Rorug02G0310000

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001637
Physical Location & Seq
Reverse (-)
35545623 .. 35546462
840 bp
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UTR
Exon/CDS
Intron
Rorug02G0310000.1

Sequence Viewer

Length: 426 bp
ATGGATGATACTAATAGTAACCTAGTTGGTAGTAGTTGTAGCAGTGGACAGATGAAGCATCAAACTCAAAGTCAAGCAAAGACGAGAAGCTCCAGCTGCAAATCCAAGAAGAAGCCGATCAAAGTGGTTTACATATCAAACCCGATGAAGATTACAACGAGCGCCTCCGAATTCAGGGCTTTGGTTCAGCAGCTCACCGGCCAAGATGCTGACGACCTGCCAGATCTCCATCGTACTAGCAACAACCACCTCATCACACCAATGGTCAGCAGCAGGCGGCAGCCAGAAAGTTCAAACTCAAATACCACCACCCAATATTATGATGATCATGATGAGCATCACCAGCACTTGTATGACGACGTCGATGGTCTTTTTGTGCCTGAAATGCTTGATAGCTTTGTGCCTGCCGTCAAGGGTTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEARLI-4

Protein Analysis

141

Amino Acids

15.76

Weight (kDa)

6.12

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 45 - 71 1e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 363
Acc36I ACCTGC 1 cut(s) 225
AciI CCGC 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 1 cut(s) 294
AluBI AGCT 4 cut(s) 90, 96, 193, 396
AluI AGCT 4 cut(s) 90, 96, 193, 396
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 4 cut(s) 96, 190, 270, 280
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
AspLEI GCGC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 187, 332
BbvI GCAGC 4 cut(s) 83, 202, 282, 292
BccI CCATC 2 cut(s) 237, 359
BceAI ACGGC 1 cut(s) 392
BclI TGATCA 1 cut(s) 325
BfaI CTAG 2 cut(s) 23, 237
BfoI RGCGCY 1 cut(s) 165
BfuAI ACCTGC 1 cut(s) 225
BglII AGATCT 1 cut(s) 223
BisI GCNGC 5 cut(s) 97, 191, 271, 278, 281
BlsI GCNGC 5 cut(s) 98, 192, 272, 279, 282
BmsI GCATC 3 cut(s) 67, 196, 346
BpmI CTGGAG 1 cut(s) 76
BsaBI GATNNNNATC 2 cut(s) 228, 336
BsaHI GRCGYC 1 cut(s) 360
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 197
Bse8I GATNNNNATC 2 cut(s) 228, 336
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 2 cut(s) 228, 336
BseLI CCNNNNNNNGG 1 cut(s) 174
BseXI GCAGC 4 cut(s) 83, 202, 282, 292
BshFI GGCC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 174
BsnI GGCC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 117, 223, 325
BspACI CCGC 1 cut(s) 277
BspANI GGCC 1 cut(s) 201
BspHI TCATGA 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 197
BssMI GATC 3 cut(s) 117, 223, 325
BssNI GRCGYC 1 cut(s) 360
BstACI GRCGYC 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 275, 405
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 3 cut(s) 120, 226, 328
BstMBI GATC 3 cut(s) 117, 223, 325
BstMWI GCNNNNNNNGC 3 cut(s) 96, 343, 385
BstV1I GCAGC 4 cut(s) 83, 202, 282, 292
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
BveI ACCTGC 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 275, 405
CciI TCATGA 1 cut(s) 328
CfoI GCGC 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 197
Csp6I GTAC 1 cut(s) 234
CviAII CATG 1 cut(s) 329
CviJI RGCY 8 cut(s) 90, 96, 115, 179, 193, 201, 283, 396
CviKI_1 RGCY 8 cut(s) 90, 96, 115, 179, 193, 201, 283, 396
CviQI GTAC 1 cut(s) 234
DpnI GATC 3 cut(s) 119, 225, 327
DpnII GATC 3 cut(s) 117, 223, 325
EaeI YGGCCR 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 170
FaeI CATG 1 cut(s) 332
FaiI YATR 4 cut(s) 134, 321, 330, 354
FatI CATG 1 cut(s) 328
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 5 cut(s) 97, 191, 271, 278, 281
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 5 cut(s) 97, 191, 271, 278, 281
FspBI CTAG 2 cut(s) 23, 237
GlaI GCGC 1 cut(s) 163
GluI GCNGC 5 cut(s) 97, 191, 271, 278, 281
GsuI CTGGAG 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 198
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 1 cut(s) 332
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HpaII CCGG 1 cut(s) 198
HphI GGTGA 2 cut(s) 187, 332
Hpy166II GTNNAC 2 cut(s) 47, 130
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 2 cut(s) 47, 130
Hpy99I CGWCG 2 cut(s) 362, 365
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 343, 385
HpySE526I ACGT 1 cut(s) 360
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 1 cut(s) 332
HspAI GCGC 1 cut(s) 162
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 3 cut(s) 117, 223, 325
LmnI GCTCC 1 cut(s) 95
Lsp1109I GCAGC 4 cut(s) 83, 202, 282, 292
LweI GCATC 3 cut(s) 67, 196, 346
MaeI CTAG 2 cut(s) 23, 237
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 17
MalI GATC 3 cut(s) 119, 225, 327
MboI GATC 3 cut(s) 117, 223, 325
MboII GAAGA 2 cut(s) 121, 160
MflI RGATCY 1 cut(s) 223
MluCI AATT 1 cut(s) 170
MnlI CCTC 2 cut(s) 175, 260
MslI CAYNNNNRTG 2 cut(s) 260, 351
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 96, 343, 385
NdeII GATC 3 cut(s) 117, 223, 325
NlaIII CATG 1 cut(s) 332
PagI TCATGA 1 cut(s) 328
PflFI GACNNNGTC 1 cut(s) 359
PkrI GCNGC 5 cut(s) 98, 192, 272, 279, 282
PsuI RGATCY 1 cut(s) 223
PsyI GACNNNGTC 1 cut(s) 359
PvuII CAGCTG 1 cut(s) 96
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
RseI CAYNNNNRTG 2 cut(s) 260, 351
SatI GCNGC 5 cut(s) 97, 191, 271, 278, 281
Sau3AI GATC 3 cut(s) 117, 223, 325
SetI ASST 8 cut(s) 24, 92, 98, 195, 219, 252, 363, 398
SfaNI GCATC 3 cut(s) 67, 196, 346
SmiMI CAYNNNNRTG 2 cut(s) 260, 351
Sse9I AATT 1 cut(s) 170
SsiI CCGC 1 cut(s) 277
SspI AATATT 1 cut(s) 317
SspMI CTAG 2 cut(s) 23, 237
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 363
TasI AATT 1 cut(s) 170
TauI GCSGC 1 cut(s) 280
TscAI CASTG 1 cut(s) 49
TseI GCWGC 4 cut(s) 96, 190, 270, 280
TspDTI ATGAA 2 cut(s) 68, 161
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 1 cut(s) 359
XapI RAATTY 1 cut(s) 170
XspI CTAG 2 cut(s) 23, 237
ZraI GACGTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.