Rroxscaffold_2G00111400

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001637
Physical Location & Seq
Forward (+)
36008989 .. 36020436
11448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111400.1

Sequence Viewer

Length: 2910 bp
ATGTCGTCCTCTAAGAAAGAGCTTGAGGAGCAGCTTAAGCAGGCTGGACATTCTCTCCTTAAGCCTCCTTCCAACACTGATGAGCTCCTCAAACTTCTTGATGAAGTTGAGGATTTGTTGTCAGATGTGGGGCAAGCACCATCTACATCCCTGCAAGATGCGCTTCTACCCACAATGACAGCATTAATCTCTACAGAACTGTTACGACACAGTGATATGGATGTGAAAGTTTCTGTTGCAGCATGTATCACTGAGATTACTAGAATAACAGCACCGGAAGCCCCATACAACGATGAACAAATGAAGGAAATTTTTAAGCTGACTGTAGCAGCTTTTGAAAACTTGGCACATCTATCCAGTCGCTCTTACAAAAAGGCAGCTTCCATTCTAAGAGTTGTTGCGAAGGTCAGGTCAAGTGTGATGATGCTGGACCTTGACTGTTACACATTAATTGCTGAGATGTTTCAACATTTCCTAAATATAATCCAGTCCAACCATCCAAATGCTGTATTTTCAGACATGCAAACTATTATGACAATGGTTTTAGATGAAATTCATGAAAGTGAAGAAATTCCCTTGGAACTTCTCAAAATTCTTTTATCAAGCGTTAGAAAGGAAAATCAGAATGTTTCACCTTTTTCTTGGAAATTGGGGGAGACAGTGCTCGATAATTGTTCTGCTAAGGTTAAACCGTATCTCATGGAGGCAGTGAAGTCCATGGGTACTGCTGTGGACGATTATGCTCATATAGTGGCTTCTATATGCCAAAATGGATCTGGTGCTCTCAAACTTGATCATGTCAATGATTCTGCGAAGAATCTGGTGACAGAGGTAGTCACTGCTGATGCTGCTTGTCCGACAGCAGTTGACAAATCTGTGCCTGCTTCCGCTCGTGATGAACATAAAGTTTTACGTGACTCTTCTAAAACATTACTGCGTTGTCATCTTACTAAACATTCCAAGGAGGTTGATTCACAAGATGGTGCTCAACCCGACAAAACATTCTCTGTGAAGGCTGTCAAATCAGTAACTGAGCCAGATTCGGAGGAAGGCTATGAGAATTATTGGATGCATTCTGGAAAAAAATCTCCAAAATCAGCTGGGAACAGGAAGTCCCATGAAAAGGGATCTAATAGTTTACCTACTGAAGACCATCTTCGTTTGAAGGTCACTTTGTCATCCACTTTGCCATCGTCACTTAAAGAAGTGACTCGGCCATCCACTTTGCCATCTACACATCAAAAAGTGACTGAGCCACCAAATGCTCAACCTAAAACAGAAGGGGAGATAGGATCTGCATCTTCGTTTCTACAAAATGGCCATCCTGAGGGAACCGAATCCAGAAGGGGTCGGCCAAAGAAGCAAGTAGCCATAGCACAACAAGAAGCTAATCCTACTTCCCTTTCAGCTGCAAAGGGAGATTTTCCGAATGCTCAGGCTGAAGAGAAAAGTCCACGATCAATGGATACCTTGAATATGGAATCTAAGGAGACGAGTAGCTTAAAAGCAAAATCACGGGGACGCCCTAGAAAATTTCGTGCCAAAACAAATGACGAGACCATTATTGCTTCTGTACATGTTGGCACAGAGAAGGAATCTGCAGTTTCATGTGATCCGGAGGAAAAACAACAAGAGTCAGCTTTGACTCTTGGAACTGGGAATATCAATGATCAATCAGCTGTGCAAAAGGTTGGGACTGGGAATTCACCAGTCCCATGTGATCCTGAGCAAAAACAGCAGCAAGAGCCAGCTCTACAGTATGAAACTGGGAGTATTAAGGATCAATCAGCTATAAAGGGTATCAAGAAACGTAAGCGGGATGATGCTCCTAGTAAAGGTAGTGCTGAAGGATCTCTTAGCAAGAAGTTTTCCAAGTGTGAGGCAAAATTGGAGGGAGATAAAAATGTTGTTGAAGGAACCCCTAAGATTGTACGCAAGAGGAAGCGTTCCATTGGAAAGGAAGAGGCTAATCCAATGCCCGATCCTGATGACCGCTTAGTTGGCAAAGGAATAAAGGTTTGGTGGCCTCACGACAAAACGTTTTATGATGGTGTTGTTCGTTCCTACGACGCTGTTAAAAAGAAGCACTTGGTGCTTTATAATGATGGGGAGAAAGAAAACCTGAACCTTCGAAAGCAACGGTGGCAACTGCTTGGAGATGATTCAAAAGATCCATGTATACAACTGGGACAAAAGAGCGATACACCAAAGACTGATGCTTCTGACATACCACAAAAGAGGAAGCGGAAAGCAAAATCAGAGTCATCTAAGCAAGCAAATGCTGGTTTCTCTTTGAAAAGGATATCTAGAACTGGAGCCTCAGCTGGCTTATCCACTGTTGAGTGTATGAAGTCTGACAGTAAATCTGCAGACCGTTCTACAGTTAGTGAGCCTATTAAAGATGAAACACGGGATGACAAGTCCAAGGAAATTGACAGGTTGACGGATGATGAAGGTGAAATATATGCTGGCAAGTTGAAGGCAGATATGAAGACTGGTATTGACTCTACGCAGATCACACCTGAGGCTATGACCTTGTCTAAGGAAGAGAGTGCAAAAGTTGATATTGAACCCTCTGTTAGTGATGGTGCTAAAGAAATGAAAGAATTGAGCGATGGTGCAAAGGATGCAAGTTCCTCCCCTTTACCTGTGTTGGACAAGGCTGTGTTGAGATGGCTGGGTTCAAATGGTACTGTACTGTGTTCGCTGCTCTCAAGTAGGACAACAGATAATTGGCGTCATGAAGTGAGGACGGTCTGTAGCTTGGTTGTCTTTGTCAATTCCATACTACCAGATGTGTGGTATCTTTTGGGTAGAAGGTTCCATAGCAATACTGCAGAGATCTTCCTGTGCATCTACATCTCTTTGCATTTTTATGTACCCTTCTCCACCCCATTCTGGCCCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEARLI-4

Protein Analysis

969

Amino Acids

106.65

Weight (kDa)

6.91

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDS5 PF20168 27 - 233 2.8e-48 Sister chromatid cohesion protein PDS5 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2100
AccBSI CCGCTC 1 cut(s) 890
AccI GTMKAC 1 cut(s) 2179
AccIII TCCGGA 1 cut(s) 1615
AciI CCGC 4 cut(s) 888, 1816, 1993, 2245
AclI AACGTT 1 cut(s) 2039
AclWI GGATC 9 cut(s) 781, 1135, 1300, 1607, 1715, 1788, 1858, 1976, 2165
AcoI YGGCCR 3 cut(s) 1214, 1318, 1352
AcsI RAATTY 6 cut(s) 309, 552, 570, 591, 1532, 1702
AcuI CTGAAG 3 cut(s) 1167, 1461, 1866
AcyI GRCGYC 2 cut(s) 1522, 2737
AdeI CACNNNGTG 1 cut(s) 2092
AfaI GTAC 6 cut(s) 724, 1575, 1932, 2692, 2697, 2880
AfiI CCNNNNNNNGG 4 cut(s) 1123, 1327, 1835, 2898
AflII CTTAAG 2 cut(s) 35, 59
AflIII ACRYGT 1 cut(s) 1576
AjuI GAANNNNNNNTTGG 2 cut(s) 2002, 2034
AloI GAACNNNNNNTCC 2 cut(s) 1097, 1129
Alw21I GWGCWC 4 cut(s) 87, 666, 784, 988
Alw26I GTCTC 3 cut(s) 650, 1484, 1550
AlwI GGATC 9 cut(s) 781, 1135, 1300, 1607, 1715, 1788, 1858, 1976, 2165
AlwNI CAGNNNCTG 1 cut(s) 1031
Aor13HI TCCGGA 1 cut(s) 1615
AoxI GGCC 5 cut(s) 1214, 1318, 1352, 2024, 2900
ApeKI GCWGC 8 cut(s) 31, 239, 329, 377, 848, 1409, 1738, 2707
ApoI RAATTY 6 cut(s) 309, 552, 570, 591, 1532, 1702
ArsI GACNNNNNNTTYG 4 cut(s) 395, 427, 2246, 2278
AseI ATTAAT 2 cut(s) 185, 449
Asp700I GAANNNNTTC 1 cut(s) 570
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 2 cut(s) 430, 2901
AsuHPI GGTGA 4 cut(s) 624, 835, 1698, 2468
AsuII TTCGAA 1 cut(s) 2131
AvaII GGWCC 1 cut(s) 430
AxyI CCTNAGG 2 cut(s) 1326, 2523
BaeI ACNNNNGTAYC 2 cut(s) 714, 747
BalI TGGCCA 1 cut(s) 1320
BanII GRGCYC 1 cut(s) 87
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 2 cut(s) 1155, 2498
Bbv12I GWGCWC 4 cut(s) 87, 666, 784, 988
BbvCI CCTCAGC 1 cut(s) 2320
BbvI GCAGC 8 cut(s) 43, 251, 341, 389, 835, 1396, 1750, 2694
BciVI GTATCC 1 cut(s) 1459
BclI TGATCA 2 cut(s) 793, 1669
BcoDI GTCTC 3 cut(s) 650, 1484, 1550
BfaI CTAG 4 cut(s) 261, 1527, 1830, 2307
BfmI CTRYAG 8 cut(s) 192, 324, 1599, 1754, 2367, 2379, 2758, 2835
BfrI CTTAAG 2 cut(s) 35, 59
BfuI GTATCC 1 cut(s) 1459
BglII AGATCT 1 cut(s) 2841
BisI GCNGC 8 cut(s) 32, 240, 330, 378, 849, 1410, 1739, 2708
BlsI GCNGC 8 cut(s) 33, 241, 331, 379, 850, 1411, 1740, 2709
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 430, 2901
BmiI GGNNCC 4 cut(s) 1333, 1918, 2317, 2822
BmrI ACTGGG 4 cut(s) 1665, 1707, 1776, 2195
BmsI GCATC 9 cut(s) 148, 414, 835, 1059, 1307, 1813, 2206, 2617, 2862
BmuI ACTGGG 4 cut(s) 1665, 1707, 1776, 2195
BpiI GAAGAC 2 cut(s) 1155, 2498
BpmI CTGGAG 1 cut(s) 2334
Bpu10I CCTNAGC 4 cut(s) 681, 1434, 1725, 2320
Bpu14I TTCGAA 1 cut(s) 2131
BpuEI CTTGAG 2 cut(s) 44, 2698
BsaAI YACGTR 1 cut(s) 914
BsaBI GATNNNNATC 1 cut(s) 1297
BsaHI GRCGYC 2 cut(s) 1522, 2737
BsaI GGTCTC 1 cut(s) 1550
BsaJI CCNNGG 4 cut(s) 576, 717, 960, 2424
BsaWI WCCGGW 2 cut(s) 274, 1615
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 4 cut(s) 1123, 1327, 1835, 2898
Bse1I ACTGG 9 cut(s) 357, 487, 1660, 1702, 1709, 1771, 2190, 2317, 2500
Bse21I CCTNAGG 2 cut(s) 1326, 2523
Bse8I GATNNNNATC 1 cut(s) 1297
BseAI TCCGGA 1 cut(s) 1615
BseDI CCNNGG 4 cut(s) 576, 717, 960, 2424
BseJI GATNNNNATC 1 cut(s) 1297
BseLI CCNNNNNNNGG 4 cut(s) 1123, 1327, 1835, 2898
BseMII CTCAG 9 cut(s) 243, 447, 1023, 1242, 1317, 1448, 1716, 2334, 2514
BseNI ACTGG 9 cut(s) 357, 487, 1660, 1702, 1709, 1771, 2190, 2317, 2500
BseRI GAGGAG 2 cut(s) 41, 77
BseXI GCAGC 8 cut(s) 43, 251, 341, 389, 835, 1396, 1750, 2694
BseYI CCCAGC 2 cut(s) 1100, 2677
BshFI GGCC 5 cut(s) 1216, 1320, 1354, 2026, 2902
BsiHKAI GWGCWC 4 cut(s) 87, 666, 784, 988
BsiSI CCGG 2 cut(s) 275, 1616
BslFI GGGAC 5 cut(s) 1099, 1533, 1697, 1708, 2202
BslI CCNNNNNNNGG 4 cut(s) 1123, 1327, 1835, 2898
BsmAI GTCTC 3 cut(s) 650, 1484, 1550
BsmBI CGTCTC 1 cut(s) 1484
BsmFI GGGAC 5 cut(s) 1099, 1533, 1697, 1708, 2202
BsmI GAATGC 2 cut(s) 1072, 1435
BsnI GGCC 5 cut(s) 1216, 1320, 1354, 2026, 2902
Bso31I GGTCTC 1 cut(s) 1550
Bsp119I TTCGAA 1 cut(s) 2131
Bsp1286I GDGCHC 4 cut(s) 87, 666, 784, 988
Bsp13I TCCGGA 1 cut(s) 1615
Bsp1407I TGTACA 1 cut(s) 1573
Bsp19I CCATGG 1 cut(s) 717
BspACI CCGC 4 cut(s) 888, 1816, 1993, 2245
BspANI GGCC 5 cut(s) 1216, 1320, 1354, 2026, 2902
BspCNI CTCAG 9 cut(s) 244, 448, 1024, 1243, 1318, 1447, 1717, 2333, 2515
BspEI TCCGGA 1 cut(s) 1615
BspHI TCATGA 3 cut(s) 556, 2740, 2906
BspLI GGNNCC 4 cut(s) 1333, 1918, 2317, 2822
BspMAI CTGCAG 3 cut(s) 1603, 2371, 2839
BspPI GGATC 9 cut(s) 781, 1135, 1300, 1607, 1715, 1788, 1858, 1976, 2165
BspT104I TTCGAA 1 cut(s) 2131
BspTI CTTAAG 2 cut(s) 35, 59
BspTNI GGTCTC 1 cut(s) 1550
BsrBI CCGCTC 1 cut(s) 890
BsrGI TGTACA 1 cut(s) 1573
BsrI ACTGG 9 cut(s) 357, 487, 1660, 1702, 1709, 1771, 2190, 2317, 2500
BssECI CCNNGG 4 cut(s) 576, 717, 960, 2424
BssNAI GTATAC 1 cut(s) 2180
BssNI GRCGYC 2 cut(s) 1522, 2737
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 4 cut(s) 576, 717, 960, 2424
Bst1107I GTATAC 1 cut(s) 2180
Bst2BI CACGAG 1 cut(s) 891
Bst6I CTCTTC 4 cut(s) 925, 1437, 1956, 2541
BstACI GRCGYC 2 cut(s) 1522, 2737
BstAFI CTTAAG 2 cut(s) 35, 59
BstAPI GCANNNNNTGC 2 cut(s) 2092, 2627
BstAUI TGTACA 1 cut(s) 1573
BstBAI YACGTR 1 cut(s) 914
BstBI TTCGAA 1 cut(s) 2131
BstC8I GCNNGC 7 cut(s) 42, 135, 882, 1749, 2274, 2326, 2470
BstDSI CCRYGG 1 cut(s) 717
BstENI CCTNNNNNAGG 1 cut(s) 1833
BstHHI GCGC 1 cut(s) 163
BstMAI GTCTC 3 cut(s) 650, 1484, 1550
BstNSI RCATGY 3 cut(s) 246, 523, 1580
BstSFI CTRYAG 8 cut(s) 192, 324, 1599, 1754, 2367, 2379, 2758, 2835
BstV1I GCAGC 8 cut(s) 43, 251, 341, 389, 835, 1396, 1750, 2694
BstV2I GAAGAC 2 cut(s) 1155, 2498
BstX2I RGATCY 6 cut(s) 773, 1127, 1292, 1850, 2170, 2841
BstXI CCANNNNNNTGG 1 cut(s) 2799
BstYI RGATCY 6 cut(s) 773, 1127, 1292, 1850, 2170, 2841
BstZ17I GTATAC 1 cut(s) 2180
Bsu36I CCTNAGG 2 cut(s) 1326, 2523
BsuI GTATCC 1 cut(s) 1459
BsuRI GGCC 5 cut(s) 1216, 1320, 1354, 2026, 2902
BtgI CCRYGG 1 cut(s) 717
BtgZI GCGATG 1 cut(s) 2628
BtsI GCAGTG 2 cut(s) 714, 837
BtsIMutI CAGTG 7 cut(s) 75, 217, 249, 666, 714, 837, 2334
Cac8I GCNNGC 7 cut(s) 42, 135, 882, 1749, 2274, 2326, 2470
CaiI CAGNNNCTG 1 cut(s) 1031
CciI TCATGA 3 cut(s) 556, 2740, 2906
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 430, 2901
CseI GACGC 3 cut(s) 1530, 2078, 2726
Csp6I GTAC 6 cut(s) 723, 1574, 1931, 2691, 2696, 2879
CviQI GTAC 6 cut(s) 723, 1574, 1931, 2691, 2696, 2879
DraIII CACNNNGTG 1 cut(s) 2092
EaeI YGGCCR 3 cut(s) 1214, 1318, 1352
Eam1104I CTCTTC 4 cut(s) 925, 1437, 1956, 2541
EarI CTCTTC 4 cut(s) 925, 1437, 1956, 2541
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 4 cut(s) 576, 717, 960, 2424
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 1550
Eco32I GATATC 1 cut(s) 2304
Eco47I GGWCC 1 cut(s) 430
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 3 cut(s) 1167, 1461, 1866
Eco81I CCTNAGG 2 cut(s) 1326, 2523
EcoICRI GAGCTC 1 cut(s) 85
EcoNI CCTNNNNNAGG 1 cut(s) 1833
EcoRI GAATTC 1 cut(s) 1702
EcoRV GATATC 1 cut(s) 2304
EcoT14I CCWWGG 4 cut(s) 576, 717, 960, 2424
EcoT22I ATGCAT 1 cut(s) 1074
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 4 cut(s) 576, 717, 960, 2424
Esp3I CGTCTC 1 cut(s) 1484
FalI AAGNNNNNCTT 8 cut(s) 147, 179, 1140, 1172, 1839, 1871, 2072, 2104
FaqI GGGAC 5 cut(s) 1099, 1533, 1697, 1708, 2202
FauI CCCGC 1 cut(s) 1809
FbaI TGATCA 2 cut(s) 793, 1669
FblI GTMKAC 1 cut(s) 2179
Fnu4HI GCNGC 8 cut(s) 32, 240, 330, 378, 849, 1410, 1739, 2708
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 8 cut(s) 32, 240, 330, 378, 849, 1410, 1739, 2708
FspBI CTAG 4 cut(s) 261, 1527, 1830, 2307
GlaI GCGC 1 cut(s) 162
GluI GCNGC 8 cut(s) 32, 240, 330, 378, 849, 1410, 1739, 2708
GsaI CCCAGC 2 cut(s) 1104, 2681
GsuI CTGGAG 1 cut(s) 2334
HaeIII GGCC 5 cut(s) 1216, 1320, 1354, 2026, 2902
HapII CCGG 2 cut(s) 275, 1616
HgaI GACGC 3 cut(s) 1530, 2078, 2726
HhaI GCGC 1 cut(s) 163
Hin1I GRCGYC 2 cut(s) 1522, 2737
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HincII GTYRAC 2 cut(s) 868, 2442
HindII GTYRAC 2 cut(s) 868, 2442
HpaII CCGG 2 cut(s) 275, 1616
HphI GGTGA 4 cut(s) 624, 835, 1698, 2468
Hpy166II GTNNAC 6 cut(s) 733, 868, 1139, 1454, 2180, 2442
Hpy188I TCNGA 9 cut(s) 124, 517, 624, 858, 1045, 1428, 2224, 2260, 2356
Hpy8I GTNNAC 6 cut(s) 733, 868, 1139, 1454, 2180, 2442
Hpy99I CGWCG 1 cut(s) 2072
HpyCH4IV ACGT 3 cut(s) 913, 1810, 2039
HpySE526I ACGT 3 cut(s) 913, 1810, 2039
Hsp92I GRCGYC 2 cut(s) 1522, 2737
HspAI GCGC 1 cut(s) 161
Kpn2I TCCGGA 1 cut(s) 1615
Ksp22I TGATCA 2 cut(s) 793, 1669
LmnI GCTCC 4 cut(s) 28, 90, 1831, 2315
Lsp1109I GCAGC 8 cut(s) 43, 251, 341, 389, 835, 1396, 1750, 2694
LweI GCATC 9 cut(s) 148, 414, 835, 1059, 1307, 1813, 2206, 2617, 2862
MaeI CTAG 4 cut(s) 261, 1527, 1830, 2307
MaeII ACGT 3 cut(s) 913, 1810, 2039
MbiI CCGCTC 1 cut(s) 890
MflI RGATCY 6 cut(s) 773, 1127, 1292, 1850, 2170, 2841
MhlI GDGCHC 4 cut(s) 87, 666, 784, 988
MlsI TGGCCA 1 cut(s) 1320
MluNI TGGCCA 1 cut(s) 1320
MlyI GAGTC 6 cut(s) 911, 1204, 1639, 1643, 2270, 2498
MmeI TCCRAC 4 cut(s) 96, 516, 881, 2634
Mox20I TGGCCA 1 cut(s) 1320
Mph1103I ATGCAT 1 cut(s) 1074
MroI TCCGGA 1 cut(s) 1615
MroXI GAANNNNTTC 1 cut(s) 570
MscI TGGCCA 1 cut(s) 1320
MslI CAYNNNNRTG 4 cut(s) 501, 561, 801, 2874
Msp20I TGGCCA 1 cut(s) 1320
MspA1I CMGCKG 4 cut(s) 1100, 1409, 1679, 2324
MspCI CTTAAG 2 cut(s) 35, 59
MspI CCGG 2 cut(s) 275, 1616
Mva1269I GAATGC 2 cut(s) 1072, 1435
NcoI CCATGG 1 cut(s) 717
NlaIV GGNNCC 4 cut(s) 1333, 1918, 2317, 2822
NmeAIII GCCGAG 1 cut(s) 1192
NmuCI GTSAC 7 cut(s) 823, 835, 914, 1168, 1194, 1207, 1246
NsiI ATGCAT 1 cut(s) 1074
NspI RCATGY 3 cut(s) 246, 523, 1580
NspV TTCGAA 1 cut(s) 2131
PagI TCATGA 3 cut(s) 556, 2740, 2906
PciI ACATGT 1 cut(s) 1576
PctI GAATGC 2 cut(s) 1072, 1435
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 8 cut(s) 806, 817, 971, 1040, 1337, 1481, 1595, 2162
PflFI GACNNNGTC 1 cut(s) 2536
PkrI GCNGC 8 cut(s) 33, 241, 331, 379, 850, 1411, 1740, 2709
PleI GAGTC 6 cut(s) 911, 1204, 1639, 1642, 2269, 2498
PpsI GAGTC 6 cut(s) 911, 1204, 1639, 1642, 2269, 2498
Ppu21I YACGTR 1 cut(s) 914
PscI ACATGT 1 cut(s) 1576
PshBI ATTAAT 2 cut(s) 185, 449
PsiI TTATAA 1 cut(s) 2100
Psp124BI GAGCTC 1 cut(s) 87
Psp1406I AACGTT 1 cut(s) 2039
PspFI CCCAGC 2 cut(s) 1100, 2677
PspN4I GGNNCC 4 cut(s) 1333, 1918, 2317, 2822
PspPI GGNCC 2 cut(s) 430, 2901
PstI CTGCAG 3 cut(s) 1603, 2371, 2839
PstNI CAGNNNCTG 1 cut(s) 1031
PsuI RGATCY 6 cut(s) 773, 1127, 1292, 1850, 2170, 2841
PsyI GACNNNGTC 1 cut(s) 2536
PvuII CAGCTG 4 cut(s) 1100, 1409, 1679, 2324
RsaI GTAC 6 cut(s) 724, 1575, 1932, 2692, 2697, 2880
RsaNI GTAC 6 cut(s) 723, 1574, 1931, 2691, 2696, 2879
RseI CAYNNNNRTG 4 cut(s) 501, 561, 801, 2874
SacI GAGCTC 1 cut(s) 87
SatI GCNGC 8 cut(s) 32, 240, 330, 378, 849, 1410, 1739, 2708
Sau96I GGNCC 2 cut(s) 430, 2901
SchI GAGTC 6 cut(s) 911, 1204, 1639, 1643, 2270, 2498
SduI GDGCHC 4 cut(s) 87, 666, 784, 988
SfaNI GCATC 9 cut(s) 148, 414, 835, 1059, 1307, 1813, 2206, 2617, 2862
SfcI CTRYAG 8 cut(s) 192, 324, 1599, 1754, 2367, 2379, 2758, 2835
SfuI TTCGAA 1 cut(s) 2131
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 4 cut(s) 501, 561, 801, 2874
SmlI CTYRAG 4 cut(s) 23, 35, 59, 2713
SmoI CTYRAG 4 cut(s) 23, 35, 59, 2713
SsiI CCGC 4 cut(s) 888, 1816, 1993, 2245
SspMI CTAG 4 cut(s) 261, 1527, 1830, 2307
SstI GAGCTC 1 cut(s) 87
StyI CCWWGG 4 cut(s) 576, 717, 960, 2424
TaiI ACGT 3 cut(s) 916, 1813, 2042
TaqI TCGA 2 cut(s) 666, 2131
TatI WGTACW 2 cut(s) 1573, 2695
TfiI GAWTC 8 cut(s) 806, 817, 971, 1040, 1337, 1481, 1595, 2162
TscAI CASTG 7 cut(s) 82, 217, 256, 666, 714, 844, 2341
TseFI GTSAC 7 cut(s) 823, 835, 914, 1168, 1194, 1207, 1246
TseI GCWGC 8 cut(s) 31, 239, 329, 377, 848, 1409, 1738, 2707
Tsp45I GTSAC 7 cut(s) 823, 835, 914, 1168, 1194, 1207, 1246
TspGWI ACGGA 1 cut(s) 2459
TspRI CASTG 7 cut(s) 82, 217, 256, 666, 714, 844, 2341
Tth111I GACNNNGTC 1 cut(s) 2536
Vha464I CTTAAG 2 cut(s) 35, 59
VpaK11BI GGWCC 1 cut(s) 430
VspI ATTAAT 2 cut(s) 185, 449
XagI CCTNNNNNAGG 1 cut(s) 1833
XapI RAATTY 6 cut(s) 309, 552, 570, 591, 1532, 1702
XbaI TCTAGA 1 cut(s) 2306
XceI RCATGY 3 cut(s) 246, 523, 1580
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XmiI GTMKAC 1 cut(s) 2179
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 4 cut(s) 261, 1527, 1830, 2307
Zsp2I ATGCAT 1 cut(s) 1074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.