Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001637

Physical Location & Seq

Genomic Coordinates Reverse (-)

13830509 .. 13831813

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g14350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGTGTTTGCAAAATCGATTATTTTTGGCCACTTTAGACGATTAAGGGAAGCACAACCAATCCTTCTAGTCATCATTACTCCTGAAGTTCTCGTTATGTTCTGGACAAACATTCGATGTTCTTTGCATTTTGCACGACTACATGGAAAAAGATCACTGCAAAAGAGAAAACGGAAGCCAATATCAGAGCCATCAAAACAAACGCACGCTGGTCTGCCCTCAAAAAGACGTGGAGACTCAGCTGGAAGTAAATCTGCAGACTGTTCTGTACTAGGTGGGAATAAAATTATTGATGACGGTGATCAAGCCAAGGAAAGTGACAGATTGATGGATGATGACCAAATATCTGCTGGTAAATTGGAGGCGGATATGAAGACTGGTATTGACTCTGCCACAGCAGGTGAGCATAAAGTTATTGAACGTGAGGATGATAAGGCAAAGGAAAACGACGGATTAAAGGATAATGGCCAAATTTCTGTTGGTGAATTGGAGGCCGATATGAATGCTGGTATTGACTCCGCCACAGAAGGTGAGCATAAAGTTATTGATGAAAGTGTGGACAATCAAGCCAAGGAAAATGACGAATTGAAGGATAATGGCCAAATATCTGCTGGTGAATTGGCTGCACAGCTGACACCTGTGACTATGACCTTATCAAAGGGAGAGAGTCCCAAAGTTGATATTGAACCTTCTGGTAGGGAATGCTTCAAGGAACTAATGGAATTGGGCAAGGGTGCAGAGAATGCAAGATCACTTAACGTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEARLI-4

Protein Analysis

256

Amino Acids

27.79

Weight (kDa)

5.4

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15940 AT1G80810 AT1G80810 AT1G80810 AT1G80810 AT1G80810
fragaria_vesca	FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720
malus_domestica	MD17G1222300.v1.1
prunus_persica	Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1
pyrus_communis	pycom05g32820 pycom06g06660 pycom09g14350 pycom10g28890 pycom16g06390 pycom17g22600 pycom17g22610 pycom17g22620
rosa_chinensis	RchiOBHm_Chr2g0133121
rosa_laevigata	RLG00000019309
rosa_multiflora	Rmu_sc0000127.1_g000007 Rmu_sc0008365.1_g000009
rosa_roxburghii	Rroxscaffold_2G00111400
rosa_rugosa	Rorug02G0309800 Rorug02G0309900 Rorug02G0310000 Rorug02G0310100 Rorug02G0310200 Rorug02G0310300 Rorug02G0310300
rosa_samantha	Rh2AG362200 Rh2BG367900 Rh2CG345500 Rh2DG385000
rosa_wichuraiana	Rw2G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	389
AciI	CCGC	2 cut(s)	365, 519
AclI	AACGTT	1 cut(s)	759
AcoI	YGGCCR	3 cut(s)	28, 466, 598
AcsI	RAATTY	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	1 cut(s)	270
AgsI	TTSAA	4 cut(s)	419, 589, 686, 709
AjiI	CACGTC	1 cut(s)	230
AluBI	AGCT	2 cut(s)	242, 631
AluI	AGCT	2 cut(s)	242, 631
Alw26I	GTCTC	1 cut(s)	228
AoxI	GGCC	4 cut(s)	28, 466, 492, 598
ApeKI	GCWGC	1 cut(s)	623
ApoI	RAATTY	1 cut(s)	471
AsuHPI	GGTGA	5 cut(s)	311, 413, 494, 542, 626
BalI	TGGCCA	3 cut(s)	30, 468, 600
BbsI	GAAGAC	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	2 cut(s)	199, 322
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	2 cut(s)	68, 272
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	389
BisI	GCNGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	625
BmgBI	CACGTC	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	309, 570
Bse1I	ACTGG	1 cut(s)	382
BseCI	ATCGAT	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	309, 570
BseGI	GGATG	2 cut(s)	337, 433
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	610
BsgI	GTGCAG	2 cut(s)	609, 756
BshFI	GGCC	4 cut(s)	30, 468, 494, 600
BshVI	ATCGAT	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	654
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	654
BsmI	GAATGC	3 cut(s)	508, 707, 748
BsnI	GGCC	4 cut(s)	30, 468, 494, 600
Bsp143I	GATC	3 cut(s)	152, 301, 749
BspACI	CCGC	2 cut(s)	365, 519
BspANI	GGCC	4 cut(s)	30, 468, 494, 600
BspCNI	CTCAG	1 cut(s)	251
BspDI	ATCGAT	1 cut(s)	17
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	309, 570
BssMI	GATC	3 cut(s)	152, 301, 749
BssT1I	CCWWGG	2 cut(s)	309, 570
Bst4CI	ACNGT	2 cut(s)	263, 299
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	337, 433
BstKTI	GATC	3 cut(s)	155, 304, 752
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	3 cut(s)	152, 301, 749
BstMWI	GCNNNNNNNGC	1 cut(s)	743
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	610
BstV2I	GAAGAC	1 cut(s)	380
Bsu15I	ATCGAT	1 cut(s)	17
BsuRI	GGCC	4 cut(s)	30, 468, 494, 600
BsuTUI	ATCGAT	1 cut(s)	17
BtrI	CACGTC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	337, 433
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	1 cut(s)	143
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	1 cut(s)	238
DpnI	GATC	3 cut(s)	154, 303, 751
DpnII	GATC	3 cut(s)	152, 301, 749
EaeI	YGGCCR	3 cut(s)	28, 466, 598
EciI	GGCGGA	2 cut(s)	380, 508
Eco130I	CCWWGG	2 cut(s)	309, 570
Eco57I	CTGAAG	1 cut(s)	105
EcoT14I	CCWWGG	2 cut(s)	309, 570
ErhI	CCWWGG	2 cut(s)	309, 570
FaeI	CATG	1 cut(s)	146
FaiI	YATR	7 cut(s)	98, 144, 371, 408, 500, 537, 647
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	624
FokI	GGATG	2 cut(s)	344, 440
Fsp4HI	GCNGC	1 cut(s)	624
FspBI	CTAG	2 cut(s)	68, 272
GluI	GCNGC	1 cut(s)	624
HaeIII	GGCC	4 cut(s)	30, 468, 494, 600
Hin1II	CATG	1 cut(s)	146
HinfI	GANTC	4 cut(s)	236, 386, 515, 667
HphI	GGTGA	5 cut(s)	311, 413, 494, 542, 626
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	83, 103
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	4 cut(s)	74, 521, 583, 699
HpyCH4III	ACNGT	2 cut(s)	263, 299
HpyCH4IV	ACGT	3 cut(s)	229, 421, 759
HpyCH4V	TGCA	8 cut(s)	11, 127, 134, 160, 257, 626, 737, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	743
HpyF3I	CTNAG	1 cut(s)	238
HpySE526I	ACGT	3 cut(s)	229, 421, 759
Hsp92II	CATG	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	152, 301, 749
Lsp1109I	GCAGC	1 cut(s)	610
MaeI	CTAG	2 cut(s)	68, 272
MaeII	ACGT	3 cut(s)	229, 421, 759
MaeIII	GTNAC	2 cut(s)	317, 640
MalI	GATC	3 cut(s)	154, 303, 751
MboI	GATC	3 cut(s)	152, 301, 749
MboII	GAAGA	1 cut(s)	385
MlsI	TGGCCA	3 cut(s)	30, 468, 600
MluCI	AATT	7 cut(s)	285, 356, 471, 485, 584, 617, 722
MluNI	TGGCCA	3 cut(s)	30, 468, 600
MlyI	GAGTC	4 cut(s)	230, 380, 509, 676
MnlI	CCTC	4 cut(s)	229, 355, 418, 484
Mox20I	TGGCCA	3 cut(s)	30, 468, 600
MscI	TGGCCA	3 cut(s)	30, 468, 600
MseI	TTAA	3 cut(s)	44, 455, 756
Msp20I	TGGCCA	3 cut(s)	30, 468, 600
MspA1I	CMGCKG	2 cut(s)	242, 631
Mva1269I	GAATGC	3 cut(s)	508, 707, 748
MwoI	GCNNNNNNNGC	1 cut(s)	743
NdeII	GATC	3 cut(s)	152, 301, 749
NlaIII	CATG	1 cut(s)	146
NmuCI	GTSAC	2 cut(s)	317, 640
PaqCI	CACCTGC	1 cut(s)	389
PctI	GAATGC	3 cut(s)	508, 707, 748
PkrI	GCNGC	1 cut(s)	625
PleI	GAGTC	4 cut(s)	230, 380, 509, 675
PpsI	GAGTC	4 cut(s)	230, 380, 509, 675
Psp1406I	AACGTT	1 cut(s)	759
PstI	CTGCAG	1 cut(s)	259
PvuII	CAGCTG	2 cut(s)	242, 631
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	44, 455, 756
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	3 cut(s)	152, 301, 749
SchI	GAGTC	4 cut(s)	230, 380, 509, 676
SfcI	CTRYAG	1 cut(s)	255
Sse9I	AATT	7 cut(s)	285, 356, 471, 485, 584, 617, 722
SsiI	CCGC	2 cut(s)	365, 519
SspMI	CTAG	2 cut(s)	68, 272
StyI	CCWWGG	2 cut(s)	309, 570
TaaI	ACNGT	2 cut(s)	263, 299
TaiI	ACGT	3 cut(s)	232, 424, 762
TaqI	TCGA	2 cut(s)	17, 115
TasI	AATT	7 cut(s)	285, 356, 471, 485, 584, 617, 722
TatI	WGTACW	1 cut(s)	268
Tru1I	TTAA	3 cut(s)	44, 455, 756
Tru9I	TTAA	3 cut(s)	44, 455, 756
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	2 cut(s)	317, 640
TseI	GCWGC	1 cut(s)	623
Tsp45I	GTSAC	2 cut(s)	317, 640
TspDTI	ATGAA	3 cut(s)	386, 515, 564
TspGWI	ACGGA	2 cut(s)	187, 465
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	1 cut(s)	471
XcmI	CCANNNNNNNNNTGG	3 cut(s)	347, 476, 608
XspI	CTAG	2 cut(s)	68, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.