pycom06g06660

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001637
Physical Location & Seq
Reverse (-)
10641568 .. 10641960
393 bp
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UTR
Exon/CDS
Intron
pycom06g06660.1

Sequence Viewer

Length: 282 bp
ATGGAGGCATTAATTTCTGATGAGCTGTTTAGGTACTCAGATATGCATGTGAAGCTATATGTTGCTTCTTGCATTACTGAGCTTACGAGAATAACAGCATCGGTTCCTCCATACAACGATGAATGGATGAAGGACTTTATTTCTCATTTATTGGTTGAACTAGAAATCTTTCAGCTGACTGTAGCGGCTTTTGAGAAACCTTCATGTACTTCCAGTCCCTTTTTTATAGAAAGGCAGTTTCCATTCTTCATATTGTTGCAAAGGTTAGGTCAAGCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEARLI-4

Protein Analysis

94

Amino Acids

10.83

Weight (kDa)

4.8

Isoelectric Point (pI)

63.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDS5 PF20168 3 - 47 2.7e-08 Sister chromatid cohesion protein PDS5 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 185
AfaI GTAC 2 cut(s) 35, 208
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 5 cut(s) 25, 55, 82, 175, 275
AluI AGCT 5 cut(s) 25, 55, 82, 175, 275
ArsI GACNNNNNNTTYG 1 cut(s) 253
AseI ATTAAT 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 168
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 105
BmsI GCATC 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 51, 69
BseNI ACTGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 201
BspACI CCGC 1 cut(s) 185
BspCNI CTCAG 2 cut(s) 50, 70
BspLI GGNNCC 1 cut(s) 105
BsrI ACTGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 2 cut(s) 37, 78
BstF5I GGATG 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 34, 207
CviAII CATG 2 cut(s) 47, 204
CviJI RGCY 6 cut(s) 25, 55, 82, 175, 188, 275
CviKI_1 RGCY 6 cut(s) 25, 55, 82, 175, 188, 275
CviQI GTAC 2 cut(s) 34, 207
DdeI CTNAG 2 cut(s) 37, 78
EcoT22I ATGCAT 1 cut(s) 48
FaeI CATG 2 cut(s) 50, 207
FaiI YATR 8 cut(s) 44, 48, 58, 60, 112, 205, 227, 251
FaqI GGGAC 1 cut(s) 201
FatI CATG 2 cut(s) 46, 203
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 186
Hin1II CATG 2 cut(s) 50, 207
HindIII AAGCTT 1 cut(s) 273
Hpy188I TCNGA 2 cut(s) 19, 40
HpyAV CCTTC 2 cut(s) 124, 210
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 3 cut(s) 46, 72, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 2 cut(s) 37, 78
Hsp92II CATG 2 cut(s) 50, 207
LpnPI CCDG 1 cut(s) 226
LweI GCATC 1 cut(s) 107
MaeI CTAG 1 cut(s) 161
MboII GAAGA 1 cut(s) 238
MluCI AATT 1 cut(s) 12
MnlI CCTC 1 cut(s) 117
Mph1103I ATGCAT 1 cut(s) 48
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 52
NlaIII CATG 2 cut(s) 50, 207
NlaIV GGNNCC 1 cut(s) 105
NsiI ATGCAT 1 cut(s) 48
NspI RCATGY 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 187
PshBI ATTAAT 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 2 cut(s) 35, 208
RsaNI GTAC 2 cut(s) 34, 207
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 186
SetI ASST 9 cut(s) 27, 35, 57, 84, 177, 202, 266, 271, 277
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 180
SgeI CNNG 6 cut(s) 59, 81, 99, 173, 216, 225
Sse9I AATT 1 cut(s) 12
SsiI CCGC 1 cut(s) 185
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 181
TasI AATT 1 cut(s) 12
TatI WGTACW 1 cut(s) 206
TauI GCSGC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TspDTI ATGAA 4 cut(s) 135, 143, 192, 238
VspI ATTAAT 1 cut(s) 11
XceI RCATGY 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.