FvH4_6g28720

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001637
Physical Location & Seq
Reverse (-)
22155327 .. 22166842
11516 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28720.t12

Sequence Viewer

Length: 2853 bp
ATGTCATCCTCTAAGAAAGAGCTTGAGGAACAGCTTAAGAAGGCTGGACATTCTCTCCTTAAGCCTCCTTCCAACATTGATGAGCTCCTCAAACTCCTCGATGAAGTTGAGGGTTTGCTGTCATATGTGGAGCAAGCACCGTCTACATCCCTGCAAGATGCGCTTCTACCCTCAATGACAGCATTAATTTCGGATGTACTGTTACGACACTCAGATACGGATGTAAGAGTTTCTGTTGCATCATGTATCACTGAGATTACAAGAATAACAGCACCTGAAGCCCCATACGATGATGACAAAATGAAGGAAATTTTTAAGCTGATTGTAGCAGCTTTTGAAAACTTATCACATCTATCCGGTCGCTCTTACAAAAAGGCAGTGTCCACTCTAAAAGTTGTTGCGAAGGTCAGGTCAAGTGTGATGATGCTGGACCTTGACTGTTACTCATTAATTGCTGAGATGTTTCAACATTTCCTAAATATAATCCAGTCCAACCATCCACTTGCTGTGTTTTCAGACATGCAAACTATTATGACAATGGTTTTCGATGAAATTCATGAAAGTGAAGAAATTCCCTTGGAACTTCTCAAAATTCTCTTGTCAAGTGTTAGAAAGGAAAATCAGAATCTTTCACCTTTTTCTTGGAAATTGGGTGAGGCGGTTCTCCATAATTGTGCAGCTAAGCTCAAACCGTATCTCATGGAAGCAGTGAAGTCCATGGGTACTGCTTTGGACGATTATGCTCGTATAGTGGCTTCTATATGCCAGCATGGATCTGATACCCTCAAACTTGACCATGTCGTGAAGAATCAGGTGACAGAGGTAGTTACTGCCAATGCTGCTTGTCCGACATCAGTTGACAAATCTGTGGCTGCTCCCACTAGTGATGAACCTACAATTGTACATGACTCTTCTAAAACATTACAGCGTTGCCATCTTACTAAACATTCCAAGGAGGTTGATTTACAAGATGGTGCTCAACCTGAAAATTCATTCTCTGTGAAGGCTGTCAAATCAGTAACTGAGCCAGATTCCAGTACCAAAAAGAAAAGCACGAGGCCCCATTCTTCAATGGACGCAGAGGAAAAATCAGAAATTGAGCCACATTCAGCTCCGAAAAAGAGAGGCCGGAAGCCAAATTCTTTAATGAATCCAGAGGAAGGTTACGAGAATTGGATGCATTCTGGAAAAAAATCTCCAAAATCGGCTGGCAACAAGAAGTCACATGAAAAGGGATCTAATAGTTTACCTACTGAAGACCATGTTTGTGTGAAGGTCACTACGTCATCCCCTTTGCCATCAACACTTCAAGAAGTGGTTGAGCCATCCAGTTTTCCATTGACACTTCAAAAAACGACTGAGTCACCAAATTCTCAACCTAAAGCAGAAGGGGACATAGGATCTGCTTCTTCGCTTCTACAAAATGGCCATCCTGATGGAACCGAATCTAGAAGAGGTCGGCCAAAGAAGCAAGTAACCGTAGCACATCAAGAAGCTAATCCTACTTCCCTTGAACCGGCAAAGGGAGATTTTTTGAGTGCTCAGGCTGAAGAGAAAAGTCCACCATCAATCGATACTTTGAAAATGGAATCTAAGGAGACAAGTACCTTAAAAGCAAAATCACGAGGACGCCCCAGAAAATTTCGTCCAAAAACAAATGACGAGACAATTATTGCTTCTGTACATGTAGGCTCAGGGAAGGAATCTGCAGTTCCATATAATCCTGAGGAAAACCAACTAGAATCAGCTTTGACTCTTGGAACTGGGAATATCAATCACCAGTCATTGGTGCAAAAGGTTGGGACTGGGAATGTGAGTGCAACAAGACCAAGGGGGCGCCCGAGAAAGCTTGCTGCAAAATTAAATCAGGAGACTGTCCTTGCTTCTGAAAGTGTAGTAGTGAAAGAGGAGTCACCAGTCCCAAGTGGTCCCGAGCAAAAACCTGATCAGGAGCCCGCTTTACAGTCTGGAACTGGGAGTATCCAGGATCGATCAGCTGTAAAAGGTATTAAGAAACGTACGCTGGATGATGCTCCTAATGCAGATGGTGCTGAAGGATCTCTTAGTAAGAAGATATCCAAGTCTGAGACAAAAATGGAGGGAGATATTGTGGAAGGAACCCCTAAGATTATACGCAAGAGGAAACGTTCCATTGGAAAGGAAGAGGGGAATCCATTGCGTGATCCTGATGACCGATTAGTTGGCAAAGGAATAAAGGTTTGGTGGCCACAAGACAAAACGTTTTATGATGGTGTTGTTCGTTATTACGACGCTGTTAGAAAGAAACACTTGGTGCTTTATAATGATGGGGAGAAAGAAAACCTAAACCTTCGAAAGCAACGATGGCAACTGATTGGAGGTGATTCAGAAGATACATGTATACAACTGGGGCAAAAGAATGACACGCCAAAGACTGATGATTCTGATATACCACAAAAGAGGAAGTGGAAAGCAAAATCAGAGTCATCTAAGCAAGCAAATGCTGGTTTCTCCTTGAAGAGGTTGACGAATGATGAAACTGAAATATATGCTGGTGAGTTGAAGGTGGATATGAAGACTGGTATGGACTCTACGCAGATCACACCTGAGGCTATGACCTTGTCGAAGGAAGAGAATCCAAAAGTTGATATCGAAGCCTCTGTTAGTGTTGGTGCTAAAGAAATGACAGAATTGAAGACTGGTGTTGACTTTATGCAAATCACACCTGAGGCTATGACATTGTTGAAGGAAGAGAGTCCGAAAGTTGAAATCGAACCCTCTGTTGGTGTTGGTGCTAAAGAACTGACAGAATTGAGCAATGGTGCAAATGATGCAAGTTCCCCCTCTTCACCTGTGTTGGACAAGGCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEARLI-4

Protein Analysis

951

Amino Acids

103.98

Weight (kDa)

6.33

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDS5 PF20168 27 - 233 4.8e-46 Sister chromatid cohesion protein PDS5 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2301
AccB1I GGYRCC 1 cut(s) 1836
AccB7I CCANNNNNTGG 1 cut(s) 1786
AccI GTMKAC 2 cut(s) 143, 2380
AciI CCGC 2 cut(s) 659, 1956
AclI AACGTT 2 cut(s) 2146, 2240
AclWI GGATC 6 cut(s) 781, 1243, 1408, 1995, 2065, 2177
AcoI YGGCCR 3 cut(s) 1426, 1460, 2225
AcsI RAATTY 8 cut(s) 309, 552, 570, 591, 988, 1138, 1369, 1640
AcuI CTGAAG 4 cut(s) 297, 1275, 1569, 2073
AcyI GRCGYC 2 cut(s) 1630, 1837
AdeI CACNNNGTG 1 cut(s) 2293
AfaI GTAC 7 cut(s) 198, 724, 903, 1039, 1606, 1683, 2020
AfiI CCNNNNNNNGG 6 cut(s) 1160, 1516, 1523, 1786, 2499, 2762
AflII CTTAAG 2 cut(s) 35, 59
AflIII ACRYGT 2 cut(s) 1684, 2375
AhlI ACTAGT 1 cut(s) 881
AjnI CCWGG 1 cut(s) 1983
AjuI GAANNNNNNNTTGG 4 cut(s) 2203, 2235, 2745, 2777
Alw21I GWGCWC 3 cut(s) 87, 979, 1543
Alw26I GTCTC 4 cut(s) 1592, 1658, 1865, 2081
AlwI GGATC 6 cut(s) 781, 1243, 1408, 1995, 2065, 2177
AlwNI CAGNNNCTG 2 cut(s) 275, 1022
Ama87I CYCGRG 2 cut(s) 1840, 1931
AoxI GGCC 5 cut(s) 1058, 1126, 1426, 1460, 2225
ApeKI GCWGC 5 cut(s) 329, 677, 839, 872, 1853
ApoI RAATTY 8 cut(s) 309, 552, 570, 591, 988, 1138, 1369, 1640
ArsI GACNNNNNNTTYG 4 cut(s) 395, 427, 2447, 2479
AseI ATTAAT 2 cut(s) 185, 449
Asp700I GAANNNNTTC 1 cut(s) 570
AspLEI GCGC 2 cut(s) 163, 1839
AspS9I GGNCC 3 cut(s) 430, 1059, 1928
AsuHPI GGTGA 9 cut(s) 624, 665, 826, 1356, 1769, 1905, 2372, 2546, 2820
AsuII TTCGAA 1 cut(s) 2332
AvaI CYCGRG 2 cut(s) 1840, 1931
AvaII GGWCC 2 cut(s) 430, 1928
AxyI CCTNAGG 3 cut(s) 1725, 2586, 2706
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BalI TGGCCA 2 cut(s) 1428, 2227
BanI GGYRCC 1 cut(s) 1836
BanII GRGCYC 2 cut(s) 87, 1956
BarI GAAGNNNNNNTAC 2 cut(s) 739, 771
BauI CACGAG 2 cut(s) 1054, 1623
BbsI GAAGAC 3 cut(s) 1263, 2561, 2681
Bbv12I GWGCWC 3 cut(s) 87, 979, 1543
BbvI GCAGC 5 cut(s) 341, 689, 826, 859, 1840
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BciT130I CCWGG 1 cut(s) 1985
BciVI GTATCC 1 cut(s) 1991
BclI TGATCA 1 cut(s) 1945
BcoDI GTCTC 4 cut(s) 1592, 1658, 1865, 2081
BcuI ACTAGT 1 cut(s) 881
BfaI CTAG 3 cut(s) 882, 1449, 1739
BfmI CTRYAG 1 cut(s) 1707
BfoI RGCGCY 1 cut(s) 1840
BfrI CTTAAG 2 cut(s) 35, 59
BfuI GTATCC 1 cut(s) 1991
BisI GCNGC 5 cut(s) 330, 678, 840, 873, 1854
BlpI GCTNAGC 1 cut(s) 681
BlsI GCNGC 5 cut(s) 331, 679, 841, 874, 1855
Bme1390I CCNGG 1 cut(s) 1985
Bme18I GGWCC 2 cut(s) 430, 1928
BmeT110I CYCGRG 2 cut(s) 1840, 1931
BmgT120I GGNCC 3 cut(s) 430, 1059, 1928
BmiI GGNNCC 6 cut(s) 1061, 1441, 1838, 1930, 1953, 2119
BmrFI CCNGG 1 cut(s) 1985
BmrI ACTGGG 4 cut(s) 1773, 1815, 1983, 2396
BmsI GCATC 6 cut(s) 148, 248, 414, 1167, 2020, 2800
BmuI ACTGGG 4 cut(s) 1773, 1815, 1983, 2396
BpiI GAAGAC 3 cut(s) 1263, 2561, 2681
Bpu10I CCTNAGC 2 cut(s) 1542, 1693
Bpu1102I GCTNAGC 1 cut(s) 681
Bpu14I TTCGAA 1 cut(s) 2332
BpuEI CTTGAG 1 cut(s) 44
Bsa29I ATCGAT 2 cut(s) 1572, 1990
BsaHI GRCGYC 2 cut(s) 1630, 1837
BsaJI CCNNGG 4 cut(s) 576, 717, 951, 1829
BsaWI WCCGGW 1 cut(s) 356
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 2094, 2124
Bsc4I CCNNNNNNNGG 6 cut(s) 1160, 1516, 1523, 1786, 2499, 2762
Bse118I RCCGGY 1 cut(s) 1516
Bse21I CCTNAGG 3 cut(s) 1725, 2586, 2706
Bse3DI GCAATG 2 cut(s) 2174, 2803
BseBI CCWGG 1 cut(s) 1985
BseCI ATCGAT 2 cut(s) 1572, 1990
BseDI CCNNGG 4 cut(s) 576, 717, 951, 1829
BseLI CCNNNNNNNGG 6 cut(s) 1160, 1516, 1523, 1786, 2499, 2762
BseMI GCAATG 2 cut(s) 2174, 2803
BseRI GAGGAG 3 cut(s) 77, 86, 1922
BseXI GCAGC 5 cut(s) 341, 689, 826, 859, 1840
BsgI GTGCAG 1 cut(s) 696
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 5 cut(s) 1060, 1128, 1428, 1462, 2227
BshNI GGYRCC 1 cut(s) 1836
BshVI ATCGAT 2 cut(s) 1572, 1990
BsiEI CGRYCG 1 cut(s) 361
BsiHKAI GWGCWC 3 cut(s) 87, 979, 1543
BsiHKCI CYCGRG 2 cut(s) 1840, 1931
BsiSI CCGG 3 cut(s) 357, 1129, 1517
BsiWI CGTACG 1 cut(s) 2018
BslFI GGGAC 4 cut(s) 1406, 1816, 1904, 1914
BslI CCNNNNNNNGG 6 cut(s) 1160, 1516, 1523, 1786, 2499, 2762
BsmAI GTCTC 4 cut(s) 1592, 1658, 1865, 2081
BsmFI GGGAC 4 cut(s) 1406, 1816, 1904, 1914
BsmI GAATGC 1 cut(s) 1180
BsnI GGCC 5 cut(s) 1060, 1128, 1428, 1462, 2227
BsoBI CYCGRG 2 cut(s) 1840, 1931
Bsp119I TTCGAA 1 cut(s) 2332
Bsp1286I GDGCHC 4 cut(s) 87, 979, 1543, 1956
Bsp1407I TGTACA 2 cut(s) 901, 1681
Bsp143I GATC 9 cut(s) 773, 1235, 1400, 1945, 1987, 1991, 2057, 2182, 2577
Bsp1720I GCTNAGC 1 cut(s) 681
Bsp19I CCATGG 1 cut(s) 717
BspACI CCGC 2 cut(s) 659, 1956
BspANI GGCC 5 cut(s) 1060, 1128, 1428, 1462, 2227
BspDI ATCGAT 2 cut(s) 1572, 1990
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 6 cut(s) 1061, 1441, 1838, 1930, 1953, 2119
BspMAI CTGCAG 1 cut(s) 1711
BspPI GGATC 6 cut(s) 781, 1243, 1408, 1995, 2065, 2177
BspT104I TTCGAA 1 cut(s) 2332
BspT107I GGYRCC 1 cut(s) 1836
BspTI CTTAAG 2 cut(s) 35, 59
BsrDI GCAATG 2 cut(s) 2174, 2803
BsrFI RCCGGY 1 cut(s) 1516
BsrGI TGTACA 2 cut(s) 901, 1681
BssAI RCCGGY 1 cut(s) 1516
BssECI CCNNGG 4 cut(s) 576, 717, 951, 1829
BssMI GATC 9 cut(s) 773, 1235, 1400, 1945, 1987, 1991, 2057, 2182, 2577
BssNAI GTATAC 1 cut(s) 2381
BssNI GRCGYC 2 cut(s) 1630, 1837
BssSI CACGAG 2 cut(s) 1054, 1623
BssT1I CCWWGG 4 cut(s) 576, 717, 951, 1829
Bst1107I GTATAC 1 cut(s) 2381
Bst2BI CACGAG 2 cut(s) 1054, 1623
Bst2UI CCWGG 1 cut(s) 1985
Bst4CI ACNGT 7 cut(s) 141, 201, 440, 693, 1480, 1876, 1965
Bst6I CTCTTC 8 cut(s) 916, 1447, 1545, 2157, 2492, 2604, 2724, 2830
BstACI GRCGYC 2 cut(s) 1630, 1837
BstAFI CTTAAG 2 cut(s) 35, 59
BstAPI GCANNNNNTGC 2 cut(s) 2048, 2810
BstAUI TGTACA 2 cut(s) 901, 1681
BstBI TTCGAA 1 cut(s) 2332
BstC8I GCNNGC 6 cut(s) 135, 767, 1210, 1851, 1956, 2475
BstDSI CCRYGG 1 cut(s) 717
BstENI CCTNNNNNAGG 1 cut(s) 2497
BstH2I RGCGCY 1 cut(s) 1840
BstHHI GCGC 2 cut(s) 163, 1839
BstKTI GATC 9 cut(s) 776, 1238, 1403, 1948, 1990, 1994, 2060, 2185, 2580
BstMAI GTCTC 4 cut(s) 1592, 1658, 1865, 2081
BstMBI GATC 9 cut(s) 773, 1235, 1400, 1945, 1987, 1991, 2057, 2182, 2577
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 8 cut(s) 160, 278, 839, 1468, 2039, 2048, 2344, 2810
BstNI CCWGG 1 cut(s) 1985
BstNSI RCATGY 3 cut(s) 523, 1688, 2379
BstSCI CCNGG 1 cut(s) 1983
BstSFI CTRYAG 1 cut(s) 1707
BstV1I GCAGC 5 cut(s) 341, 689, 826, 859, 1840
BstV2I GAAGAC 3 cut(s) 1263, 2561, 2681
BstX2I RGATCY 4 cut(s) 773, 1235, 1400, 2057
BstXI CCANNNNNNTGG 1 cut(s) 1436
BstYI RGATCY 4 cut(s) 773, 1235, 1400, 2057
BstZ17I GTATAC 1 cut(s) 2381
Bsu15I ATCGAT 2 cut(s) 1572, 1990
Bsu36I CCTNAGG 3 cut(s) 1725, 2586, 2706
BsuI GTATCC 1 cut(s) 1991
BsuRI GGCC 5 cut(s) 1060, 1128, 1428, 1462, 2227
BsuTUI ATCGAT 2 cut(s) 1572, 1990
BtgI CCRYGG 1 cut(s) 717
BtsI GCAGTG 2 cut(s) 384, 714
BtsIMutI CAGTG 3 cut(s) 249, 384, 714
Cac8I GCNNGC 6 cut(s) 135, 767, 1210, 1851, 1956, 2475
CaiI CAGNNNCTG 2 cut(s) 275, 1022
CciI TCATGA 1 cut(s) 556
CfoI GCGC 2 cut(s) 163, 1839
Cfr10I RCCGGY 1 cut(s) 1516
Cfr13I GGNCC 3 cut(s) 430, 1059, 1928
ClaI ATCGAT 2 cut(s) 1572, 1990
CseI GACGC 3 cut(s) 1085, 1638, 2279
Csp6I GTAC 7 cut(s) 197, 723, 902, 1038, 1605, 1682, 2019
CviQI GTAC 7 cut(s) 197, 723, 902, 1038, 1605, 1682, 2019
DinI GGCGCC 1 cut(s) 1838
DpnI GATC 9 cut(s) 775, 1237, 1402, 1947, 1989, 1993, 2059, 2184, 2579
DpnII GATC 9 cut(s) 773, 1235, 1400, 1945, 1987, 1991, 2057, 2182, 2577
DraIII CACNNNGTG 1 cut(s) 2293
EaeI YGGCCR 3 cut(s) 1426, 1460, 2225
Eam1104I CTCTTC 8 cut(s) 916, 1447, 1545, 2157, 2492, 2604, 2724, 2830
EarI CTCTTC 8 cut(s) 916, 1447, 1545, 2157, 2492, 2604, 2724, 2830
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 4 cut(s) 576, 717, 951, 1829
Eco24I GRGCYC 2 cut(s) 87, 1956
Eco32I GATATC 2 cut(s) 2076, 2629
Eco47I GGWCC 2 cut(s) 430, 1928
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 4 cut(s) 297, 1275, 1569, 2073
Eco81I CCTNAGG 3 cut(s) 1725, 2586, 2706
Eco88I CYCGRG 2 cut(s) 1840, 1931
EcoICRI GAGCTC 1 cut(s) 85
EcoNI CCTNNNNNAGG 1 cut(s) 2497
EcoO109I RGGNCCY 1 cut(s) 1059
EcoRII CCWGG 1 cut(s) 1983
EcoRV GATATC 2 cut(s) 2076, 2629
EcoT14I CCWWGG 4 cut(s) 576, 717, 951, 1829
EcoT22I ATGCAT 1 cut(s) 1182
EcoT38I GRGCYC 2 cut(s) 87, 1956
EgeI GGCGCC 1 cut(s) 1838
EheI GGCGCC 1 cut(s) 1838
ErhI CCWWGG 4 cut(s) 576, 717, 951, 1829
FalI AAGNNNNNCTT 6 cut(s) 147, 179, 2046, 2078, 2273, 2305
FaqI GGGAC 4 cut(s) 1406, 1816, 1904, 1914
FauI CCCGC 1 cut(s) 1963
FauNDI CATATG 1 cut(s) 124
FbaI TGATCA 1 cut(s) 1945
FblI GTMKAC 2 cut(s) 143, 2380
Fnu4HI GCNGC 5 cut(s) 330, 678, 840, 873, 1854
FokI GGATG 9 cut(s) 133, 206, 233, 483, 1189, 1273, 1312, 1416, 2039
FriOI GRGCYC 2 cut(s) 87, 1956
Fsp4HI GCNGC 5 cut(s) 330, 678, 840, 873, 1854
FspBI CTAG 3 cut(s) 882, 1449, 1739
GlaI GCGC 2 cut(s) 162, 1838
GluI GCNGC 5 cut(s) 330, 678, 840, 873, 1854
HaeII RGCGCY 1 cut(s) 1840
HaeIII GGCC 5 cut(s) 1060, 1128, 1428, 1462, 2227
HapII CCGG 3 cut(s) 357, 1129, 1517
HgaI GACGC 3 cut(s) 1085, 1638, 2279
HhaI GCGC 2 cut(s) 163, 1839
Hin1I GRCGYC 2 cut(s) 1630, 1837
Hin6I GCGC 2 cut(s) 161, 1837
HinP1I GCGC 2 cut(s) 161, 1837
HincII GTYRAC 3 cut(s) 859, 2505, 2686
HindII GTYRAC 3 cut(s) 859, 2505, 2686
HindIII AAGCTT 1 cut(s) 1847
HpaII CCGG 3 cut(s) 357, 1129, 1517
HphI GGTGA 9 cut(s) 624, 665, 826, 1356, 1769, 1905, 2372, 2546, 2820
Hpy166II GTNNAC 8 cut(s) 144, 384, 859, 1247, 1562, 2381, 2505, 2686
Hpy8I GTNNAC 8 cut(s) 144, 384, 859, 1247, 1562, 2381, 2505, 2686
Hpy99I CGWCG 1 cut(s) 2273
HpyCH4III ACNGT 7 cut(s) 141, 201, 440, 693, 1480, 1876, 1965
HpyCH4IV ACGT 4 cut(s) 1283, 2017, 2146, 2240
HpyF10VI GCNNNNNNNGC 8 cut(s) 160, 278, 839, 1468, 2039, 2048, 2344, 2810
HpySE526I ACGT 4 cut(s) 1283, 2017, 2146, 2240
Hsp92I GRCGYC 2 cut(s) 1630, 1837
HspAI GCGC 2 cut(s) 161, 1837
KasI GGCGCC 1 cut(s) 1836
Ksp22I TGATCA 1 cut(s) 1945
Kzo9I GATC 9 cut(s) 773, 1235, 1400, 1945, 1987, 1991, 2057, 2182, 2577
LmnI GCTCC 6 cut(s) 90, 130, 880, 1117, 1951, 2038
Lsp1109I GCAGC 5 cut(s) 341, 689, 826, 859, 1840
LweI GCATC 6 cut(s) 148, 248, 414, 1167, 2020, 2800
MaeI CTAG 3 cut(s) 882, 1449, 1739
MaeII ACGT 4 cut(s) 1283, 2017, 2146, 2240
MalI GATC 9 cut(s) 775, 1237, 1402, 1947, 1989, 1993, 2059, 2184, 2579
MboI GATC 9 cut(s) 773, 1235, 1400, 1945, 1987, 1991, 2057, 2182, 2577
MfeI CAATTG 1 cut(s) 897
MflI RGATCY 4 cut(s) 773, 1235, 1400, 2057
MhlI GDGCHC 4 cut(s) 87, 979, 1543, 1956
MlsI TGGCCA 2 cut(s) 1428, 2227
MluNI TGGCCA 2 cut(s) 1428, 2227
Mly113I GGCGCC 1 cut(s) 1837
MlyI GAGTC 7 cut(s) 902, 1370, 1747, 1919, 2471, 2561, 2743
MmeI TCCRAC 4 cut(s) 96, 516, 872, 2817
Mox20I TGGCCA 2 cut(s) 1428, 2227
Mph1103I ATGCAT 1 cut(s) 1182
MroXI GAANNNNTTC 1 cut(s) 570
MscI TGGCCA 2 cut(s) 1428, 2227
MseI TTAA 9 cut(s) 36, 60, 185, 315, 449, 1145, 1610, 1862, 2010
MslI CAYNNNNRTG 4 cut(s) 561, 672, 1266, 1434
Msp20I TGGCCA 2 cut(s) 1428, 2227
MspA1I CMGCKG 1 cut(s) 1997
MspCI CTTAAG 2 cut(s) 35, 59
MspI CCGG 3 cut(s) 357, 1129, 1517
MspR9I CCNGG 1 cut(s) 1985
MunI CAATTG 1 cut(s) 897
Mva1269I GAATGC 1 cut(s) 1180
MvaI CCWGG 1 cut(s) 1985
MwoI GCNNNNNNNGC 8 cut(s) 160, 278, 839, 1468, 2039, 2048, 2344, 2810
NarI GGCGCC 1 cut(s) 1837
NcoI CCATGG 1 cut(s) 717
NdeI CATATG 1 cut(s) 124
NdeII GATC 9 cut(s) 773, 1235, 1400, 1945, 1987, 1991, 2057, 2182, 2577
NlaIV GGNNCC 6 cut(s) 1061, 1441, 1838, 1930, 1953, 2119
NmuCI GTSAC 5 cut(s) 814, 1221, 1276, 1362, 1911
NsiI ATGCAT 1 cut(s) 1182
NspI RCATGY 3 cut(s) 523, 1688, 2379
NspV TTCGAA 1 cut(s) 2332
PagI TCATGA 1 cut(s) 556
PciI ACATGT 2 cut(s) 1684, 2375
PcsI WCGNNNNNNNCGW 1 cut(s) 2338
PctI GAATGC 1 cut(s) 1180
PdmI GAANNNNTTC 1 cut(s) 570
Pfl23II CGTACG 1 cut(s) 2018
PflFI GACNNNGTC 3 cut(s) 797, 1360, 2599
PflMI CCANNNNNTGG 1 cut(s) 1786
PfoI TCCNGGA 1 cut(s) 1983
PkrI GCNGC 5 cut(s) 331, 679, 841, 874, 1855
PleI GAGTC 7 cut(s) 902, 1369, 1747, 1918, 2470, 2561, 2742
PluTI GGCGCC 1 cut(s) 1840
PpsI GAGTC 7 cut(s) 902, 1369, 1747, 1918, 2470, 2561, 2742
PscI ACATGT 2 cut(s) 1684, 2375
PshBI ATTAAT 2 cut(s) 185, 449
PsiI TTATAA 1 cut(s) 2301
Psp124BI GAGCTC 1 cut(s) 87
Psp1406I AACGTT 2 cut(s) 2146, 2240
Psp6I CCWGG 1 cut(s) 1983
PspGI CCWGG 1 cut(s) 1983
PspLI CGTACG 1 cut(s) 2018
PspN4I GGNNCC 6 cut(s) 1061, 1441, 1838, 1930, 1953, 2119
PspPI GGNCC 3 cut(s) 430, 1059, 1928
PstI CTGCAG 1 cut(s) 1711
PstNI CAGNNNCTG 2 cut(s) 275, 1022
PsuI RGATCY 4 cut(s) 773, 1235, 1400, 2057
PsyI GACNNNGTC 3 cut(s) 797, 1360, 2599
PvuII CAGCTG 1 cut(s) 1997
RsaI GTAC 7 cut(s) 198, 724, 903, 1039, 1606, 1683, 2020
RsaNI GTAC 7 cut(s) 197, 723, 902, 1038, 1605, 1682, 2019
RseI CAYNNNNRTG 4 cut(s) 561, 672, 1266, 1434
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 9 cut(s) 36, 60, 185, 315, 449, 1145, 1610, 1862, 2010
SatI GCNGC 5 cut(s) 330, 678, 840, 873, 1854
Sau3AI GATC 9 cut(s) 773, 1235, 1400, 1945, 1987, 1991, 2057, 2182, 2577
Sau96I GGNCC 3 cut(s) 430, 1059, 1928
SchI GAGTC 7 cut(s) 902, 1370, 1747, 1919, 2471, 2561, 2743
ScrFI CCNGG 1 cut(s) 1985
SduI GDGCHC 4 cut(s) 87, 979, 1543, 1956
SfaNI GCATC 6 cut(s) 148, 248, 414, 1167, 2020, 2800
SfcI CTRYAG 1 cut(s) 1707
SfoI GGCGCC 1 cut(s) 1838
SfuI TTCGAA 1 cut(s) 2332
SinI GGWCC 2 cut(s) 430, 1928
SmiMI CAYNNNNRTG 4 cut(s) 561, 672, 1266, 1434
SmlI CTYRAG 3 cut(s) 23, 35, 59
SmoI CTYRAG 3 cut(s) 23, 35, 59
SpeI ACTAGT 1 cut(s) 881
SsiI CCGC 2 cut(s) 659, 1956
SspDI GGCGCC 1 cut(s) 1836
SspMI CTAG 3 cut(s) 882, 1449, 1739
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 1983
StyI CCWWGG 4 cut(s) 576, 717, 951, 1829
TaaI ACNGT 7 cut(s) 141, 201, 440, 693, 1480, 1876, 1965
TaiI ACGT 4 cut(s) 1286, 2020, 2149, 2243
TaqI TCGA 8 cut(s) 99, 546, 1572, 1990, 2332, 2603, 2631, 2751
TaqII GACCGA 1 cut(s) 2208
TatI WGTACW 3 cut(s) 196, 901, 1681
Tru1I TTAA 9 cut(s) 36, 60, 185, 315, 449, 1145, 1610, 1862, 2010
Tru9I TTAA 9 cut(s) 36, 60, 185, 315, 449, 1145, 1610, 1862, 2010
TscAI CASTG 3 cut(s) 256, 384, 714
TseFI GTSAC 5 cut(s) 814, 1221, 1276, 1362, 1911
TseI GCWGC 5 cut(s) 329, 677, 839, 872, 1853
Tsp45I GTSAC 5 cut(s) 814, 1221, 1276, 1362, 1911
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 3 cut(s) 256, 384, 714
Tth111I GACNNNGTC 3 cut(s) 797, 1360, 2599
Van91I CCANNNNNTGG 1 cut(s) 1786
Vha464I CTTAAG 2 cut(s) 35, 59
VpaK11BI GGWCC 2 cut(s) 430, 1928
VspI ATTAAT 2 cut(s) 185, 449
XagI CCTNNNNNAGG 1 cut(s) 2497
XapI RAATTY 8 cut(s) 309, 552, 570, 591, 988, 1138, 1369, 1640
XbaI TCTAGA 1 cut(s) 1448
XceI RCATGY 3 cut(s) 523, 1688, 2379
XmiI GTMKAC 2 cut(s) 143, 2380
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 3 cut(s) 882, 1449, 1739
Zsp2I ATGCAT 1 cut(s) 1182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.