Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000127.1

Orthogroup ID

OG0001637

Physical Location & Seq

Genomic Coordinates Forward (+)

33130 .. 34780

Gene Structure 1651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000127.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgacatctttcagtttagcctcagtgctttataatgatggggagaaagaaaacctgaaccttcgaaagcaacggtggcaactgattggagatgattcaaaagatccatgtatacaactgggacaaaagagcgatacaccaaagactgatgcttctgacataccacaaaagaggaagcggaaagcaaaatcagagtcatctaagcaagcaaatgctggtttctccttgaaaagaactggagcctcagctggcttatccactgttgagtgtatgaagtctgacagtaaatctgcagaccgttctacagttagtgagcctattaaagatgaaacacgggatgacaagtccaaggaaattgacaggttgacggatgatgaaggtgaaatatatgctggcaagttgaaggcagatatgaagactggtattgactctacgcagatcacacctgaggctatgaacttgtctaaggaagagagtgcagaagttgatattgaaccctgtgttagagatggtgccaaagaaatgaaagaattgagcaatggtgcaaaggatgcaagttcctccccttcacctgtgttggacaaggctgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEARLI-4

Protein Analysis

197

Amino Acids

21.44

Weight (kDa)

5.18

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15940 AT1G80810 AT1G80810 AT1G80810 AT1G80810 AT1G80810
fragaria_vesca	FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720
malus_domestica	MD17G1222300.v1.1
prunus_persica	Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1
pyrus_communis	pycom05g32820 pycom06g06660 pycom09g14350 pycom10g28890 pycom16g06390 pycom17g22600 pycom17g22610 pycom17g22620
rosa_chinensis	RchiOBHm_Chr2g0133121
rosa_laevigata	RLG00000019309
rosa_multiflora	Rmu_sc0000127.1_g000007 Rmu_sc0008365.1_g000009
rosa_roxburghii	Rroxscaffold_2G00111400
rosa_rugosa	Rorug02G0309800 Rorug02G0309900 Rorug02G0310000 Rorug02G0310100 Rorug02G0310200 Rorug02G0310300 Rorug02G0310300
rosa_samantha	Rh2AG362200 Rh2BG367900 Rh2CG345500 Rh2DG385000
rosa_wichuraiana	Rw2G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	512
AccI	GTMKAC	1 cut(s)	112
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	98
AgsI	TTSAA	4 cut(s)	99, 229, 403, 494
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
AlwI	GGATC	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AsuHPI	GGTGA	2 cut(s)	392, 561
AsuII	TTCGAA	1 cut(s)	64
AxyI	CCTNAGG	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	512
BbsI	GAAGAC	1 cut(s)	422
BbvCI	CCTCAGC	1 cut(s)	244
BccI	CCATC	2 cut(s)	32, 503
BfmI	CTRYAG	2 cut(s)	291, 303
BmiI	GGNNCC	2 cut(s)	241, 514
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	139, 541
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	422
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	244
Bpu14I	TTCGAA	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	348
Bse1I	ACTGG	3 cut(s)	123, 241, 424
Bse21I	CCTNAGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	3 cut(s)	343, 376, 556
BseMI	GCAATG	1 cut(s)	544
BseMII	CTCAG	3 cut(s)	36, 258, 438
BseNI	ACTGG	3 cut(s)	123, 241, 424
BsgI	GTGCAG	1 cut(s)	498
BshNI	GGYRCC	1 cut(s)	512
BslFI	GGGAC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	135
Bsp119I	TTCGAA	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	103, 438
BspACI	CCGC	1 cut(s)	178
BspCNI	CTCAG	3 cut(s)	35, 257, 439
BspLI	GGNNCC	2 cut(s)	241, 514
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	1 cut(s)	98
BspT104I	TTCGAA	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	544
BsrI	ACTGG	3 cut(s)	123, 241, 424
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	2 cut(s)	103, 438
BssNAI	GTATAC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	348
Bst1107I	GTATAC	1 cut(s)	113
Bst4CI	ACNGT	5 cut(s)	75, 262, 284, 299, 307
Bst6I	CTCTTC	1 cut(s)	465
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstBI	TTCGAA	1 cut(s)	64
BstC8I	GCNNGC	3 cut(s)	207, 250, 394
BstDEI	CTNAG	5 cut(s)	22, 201, 244, 447, 465
BstF5I	GGATG	3 cut(s)	343, 376, 556
BstKTI	GATC	2 cut(s)	106, 441
BstMBI	GATC	2 cut(s)	103, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 551
BstSFI	CTRYAG	2 cut(s)	291, 303
BstV2I	GAAGAC	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BstZ17I	GTATAC	1 cut(s)	113
Bsu36I	CCTNAGG	1 cut(s)	447
BtsCI	GGATG	3 cut(s)	343, 376, 556
BtsIMutI	CAGTG	2 cut(s)	30, 258
Cac8I	GCNNGC	3 cut(s)	207, 250, 394
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	7 cut(s)	20, 242, 248, 252, 316, 452, 587
CviKI_1	RGCY	7 cut(s)	20, 242, 248, 252, 316, 452, 587
DdeI	CTNAG	5 cut(s)	22, 201, 244, 447, 465
DpnI	GATC	2 cut(s)	105, 440
DpnII	GATC	2 cut(s)	103, 438
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	348
Eco81I	CCTNAGG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	1 cut(s)	111
FaiI	YATR	9 cut(s)	33, 109, 113, 161, 272, 388, 390, 413, 455
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	112
FokI	GGATG	3 cut(s)	350, 383, 563
GsuI	CTGGAG	1 cut(s)	258
Hin1II	CATG	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	3 cut(s)	95, 194, 428
HphI	GGTGA	2 cut(s)	392, 561
Hpy166II	GTNNAC	2 cut(s)	113, 366
Hpy188I	TCNGA	3 cut(s)	157, 193, 280
Hpy8I	GTNNAC	2 cut(s)	113, 366
HpyAV	CCTTC	4 cut(s)	71, 371, 397, 576
HpyCH4III	ACNGT	5 cut(s)	75, 262, 284, 299, 307
HpyCH4V	TGCA	4 cut(s)	293, 479, 545, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 551
HpyF3I	CTNAG	5 cut(s)	22, 201, 244, 447, 465
Hsp92II	CATG	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	103, 438
LmnI	GCTCC	1 cut(s)	239
LweI	GCATC	2 cut(s)	139, 541
MalI	GATC	2 cut(s)	105, 440
MboI	GATC	2 cut(s)	103, 438
MboII	GAAGA	2 cut(s)	427, 482
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	2 cut(s)	354, 530
MlyI	GAGTC	2 cut(s)	203, 422
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	5 cut(s)	31, 165, 253, 442, 571
MseI	TTAA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	76, 551
NdeII	GATC	2 cut(s)	103, 438
NlaIII	CATG	1 cut(s)	111
NlaIV	GGNNCC	2 cut(s)	241, 514
NspV	TTCGAA	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	95
PleI	GAGTC	2 cut(s)	202, 422
PpsI	GAGTC	2 cut(s)	202, 422
PsiI	TTATAA	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	241, 514
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	321
Sau3AI	GATC	2 cut(s)	103, 438
SchI	GAGTC	2 cut(s)	203, 422
SetI	ASST	7 cut(s)	57, 63, 250, 365, 382, 448, 574
SfaNI	GCATC	2 cut(s)	139, 541
SfcI	CTRYAG	2 cut(s)	291, 303
SfuI	TTCGAA	1 cut(s)	64
Sse9I	AATT	2 cut(s)	354, 530
SsiI	CCGC	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	5 cut(s)	75, 262, 284, 299, 307
TaqI	TCGA	1 cut(s)	64
TasI	AATT	2 cut(s)	354, 530
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	30, 265
TspDTI	ATGAA	6 cut(s)	287, 342, 390, 428, 470, 539
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	2 cut(s)	30, 265
XmiI	GTMKAC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.