Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001637

Physical Location & Seq

Genomic Coordinates Forward (+)

35606011 .. 35606325

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0310200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGGTTCCTCCAGTTTGATCAGAGAGAACTGGGGGTTGATCCAGCAAGCCAAGTCGTTGTTCGGGTCGGATCAGCCTGACCCGGAAACAAGACCGCTCGAGTTCATCAACCGGAACTTCTCCATTTTTGACATCGGCATCATTTCCGGCGTGCAGGAAGAGGATCACAGCTCGTACAATGACGACAAGAAACATGTTTTTGGTTCTACCAAGAAGAAGAACAGAGCTCCGAACCCAAACCTGGACTTCGCAGATTCCGACTGCCAGATGAAAAGAGCACCGAAGAAACGGGGCCGGAAACCCGGGCTAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEARLI-4

Protein Analysis

104

Amino Acids

11.69

Weight (kDa)

9.17

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15940 AT1G80810 AT1G80810 AT1G80810 AT1G80810 AT1G80810
fragaria_vesca	FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720
malus_domestica	MD17G1222300.v1.1
prunus_persica	Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1
pyrus_communis	pycom05g32820 pycom06g06660 pycom09g14350 pycom10g28890 pycom16g06390 pycom17g22600 pycom17g22610 pycom17g22620
rosa_chinensis	RchiOBHm_Chr2g0133121
rosa_laevigata	RLG00000019309
rosa_multiflora	Rmu_sc0000127.1_g000007 Rmu_sc0008365.1_g000009
rosa_roxburghii	Rroxscaffold_2G00111400
rosa_rugosa	Rorug02G0309800 Rorug02G0309900 Rorug02G0310000 Rorug02G0310100 Rorug02G0310200 Rorug02G0310300 Rorug02G0310300
rosa_samantha	Rh2AG362200 Rh2BG367900 Rh2CG345500 Rh2DG385000
rosa_wichuraiana	Rw2G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	97
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	3 cut(s)	34, 78, 171
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	241, 308
AflIII	ACRYGT	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	240
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	171, 227
AluI	AGCT	2 cut(s)	171, 227
Alw21I	GWGCWC	2 cut(s)	229, 280
AlwI	GGATC	3 cut(s)	34, 78, 171
Ama87I	CYCGRG	2 cut(s)	98, 302
AoxI	GGCC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	3 cut(s)	83, 303, 304
AvaI	CYCGRG	2 cut(s)	98, 302
BanII	GRGCYC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	229, 280
BciT130I	CCWGG	1 cut(s)	242
BclI	TGATCA	1 cut(s)	18
BcnI	CCSGG	3 cut(s)	83, 303, 304
BfaI	CTAG	1 cut(s)	308
Bme1390I	CCNGG	4 cut(s)	83, 242, 303, 304
BmeT110I	CYCGRG	2 cut(s)	98, 302
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	7, 293
BmrFI	CCNGG	4 cut(s)	83, 242, 303, 304
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	40
BpuMI	CCSGG	3 cut(s)	83, 303, 304
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 308
Bse1I	ACTGG	2 cut(s)	12, 35
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	302
BseLI	CCNNNNNNNGG	2 cut(s)	241, 308
BseNI	ACTGG	2 cut(s)	12, 35
BsgI	GTGCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	229, 280
BsiHKCI	CYCGRG	2 cut(s)	98, 302
BsiSI	CCGG	5 cut(s)	83, 112, 147, 295, 303
BslI	CCNNNNNNNGG	2 cut(s)	241, 308
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	2 cut(s)	98, 302
Bsp1286I	GDGCHC	2 cut(s)	229, 280
Bsp143I	GATC	4 cut(s)	18, 39, 70, 163
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	7, 293
BspPI	GGATC	3 cut(s)	34, 78, 171
BsrBI	CCGCTC	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	12, 35
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	4 cut(s)	18, 39, 70, 163
Bst2UI	CCWGG	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	48, 152
BstKTI	GATC	4 cut(s)	21, 42, 73, 166
BstMBI	GATC	4 cut(s)	18, 39, 70, 163
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	4 cut(s)	81, 240, 301, 302
BsuRI	GGCC	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	48, 152
Cfr13I	GGNCC	1 cut(s)	292
Cfr9I	CCCGGG	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	7 cut(s)	50, 76, 171, 227, 294, 307, 312
CviKI_1	RGCY	7 cut(s)	50, 76, 171, 227, 294, 307, 312
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	4 cut(s)	20, 41, 72, 165
DpnII	GATC	4 cut(s)	18, 39, 70, 163
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	227
Eco88I	CYCGRG	2 cut(s)	98, 302
EcoICRI	GAGCTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	1 cut(s)	197
FaiI	YATR	1 cut(s)	195
FatI	CATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	18
FriOI	GRGCYC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	5 cut(s)	83, 112, 147, 295, 303
Hin1II	CATG	1 cut(s)	197
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	5 cut(s)	83, 112, 147, 295, 303
Hpy188I	TCNGA	4 cut(s)	23, 70, 231, 259
HpyCH4V	TGCA	1 cut(s)	154
Hsp92II	CATG	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	18, 39, 70, 163
LmnI	GCTCC	1 cut(s)	232
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	308
MalI	GATC	4 cut(s)	20, 41, 72, 165
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	4 cut(s)	18, 39, 70, 163
MboII	GAAGA	4 cut(s)	170, 226, 229, 295
MhlI	GDGCHC	2 cut(s)	229, 280
MmeI	TCCRAC	2 cut(s)	48, 282
MnlI	CCTC	2 cut(s)	19, 154
MspI	CCGG	5 cut(s)	83, 112, 147, 295, 303
MspR9I	CCNGG	4 cut(s)	83, 242, 303, 304
MvaI	CCWGG	1 cut(s)	242
NciI	CCSGG	3 cut(s)	83, 303, 304
NdeII	GATC	4 cut(s)	18, 39, 70, 163
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	2 cut(s)	7, 293
NspI	RCATGY	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	98
PciI	ACATGT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	254
PscI	ACATGT	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	7, 293
PspPI	GGNCC	1 cut(s)	292
PspXI	VCTCGAGB	1 cut(s)	98
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	229
Sau3AI	GATC	4 cut(s)	18, 39, 70, 163
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	4 cut(s)	83, 242, 303, 304
SduI	GDGCHC	2 cut(s)	229, 280
SetI	ASST	3 cut(s)	173, 229, 243
SfaNI	GCATC	1 cut(s)	147
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmaI	CCCGGG	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SsiI	CCGC	1 cut(s)	95
SspMI	CTAG	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	4 cut(s)	81, 240, 301, 302
TaqI	TCGA	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	94, 284
TspMI	CCCGGG	1 cut(s)	302
XceI	RCATGY	1 cut(s)	197
XhoI	CTCGAG	1 cut(s)	98
XmaI	CCCGGG	1 cut(s)	302
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.