Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001637

Physical Location & Seq

Genomic Coordinates Reverse (-)

35496972 .. 35497342

Gene Structure 371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0309800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGTGCAATAAGGACAAGGCTTCCACATCTTTGAATGGGTGCGGCAAAGTGGACCACAAATATTGGGTGGTGATGTGGGGCCGGGGCCCGGGTGCCTCCAAAGGGGAAATGGAAACAGGTACGCATGTGTTCAAATCATGTCCTGCTCTTCATTGTTTTTGGCTTTTTGGGCCCTTGAAACTAAATGCTAGGACACACCCAGCGGGTAATGTGGTGGATTGGGTAATGGAGATGCTGGATTTTTTCACGATGGATCAGCGTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEARLI-4

Protein Analysis

88

Amino Acids

9.91

Weight (kDa)

8.43

Isoelectric Point (pI)

3.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15940 AT1G80810 AT1G80810 AT1G80810 AT1G80810 AT1G80810
fragaria_vesca	FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720
malus_domestica	MD17G1222300.v1.1
prunus_persica	Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1
pyrus_communis	pycom05g32820 pycom06g06660 pycom09g14350 pycom10g28890 pycom16g06390 pycom17g22600 pycom17g22610 pycom17g22620
rosa_chinensis	RchiOBHm_Chr2g0133121
rosa_laevigata	RLG00000019309
rosa_multiflora	Rmu_sc0000127.1_g000007 Rmu_sc0008365.1_g000009
rosa_roxburghii	Rroxscaffold_2G00111400
rosa_rugosa	Rorug02G0309800 Rorug02G0309900 Rorug02G0310000 Rorug02G0310100 Rorug02G0310200 Rorug02G0310300 Rorug02G0310300
rosa_samantha	Rh2AG362200 Rh2BG367900 Rh2CG345500 Rh2DG385000
rosa_wichuraiana	Rw2G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	2 cut(s)	42, 203
AclWI	GGATC	1 cut(s)	261
AfaI	GTAC	2 cut(s)	121, 262
AfiI	CCNNNNNNNGG	2 cut(s)	88, 102
AgsI	TTSAA	3 cut(s)	34, 133, 178
AlwI	GGATC	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	3 cut(s)	79, 85, 170
ApaI	GGGCCC	2 cut(s)	89, 174
AspS9I	GGNCC	6 cut(s)	52, 79, 85, 86, 170, 171
AsuC2I	CCSGG	3 cut(s)	83, 89, 90
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	52
BaeGI	GKGCMC	2 cut(s)	89, 174
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	2 cut(s)	89, 174
BccI	CCATC	1 cut(s)	244
BcnI	CCSGG	3 cut(s)	83, 89, 90
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	3 cut(s)	83, 89, 90
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	6 cut(s)	52, 79, 85, 86, 170, 171
BmiI	GGNNCC	5 cut(s)	80, 86, 87, 94, 172
BmrFI	CCNGG	3 cut(s)	83, 89, 90
BmsI	GCATC	1 cut(s)	222
BpuMI	CCSGG	3 cut(s)	83, 89, 90
BsaAI	YACGTR	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	82, 88
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 102
BseDI	CCNNGG	2 cut(s)	82, 88
BseLI	CCNNNNNNNGG	2 cut(s)	88, 102
BseSI	GKGCMC	2 cut(s)	89, 174
BseYI	CCCAGC	1 cut(s)	199
BshFI	GGCC	3 cut(s)	81, 87, 172
BshNI	GGYRCC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	82, 89
BsiWI	CGTACG	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	88, 102
BsnI	GGCC	3 cut(s)	81, 87, 172
BsoBI	CYCGRG	1 cut(s)	88
Bsp120I	GGGCCC	2 cut(s)	85, 170
Bsp1286I	GDGCHC	2 cut(s)	89, 174
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	2 cut(s)	42, 203
BspANI	GGCC	3 cut(s)	81, 87, 172
BspLI	GGNNCC	5 cut(s)	80, 86, 87, 94, 172
BspPI	GGATC	1 cut(s)	261
BspQI	GCTCTTC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	82, 88
BssMI	GATC	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	264
BstKTI	GATC	1 cut(s)	256
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	81, 87, 88
BstSLI	GKGCMC	2 cut(s)	89, 174
BsuRI	GGCC	3 cut(s)	81, 87, 172
Cfr13I	GGNCC	6 cut(s)	52, 79, 85, 86, 170, 171
Cfr9I	CCCGGG	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	120, 261
CspCI	CAANNNNNGTGG	2 cut(s)	44, 79
CviAII	CATG	2 cut(s)	125, 138
CviJI	RGCY	5 cut(s)	20, 81, 87, 163, 172
CviKI_1	RGCY	5 cut(s)	20, 81, 87, 163, 172
CviQI	GTAC	2 cut(s)	120, 261
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco24I	GRGCYC	2 cut(s)	89, 174
Eco47I	GGWCC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	88
EcoO109I	RGGNCCY	2 cut(s)	85, 171
EcoT38I	GRGCYC	2 cut(s)	89, 174
FaeI	CATG	2 cut(s)	128, 141
FaiI	YATR	2 cut(s)	126, 139
FatI	CATG	2 cut(s)	124, 137
FauI	CCCGC	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	43
FriOI	GRGCYC	2 cut(s)	89, 174
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	43
GsaI	CCCAGC	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	81, 87, 172
HapII	CCGG	2 cut(s)	82, 89
Hin1II	CATG	2 cut(s)	128, 141
HpaII	CCGG	2 cut(s)	82, 89
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	128, 141
Kzo9I	GATC	1 cut(s)	253
LguI	GCTCTTC	1 cut(s)	153
LpnPI	CCDG	6 cut(s)	95, 102, 102, 156, 213, 221
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	263
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	89, 174
MnlI	CCTC	1 cut(s)	106
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	2 cut(s)	82, 89
MspR9I	CCNGG	3 cut(s)	83, 89, 90
MwoI	GCNNNNNNNGC	1 cut(s)	169
NciI	CCSGG	3 cut(s)	83, 89, 90
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	128, 141
NlaIV	GGNNCC	5 cut(s)	80, 86, 87, 94, 172
NspI	RCATGY	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	153
Pfl23II	CGTACG	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	44
Ppu21I	YACGTR	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	199
PspLI	CGTACG	1 cut(s)	260
PspN4I	GGNNCC	5 cut(s)	80, 86, 87, 94, 172
PspOMI	GGGCCC	2 cut(s)	85, 170
PspPI	GGNCC	6 cut(s)	52, 79, 85, 86, 170, 171
RsaI	GTAC	2 cut(s)	121, 262
RsaNI	GTAC	2 cut(s)	120, 261
SapI	GCTCTTC	1 cut(s)	153
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	6 cut(s)	52, 79, 85, 86, 170, 171
ScrFI	CCNGG	3 cut(s)	83, 89, 90
SduI	GDGCHC	2 cut(s)	89, 174
SetI	ASST	2 cut(s)	121, 266
SfaNI	GCATC	1 cut(s)	222
SinI	GGWCC	1 cut(s)	52
SmaI	CCCGGG	1 cut(s)	90
SsiI	CCGC	2 cut(s)	42, 203
SspI	AATATT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	3 cut(s)	81, 87, 88
TaiI	ACGT	1 cut(s)	266
TauI	GCSGC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	140
TspMI	CCCGGG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	52
XceI	RCATGY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmaI	CCCGGG	1 cut(s)	88
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.