCAATCAAGTTTAGTACCCGAAATATGGAGAACCAACCGTACTTCCAATGCTAGAGTTGTCTTTCTGGAAAAACGAAATCTGCCTTGTCATCGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

463

Amino Acids

52.35

Weight (kDa)

4.94

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 664, 985
Acc36I ACCTGC 2 cut(s) 664, 985
AcuI CTGAAG 1 cut(s) 467
AfaI GTAC 8 cut(s) 83, 680, 935, 1001, 1074, 1238, 1308, 1333
AfiI CCNNNNNNNGG 2 cut(s) 1106, 1317
AflIII ACRYGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 620, 652
AluBI AGCT 7 cut(s) 119, 353, 877, 898, 1162, 1180, 1201
AluI AGCT 7 cut(s) 119, 353, 877, 898, 1162, 1180, 1201
Alw26I GTCTC 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 788
AoxI GGCC 1 cut(s) 435
ApeKI GCWGC 1 cut(s) 408
AspS9I GGNCC 3 cut(s) 310, 436, 909
AsuHPI GGTGA 4 cut(s) 268, 368, 824, 1127
AvaI CYCGRG 1 cut(s) 788
AvaII GGWCC 2 cut(s) 310, 909
BbvI GCAGC 1 cut(s) 420
BccI CCATC 2 cut(s) 185, 800
BceAI ACGGC 1 cut(s) 567
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 3 cut(s) 248, 611, 1344
BfmI CTRYAG 1 cut(s) 180
BfuAI ACCTGC 2 cut(s) 664, 985
BisI GCNGC 1 cut(s) 409
BlsI GCNGC 1 cut(s) 410
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 2 cut(s) 310, 909
BmeT110I CYCGRG 1 cut(s) 788
BmgT120I GGNCC 3 cut(s) 310, 436, 909
BmiI GGNNCC 4 cut(s) 44, 438, 910, 1213
BmrFI CCNGG 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 915
BmsI GCATC 2 cut(s) 496, 955
BmuI ACTGGG 1 cut(s) 915
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpmI CTGGAG 2 cut(s) 899, 1202
BpuEI CTTGAG 2 cut(s) 962, 1265
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 90, 853, 1215
Bsc4I CCNNNNNNNGG 2 cut(s) 1106, 1317
Bse1I ACTGG 4 cut(s) 313, 910, 1213, 1258
Bse3DI GCAATG 1 cut(s) 676
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 3 cut(s) 90, 853, 1215
BseGI GGATG 1 cut(s) 946
BseLI CCNNNNNNNGG 2 cut(s) 1106, 1317
BseMI GCAATG 1 cut(s) 676
BseNI ACTGG 4 cut(s) 313, 910, 1213, 1258
BseRI GAGGAG 2 cut(s) 896, 1199
BseXI GCAGC 1 cut(s) 420
BseYI CCCAGC 1 cut(s) 1045
BsgI GTGCAG 2 cut(s) 126, 427
BshFI GGCC 1 cut(s) 437
BsiHKCI CYCGRG 1 cut(s) 788
BslFI GGGAC 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 1106, 1317
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 1 cut(s) 437
Bso31I GGTCTC 1 cut(s) 217
BsoBI CYCGRG 1 cut(s) 788
Bsp143I GATC 1 cut(s) 1291
BspANI GGCC 1 cut(s) 437
BspLI GGNNCC 4 cut(s) 44, 438, 910, 1213
BspMI ACCTGC 2 cut(s) 664, 985
BspTNI GGTCTC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 676
BsrI ACTGG 4 cut(s) 313, 910, 1213, 1258
BssECI CCNNGG 3 cut(s) 90, 853, 1215
BssMI GATC 1 cut(s) 1291
BssT1I CCWWGG 2 cut(s) 853, 1215
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 341, 1331
BstC8I GCNNGC 1 cut(s) 726
BstDEI CTNAG 2 cut(s) 873, 1176
BstEII GGTNACC 2 cut(s) 886, 1189
BstF5I GGATG 1 cut(s) 946
BstKTI GATC 1 cut(s) 1294
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 1 cut(s) 1291
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 3 cut(s) 15, 940, 1243
BstPI GGTNACC 2 cut(s) 886, 1189
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 420
BsuRI GGCC 1 cut(s) 437
BtsCI GGATG 1 cut(s) 946
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 4 cut(s) 320, 903, 997, 1206
BveI ACCTGC 2 cut(s) 664, 985
Cac8I GCNNGC 1 cut(s) 726
Cfr13I GGNCC 3 cut(s) 310, 436, 909
Csp6I GTAC 8 cut(s) 82, 679, 934, 1000, 1073, 1237, 1307, 1332
CviAII CATG 6 cut(s) 12, 97, 730, 937, 1051, 1240
CviQI GTAC 8 cut(s) 82, 679, 934, 1000, 1073, 1237, 1307, 1332
DdeI CTNAG 2 cut(s) 873, 1176
DpnI GATC 1 cut(s) 1293
DpnII GATC 1 cut(s) 1291
Eco130I CCWWGG 2 cut(s) 853, 1215
Eco31I GGTCTC 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 310, 909
Eco57I CTGAAG 1 cut(s) 467
Eco88I CYCGRG 1 cut(s) 788
Eco91I GGTNACC 2 cut(s) 886, 1189
EcoO65I GGTNACC 2 cut(s) 886, 1189
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 2 cut(s) 853, 1215
ErhI CCWWGG 2 cut(s) 853, 1215
FaeI CATG 6 cut(s) 15, 100, 733, 940, 1054, 1243
FalI AAGNNNNNCTT 4 cut(s) 277, 309, 591, 623
FaqI GGGAC 1 cut(s) 303
FatI CATG 6 cut(s) 11, 96, 729, 936, 1050, 1239
Fnu4HI GCNGC 1 cut(s) 409
FokI GGATG 1 cut(s) 933
Fsp4HI GCNGC 1 cut(s) 409
FspBI CTAG 3 cut(s) 248, 611, 1344
GluI GCNGC 1 cut(s) 409
GsaI CCCAGC 1 cut(s) 1049
GsuI CTGGAG 2 cut(s) 899, 1202
HaeIII GGCC 1 cut(s) 437
Hin1II CATG 6 cut(s) 15, 100, 733, 940, 1054, 1243
HinfI GANTC 5 cut(s) 21, 71, 299, 395, 478
HphI GGTGA 4 cut(s) 268, 368, 824, 1127
Hpy166II GTNNAC 1 cut(s) 972
Hpy188I TCNGA 5 cut(s) 400, 447, 456, 531, 568
Hpy188III TCNNGA 8 cut(s) 113, 611, 788, 803, 825, 950, 1128, 1358
Hpy8I GTNNAC 1 cut(s) 972
HpyAV CCTTC 3 cut(s) 60, 638, 960
HpyCH4III ACNGT 2 cut(s) 341, 1331
HpyCH4IV ACGT 1 cut(s) 774
HpyCH4V TGCA 3 cut(s) 29, 107, 408
HpyF3I CTNAG 2 cut(s) 873, 1176
HpySE526I ACGT 1 cut(s) 774
Hsp92II CATG 6 cut(s) 15, 100, 733, 940, 1054, 1243
Kzo9I GATC 1 cut(s) 1291
LmnI GCTCC 2 cut(s) 124, 1217
Lsp1109I GCAGC 1 cut(s) 420
LweI GCATC 2 cut(s) 496, 955
MaeI CTAG 3 cut(s) 248, 611, 1344
MaeII ACGT 1 cut(s) 774
MaeIII GTNAC 3 cut(s) 886, 901, 1189
MalI GATC 1 cut(s) 1293
MboI GATC 1 cut(s) 1291
MboII GAAGA 4 cut(s) 197, 596, 599, 1276
MluCI AATT 7 cut(s) 239, 363, 502, 757, 1078, 1226, 1258
MlyI GAGTC 2 cut(s) 80, 308
MmeI TCCRAC 1 cut(s) 246
MseI TTAA 6 cut(s) 35, 86, 234, 546, 597, 1390
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
NdeII GATC 1 cut(s) 1291
NlaIII CATG 6 cut(s) 15, 100, 733, 940, 1054, 1243
NlaIV GGNNCC 4 cut(s) 44, 438, 910, 1213
NmuCI GTSAC 1 cut(s) 901
NspI RCATGY 3 cut(s) 15, 940, 1243
PaqCI CACCTGC 2 cut(s) 664, 985
PciI ACATGT 1 cut(s) 11
PfeI GAWTC 3 cut(s) 21, 395, 478
PkrI GCNGC 1 cut(s) 410
PleI GAGTC 2 cut(s) 79, 307
PpsI GAGTC 2 cut(s) 79, 307
PscI ACATGT 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 90
PspEI GGTNACC 2 cut(s) 886, 1189
PspFI CCCAGC 1 cut(s) 1045
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 4 cut(s) 44, 438, 910, 1213
PspPI GGNCC 3 cut(s) 310, 436, 909
PsrI GAACNNNNNNTAC 2 cut(s) 1315, 1347
RsaI GTAC 8 cut(s) 83, 680, 935, 1001, 1074, 1238, 1308, 1333
RsaNI GTAC 8 cut(s) 82, 679, 934, 1000, 1073, 1237, 1307, 1332
SaqAI TTAA 6 cut(s) 35, 86, 234, 546, 597, 1390
SatI GCNGC 1 cut(s) 409
Sau3AI GATC 1 cut(s) 1291
Sau96I GGNCC 3 cut(s) 310, 436, 909
SchI GAGTC 2 cut(s) 80, 308
ScrFI CCNGG 1 cut(s) 92
SfaNI GCATC 2 cut(s) 496, 955
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 2 cut(s) 310, 909
SmlI CTYRAG 2 cut(s) 941, 1244
SmoI CTYRAG 2 cut(s) 941, 1244
Sse9I AATT 7 cut(s) 239, 363, 502, 757, 1078, 1226, 1258
SspI AATATT 1 cut(s) 430
SspMI CTAG 3 cut(s) 248, 611, 1344
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 2 cut(s) 853, 1215
TaaI ACNGT 2 cut(s) 341, 1331
TaiI ACGT 1 cut(s) 777
TaqII GACCGA 1 cut(s) 298
TasI AATT 7 cut(s) 239, 363, 502, 757, 1078, 1226, 1258
TfiI GAWTC 3 cut(s) 21, 395, 478
Tru1I TTAA 6 cut(s) 35, 86, 234, 546, 597, 1390
Tru9I TTAA 6 cut(s) 35, 86, 234, 546, 597, 1390
TscAI CASTG 4 cut(s) 320, 910, 997, 1213
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 1 cut(s) 408
Tsp45I GTSAC 1 cut(s) 901
TspDTI ATGAA 2 cut(s) 113, 515
TspRI CASTG 4 cut(s) 320, 910, 997, 1213
VpaK11BI GGWCC 2 cut(s) 310, 909
XbaI TCTAGA 1 cut(s) 610
XceI RCATGY 3 cut(s) 15, 940, 1243
XspI CTAG 3 cut(s) 248, 611, 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.