Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001551.1

Orthogroup ID

OG0003953

Physical Location & Seq

Genomic Coordinates Forward (+)

93259 .. 94625

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001551.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgggtagtgaagtacgttgccatgttgcagcttgtccccttcgtctggaaaaatattcattttgggttcaagcaaatgttactgtagaagatgatgatggtttttgcaaatgggtatcgttttactgcaaatccctcaaggaattgtcactttggggagtgcaacgcctcaagaatgtcaccattaagagctcgtctctggagttgttcgtgattcttcctccgcgtggtatcttccatctcaccatttctggtgagaaacttgaaaaaatacatgtagatttgggtttttcagcacacaccaattctttgaatgtttttgctccaaatctcaagtacctgacatggtttggaaacataatgaactatcattctcttggagagttgaattgcttggaacaagtctatatttgtgtctgtactatgttggctaaaggaaccgggcgaattcttgacttacacagcaaactcgataagttcttctgcgcattctataatgttcggaatttgggtgttggtattagcgcagatttggatgacaagatgattccatcaatagtctctcttctcagagcagtgcctaatttcactactttggatataagatcgcctcgcgataaagtctttttttccagtggacctgttgaatcatcattcgatagtggtcattggcaactgcaagaactcgacttcatcaatcggattaaggaggtaacaatagagattactgatgggtctaatggaattgagtttgcaaagtatgtgctggagaattctcctagtttgaaaataatgtccatcatatgtgcacccactcaaaaatcaagcttaatggaagggtttaggacaagtagggttataaaccctatcatgattgtctttctggctcaagacaacaaaaataaagtaatagttagtgctcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

308

Amino Acids

34.71

Weight (kDa)

7.57

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g19053 FvH4_6g19370 FvH4_6g22710 FvH4_6g22710 FvH4_6g33902 FvH4_7g12363
malus_domestica	MD14G1025800.v1.1
pyrus_communis	pycom14g02500
rosa_chinensis	RchiOBHm_Chr3g0481121
rosa_laevigata	RLG00000023419 RLG00000023953
rosa_multiflora	Rmu_sc0001551.1_g000014 Rmu_sc0001551.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400620 Rroxscaffold_6G00407510
rosa_rugosa	Rorug03G0138200 Rorug03G0138500 Rorug03G0138600
rosa_samantha	Rh3AG188300 Rh3AG188400 Rh3AG240700 Rh3AG316900 Rh3BG217200 Rh3BG217400 Rh3BG217600 Rh3BG276400 Rh3CG213300 Rh3CG213500 Rh3DG267800 Rh7DG163400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	860
Acc16I	TGCGCA	1 cut(s)	487
AccII	CGCG	2 cut(s)	226, 615
AciI	CCGC	1 cut(s)	224
AcsI	RAATTY	3 cut(s)	447, 505, 772
AfaI	GTAC	3 cut(s)	15, 338, 421
AfiI	CCNNNNNNNGG	2 cut(s)	46, 227
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	6 cut(s)	71, 266, 313, 388, 647, 787
AluBI	AGCT	3 cut(s)	32, 192, 828
AluI	AGCT	3 cut(s)	32, 192, 828
Alw21I	GWGCWC	3 cut(s)	194, 811, 922
Alw26I	GTCTC	2 cut(s)	201, 565
Alw44I	GTGCAC	1 cut(s)	807
ApaLI	GTGCAC	1 cut(s)	807
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	3 cut(s)	447, 505, 772
AspLEI	GCGC	2 cut(s)	488, 527
AspS9I	GGNCC	1 cut(s)	638
AsuC2I	CCSGG	1 cut(s)	442
AsuHPI	GGTGA	3 cut(s)	172, 235, 266
AvaII	GGWCC	1 cut(s)	638
BaeGI	GKGCMC	1 cut(s)	811
BanII	GRGCYC	1 cut(s)	194
Bbv12I	GWGCWC	3 cut(s)	194, 811, 922
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	5 cut(s)	92, 246, 559, 725, 806
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	201, 565
BfaI	CTAG	1 cut(s)	780
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	442
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	1 cut(s)	638
BmiI	GGNNCC	1 cut(s)	439
BmrFI	CCNGG	1 cut(s)	442
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	2 cut(s)	221, 788
BpuEI	CTTGAG	4 cut(s)	122, 155, 317, 873
BpuMI	CCSGG	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 227
Bse1I	ACTGG	1 cut(s)	633
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	2 cut(s)	46, 227
BseMII	CTCAG	1 cut(s)	583
BseNI	ACTGG	1 cut(s)	633
BseSI	GKGCMC	1 cut(s)	811
BseXI	GCAGC	1 cut(s)	41
Bsh1236I	CGCG	2 cut(s)	226, 615
BsiHKAI	GWGCWC	3 cut(s)	194, 811, 922
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	46, 227
BsmAI	GTCTC	2 cut(s)	201, 565
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	488
Bsp1286I	GDGCHC	3 cut(s)	194, 811, 922
Bsp143I	GATC	1 cut(s)	605
Bsp68I	TCGCGA	1 cut(s)	615
BspACI	CCGC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	582
BspFNI	CGCG	2 cut(s)	226, 615
BspHI	TCATGA	1 cut(s)	870
BspLI	GGNNCC	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	633
BssMI	GATC	1 cut(s)	605
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	570
BstDEI	CTNAG	1 cut(s)	569
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	2 cut(s)	226, 615
BstHHI	GCGC	2 cut(s)	488, 527
BstKTI	GATC	1 cut(s)	608
BstMAI	GTCTC	2 cut(s)	201, 565
BstMBI	GATC	1 cut(s)	605
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	440
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	811
BstUI	CGCG	2 cut(s)	226, 615
BstV1I	GCAGC	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	1 cut(s)	582
BtsIMutI	CAGTG	2 cut(s)	582, 640
BtuMI	TCGCGA	1 cut(s)	615
CciI	TCATGA	1 cut(s)	870
CfoI	GCGC	2 cut(s)	488, 527
Cfr13I	GGNCC	1 cut(s)	638
Csp6I	GTAC	3 cut(s)	14, 337, 420
CviAII	CATG	4 cut(s)	23, 275, 345, 871
CviJI	RGCY	5 cut(s)	32, 192, 431, 828, 887
CviKI_1	RGCY	5 cut(s)	32, 192, 431, 828, 887
CviQI	GTAC	3 cut(s)	14, 337, 420
DdeI	CTNAG	1 cut(s)	569
DpnI	GATC	1 cut(s)	607
DpnII	GATC	1 cut(s)	605
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Ecl136II	GAGCTC	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	638
Eco53kI	GAGCTC	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	192
EcoRI	GAATTC	2 cut(s)	447, 772
EcoT38I	GRGCYC	1 cut(s)	194
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	4 cut(s)	26, 278, 348, 874
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	4 cut(s)	22, 274, 344, 870
FauNDI	CATATG	1 cut(s)	803
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	1 cut(s)	780
FspI	TGCGCA	1 cut(s)	487
GlaI	GCGC	2 cut(s)	487, 526
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	2 cut(s)	221, 788
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	2 cut(s)	488, 527
Hin1II	CATG	4 cut(s)	26, 278, 348, 874
Hin6I	GCGC	2 cut(s)	486, 525
HinP1I	GCGC	2 cut(s)	486, 525
HindIII	AAGCTT	1 cut(s)	826
HinfI	GANTC	3 cut(s)	214, 547, 647
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	3 cut(s)	172, 235, 266
Hpy166II	GTNNAC	2 cut(s)	638, 809
Hpy188I	TCNGA	3 cut(s)	504, 572, 702
Hpy188III	TCNNGA	8 cut(s)	47, 172, 200, 211, 452, 614, 871, 890
Hpy8I	GTNNAC	2 cut(s)	638, 809
HpyAV	CCTTC	2 cut(s)	50, 830
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	7 cut(s)	29, 108, 129, 163, 679, 755, 809
HpyF3I	CTNAG	1 cut(s)	569
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	4 cut(s)	26, 278, 348, 874
HspAI	GCGC	2 cut(s)	486, 525
Kzo9I	GATC	1 cut(s)	605
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	9 cut(s)	32, 185, 237, 353, 454, 646, 654, 752, 869
Lsp1109I	GCAGC	1 cut(s)	41
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	4 cut(s)	79, 147, 178, 712
MalI	GATC	1 cut(s)	607
MboI	GATC	1 cut(s)	605
MboII	GAAGA	5 cut(s)	101, 209, 226, 472, 557
MhlI	GDGCHC	3 cut(s)	194, 811, 922
MluCI	AATT	8 cut(s)	143, 304, 388, 447, 505, 583, 744, 772
MnlI	CCTC	5 cut(s)	146, 179, 231, 621, 703
MseI	TTAA	3 cut(s)	186, 705, 830
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	1 cut(s)	442
Mva1269I	GAATGC	1 cut(s)	488
MvnI	CGCG	2 cut(s)	226, 615
NciI	CCSGG	1 cut(s)	442
NdeI	CATATG	1 cut(s)	803
NdeII	GATC	1 cut(s)	605
NlaIII	CATG	4 cut(s)	26, 278, 348, 874
NlaIV	GGNNCC	1 cut(s)	439
NmuCI	GTSAC	2 cut(s)	147, 178
NruI	TCGCGA	1 cut(s)	615
NsbI	TGCGCA	1 cut(s)	487
NspI	RCATGY	1 cut(s)	278
PagI	TCATGA	1 cut(s)	870
PciI	ACATGT	1 cut(s)	274
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	214, 547, 647
PkrI	GCNGC	1 cut(s)	31
PscI	ACATGT	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	860
Psp124BI	GAGCTC	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	1 cut(s)	638
RruI	TCGCGA	1 cut(s)	615
RsaI	GTAC	3 cut(s)	15, 338, 421
RsaNI	GTAC	3 cut(s)	14, 337, 420
SacI	GAGCTC	1 cut(s)	194
SaqAI	TTAA	3 cut(s)	186, 705, 830
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	605
Sau96I	GGNCC	1 cut(s)	638
ScrFI	CCNGG	1 cut(s)	442
SduI	GDGCHC	3 cut(s)	194, 811, 922
SetI	ASST	7 cut(s)	19, 34, 194, 342, 643, 714, 830
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	638
SmlI	CTYRAG	4 cut(s)	137, 170, 332, 888
SmoI	CTYRAG	4 cut(s)	137, 170, 332, 888
Sse9I	AATT	8 cut(s)	143, 304, 388, 447, 505, 583, 744, 772
SsiI	CCGC	1 cut(s)	224
SspI	AATATT	1 cut(s)	56
SspMI	CTAG	1 cut(s)	780
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	3 cut(s)	471, 657, 687
TasI	AATT	8 cut(s)	143, 304, 388, 447, 505, 583, 744, 772
TatI	WGTACW	1 cut(s)	419
TfiI	GAWTC	3 cut(s)	214, 547, 647
Tru1I	TTAA	3 cut(s)	186, 705, 830
Tru9I	TTAA	3 cut(s)	186, 705, 830
TscAI	CASTG	2 cut(s)	582, 640
TseFI	GTSAC	2 cut(s)	147, 178
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	2 cut(s)	147, 178
TspDTI	ATGAA	3 cut(s)	48, 377, 682
TspRI	CASTG	2 cut(s)	582, 640
VneI	GTGCAC	1 cut(s)	807
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	3 cut(s)	447, 505, 772
XceI	RCATGY	1 cut(s)	278
XspI	CTAG	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.