Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001637

Physical Location & Seq

Genomic Coordinates Forward (+)

35519923 .. 35524628

Gene Structure 4706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0309900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGGCTCAGCAGAAAGAATCCGATCCCATTTTGTTCGTGAGTGATGACCAACTGAGCGATGATATTGAGGACAACAAGATCGAGAGTGGCAGCAGCAGCAGTTCTGGTAGTGACAATGCTCATCGTCCTCAGATGTCCTCCCCCGGTAATAGTTTTTCGTCTCAGATATGGCCGCAGAGTTACAGGGAGACACTGGATTCTTACGTTATTGCAGCATCACCAAATTTTGGTAATCTTGGATTTGTTCCACCTGGTAGTAGCTATTCCTATTCCAGCTTTAAGAGTAGTTCCGATGTGGGTTCAAAGGCTCCGTTATTGTCTGCCGACGAACGTGAACGCTTTTCTCAGAATTGGGACAAAACCTCTAGAGCCCAATCATTATGGTCACAAAGGTCGACACTAAATAAGCAGGTCACGGGAGAATTGCCTGCTGCCTATGGATGTAGCTTGACTCAAACCGTATTCAATGGAATTAATGTAATGGCGGGAGTTGGGCTTCTGTCTACACCTTATACAGTGAAAGAAGCTGGCTGGGCAAGTATTGTGGTGCTACTTCTTTTTGCAATCGTGTGTTGTTACACAGCCATACTCATGAGATTCTGCTTTGAGACCAATAAAGGAATTACAAGTTACCCAGATTTAGGAGAAGCTGCATTCGGAAGATATGGGCGTATTTTCATATCTATCATTTTGTACGCAGAACTCTATTCTTACTGTGTAGAATTCATCATTTTGGAAGGAGATAATCTCAGCAGGCTATTCCCAGGGACATCCTTGACTTGGGCTGGTTTTCACTTGGACTCTTTGCACTTATTTGGAATTTTAACTGCCTTGATTGTTCTACCAACTGTTTGGTTGAAGGATCTTCGTTTGATTTCATTCCTTTCAGCTGGTGGGGTCATTGTTACAATTTTGATCGTTCTATGTGTAATTTTACTTGGTACAACTGGTGGGATTGGATTTCATCAAACTGCTCAAGTAGTGAACATTAATGGAATTCCACTTGTAATTGGTGTATATGGGTTTTGCTTTGCTGGGCATACTGTGTTTCCAAATATTTACCAATCCATGGCAGACAAAAAACAATTTACTAAAGCCGTGATTATATGCTTTCTATTGGTTGCTCTGTTATATGGCAGTGTTGCAGTCATGGGATTTCTCATGTTTGGTCAAAGCACATTGTCTCAGATAACTTTAAATATGCCACCGCATGCACTTGCTTCCAAAGTTGCGTTGTGGACAACTGAGCTTCTGCCTGTTGGACTTTCTAATAGTTTTTGGTGTTTCATTCTTTTAAGAACAGCACTTGTCATCTCTACTGTTGGTGCTGCTTTTGTTATTCCTTTCTTTGGTCTTGTGATGGCTTTAATAGGCTCTCTACTCAGCGTACTCGTGTCGGTGATAGTGCCAGCACTATGCTTCCTGAAAATAGCAGGAATGAAAGCTTCGAGGATACAGGTTGTTTCAAGTATCACTGTAGCTGCATTGGGAGTTGTTGCTGGAATCCTTGGTACATATTCTGCAGTATCAAAAATCGTGAAGAGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEARLI-4

Protein Analysis

516

Amino Acids

55.54

Weight (kDa)

6.98

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	149 - 406	1.6e-43	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	160 - 472	9.8e-06	Tryptophan/tyrosine permease family
Aa_trans	PF01490	426 - 508	6.7e-07	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15940 AT1G80810 AT1G80810 AT1G80810 AT1G80810 AT1G80810
fragaria_vesca	FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720
malus_domestica	MD17G1222300.v1.1
prunus_persica	Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1
pyrus_communis	pycom05g32820 pycom06g06660 pycom09g14350 pycom10g28890 pycom16g06390 pycom17g22600 pycom17g22610 pycom17g22620
rosa_chinensis	RchiOBHm_Chr2g0133121
rosa_laevigata	RLG00000019309
rosa_multiflora	Rmu_sc0000127.1_g000007 Rmu_sc0008365.1_g000009
rosa_roxburghii	Rroxscaffold_2G00111400
rosa_rugosa	Rorug02G0309800 Rorug02G0309900 Rorug02G0310000 Rorug02G0310100 Rorug02G0310200 Rorug02G0310300 Rorug02G0310300
rosa_samantha	Rh2AG362200 Rh2BG367900 Rh2CG345500 Rh2DG385000
rosa_wichuraiana	Rw2G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	400
AccB7I	CCANNNNNTGG	2 cut(s)	227, 1069
AccI	GTMKAC	2 cut(s)	395, 503
AciI	CCGC	3 cut(s)	173, 485, 1208
AclWI	GGATC	2 cut(s)	17, 870
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	4 cut(s)	223, 722, 819, 996
AfaI	GTAC	4 cut(s)	695, 943, 1389, 1513
AfiI	CCNNNNNNNGG	5 cut(s)	227, 641, 780, 1069, 1349
AgsI	TTSAA	4 cut(s)	303, 466, 859, 1467
AjnI	CCWGG	2 cut(s)	250, 763
AluBI	AGCT	9 cut(s)	261, 276, 447, 527, 650, 890, 1249, 1445, 1481
AluI	AGCT	9 cut(s)	261, 276, 447, 527, 650, 890, 1249, 1445, 1481
Alw26I	GTCTC	4 cut(s)	165, 182, 602, 1188
AlwI	GGATC	2 cut(s)	17, 870
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	8 cut(s)	90, 93, 96, 212, 431, 650, 1328, 1481
ApoI	RAATTY	4 cut(s)	223, 722, 819, 996
AseI	ATTAAT	2 cut(s)	474, 990
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	210, 1411
BanII	GRGCYC	1 cut(s)	373
BauI	CACGAG	1 cut(s)	1391
BbvI	GCAGC	8 cut(s)	102, 105, 108, 224, 418, 637, 1315, 1468
BccI	CCATC	1 cut(s)	1354
BceAI	ACGGC	1 cut(s)	1082
BciT130I	CCWGG	2 cut(s)	252, 765
BciVI	GTATCC	1 cut(s)	1446
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	4 cut(s)	165, 182, 602, 1188
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	2 cut(s)	1476, 1521
BfuAI	ACCTGC	1 cut(s)	400
BfuI	GTATCC	1 cut(s)	1446
BisI	GCNGC	9 cut(s)	91, 94, 97, 173, 213, 432, 651, 1329, 1482
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	9 cut(s)	92, 95, 98, 174, 214, 433, 652, 1330, 1483
Bme1390I	CCNGG	3 cut(s)	144, 252, 765
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	3 cut(s)	144, 252, 765
BmsI	GCATC	1 cut(s)	224
BplI	GAGNNNNNCTC	2 cut(s)	732, 764
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	960
BpuMI	CCSGG	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	5 cut(s)	142, 763, 764, 1068, 1507
Bsc4I	CCNNNNNNNGG	5 cut(s)	227, 641, 780, 1069, 1349
Bse1I	ACTGG	2 cut(s)	198, 952
BseBI	CCWGG	2 cut(s)	252, 765
BseDI	CCNNGG	5 cut(s)	142, 763, 764, 1068, 1507
BseGI	GGATG	2 cut(s)	446, 770
BseLI	CCNNNNNNNGG	5 cut(s)	227, 641, 780, 1069, 1349
BseMII	CTCAG	9 cut(s)	20, 44, 143, 176, 359, 763, 1199, 1236, 1396
BseNI	ACTGG	2 cut(s)	198, 952
BseXI	GCAGC	8 cut(s)	102, 105, 108, 224, 418, 637, 1315, 1468
BseYI	CCCAGC	2 cut(s)	531, 1034
BshFI	GGCC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	368, 781
BslI	CCNNNNNNNGG	5 cut(s)	227, 641, 780, 1069, 1349
BsmAI	GTCTC	4 cut(s)	165, 182, 602, 1188
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	2 cut(s)	368, 781
BsmI	GAATGC	1 cut(s)	653
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	4 cut(s)	22, 78, 862, 915
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	1068
BspACI	CCGC	3 cut(s)	173, 485, 1208
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	9 cut(s)	19, 45, 142, 175, 358, 762, 1198, 1237, 1395
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	1525
BspMI	ACCTGC	1 cut(s)	400
BspPI	GGATC	2 cut(s)	17, 870
BspTNI	GGTCTC	1 cut(s)	602
BsrI	ACTGG	2 cut(s)	198, 952
BssECI	CCNNGG	5 cut(s)	142, 763, 764, 1068, 1507
BssMI	GATC	4 cut(s)	22, 78, 862, 915
BssSI	CACGAG	1 cut(s)	1391
BssT1I	CCWWGG	2 cut(s)	1068, 1507
Bst2BI	CACGAG	1 cut(s)	1391
Bst2UI	CCWGG	2 cut(s)	252, 765
Bst4CI	ACNGT	7 cut(s)	460, 517, 716, 850, 1045, 1321, 1477
Bst6I	CTCTTC	1 cut(s)	1535
BstC8I	GCNNGC	5 cut(s)	429, 529, 755, 1212, 1410
BstDEI	CTNAG	9 cut(s)	6, 53, 129, 162, 345, 749, 1185, 1245, 1382
BstDSI	CCRYGG	1 cut(s)	1068
BstF5I	GGATG	2 cut(s)	446, 770
BstKTI	GATC	4 cut(s)	25, 81, 865, 918
BstMAI	GTCTC	4 cut(s)	165, 182, 602, 1188
BstMBI	GATC	4 cut(s)	22, 78, 862, 915
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 533
BstNI	CCWGG	2 cut(s)	252, 765
BstNSI	RCATGY	1 cut(s)	1214
BstSCI	CCNGG	3 cut(s)	142, 250, 763
BstSFI	CTRYAG	2 cut(s)	1476, 1521
BstV1I	GCAGC	8 cut(s)	102, 105, 108, 224, 418, 637, 1315, 1468
BstX2I	RGATCY	1 cut(s)	862
BstXI	CCANNNNNNTGG	1 cut(s)	852
BstYI	RGATCY	1 cut(s)	862
BsuI	GTATCC	1 cut(s)	1446
BsuRI	GGCC	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	1068
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	446, 770
BtsI	GCAGTG	1 cut(s)	1144
BtsIMutI	CAGTG	4 cut(s)	191, 522, 1144, 1473
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	5 cut(s)	429, 529, 755, 1212, 1410
CciI	TCATGA	1 cut(s)	591
CsiI	ACCWGGT	1 cut(s)	250
Csp6I	GTAC	4 cut(s)	694, 942, 1388, 1512
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	5 cut(s)	592, 1069, 1150, 1162, 1211
CviQI	GTAC	4 cut(s)	694, 942, 1388, 1512
DdeI	CTNAG	9 cut(s)	6, 53, 129, 162, 345, 749, 1185, 1245, 1382
DpnI	GATC	4 cut(s)	24, 80, 864, 917
DpnII	GATC	4 cut(s)	22, 78, 862, 915
DraI	TTTAAA	1 cut(s)	1197
EaeI	YGGCCR	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	1535
EarI	CTCTTC	1 cut(s)	1535
Eco130I	CCWWGG	2 cut(s)	1068, 1507
Eco24I	GRGCYC	1 cut(s)	373
Eco31I	GGTCTC	1 cut(s)	602
EcoRI	GAATTC	2 cut(s)	722, 996
EcoRII	CCWGG	2 cut(s)	250, 763
EcoT14I	CCWWGG	2 cut(s)	1068, 1507
EcoT38I	GRGCYC	1 cut(s)	373
ErhI	CCWWGG	2 cut(s)	1068, 1507
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	5 cut(s)	595, 1072, 1153, 1165, 1214
FaqI	GGGAC	2 cut(s)	368, 781
FatI	CATG	5 cut(s)	591, 1068, 1149, 1161, 1210
FauI	CCCGC	1 cut(s)	478
FblI	GTMKAC	2 cut(s)	395, 503
Fnu4HI	GCNGC	9 cut(s)	91, 94, 97, 173, 213, 432, 651, 1329, 1482
FokI	GGATG	2 cut(s)	453, 757
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	9 cut(s)	91, 94, 97, 173, 213, 432, 651, 1329, 1482
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	9 cut(s)	91, 94, 97, 173, 213, 432, 651, 1329, 1482
GsaI	CCCAGC	2 cut(s)	535, 1038
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	5 cut(s)	595, 1072, 1153, 1165, 1214
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	1443
HinfI	GANTC	6 cut(s)	17, 197, 451, 597, 800, 1503
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	210, 1411
Hpy166II	GTNNAC	5 cut(s)	335, 396, 504, 985, 1239
Hpy188I	TCNGA	7 cut(s)	22, 132, 165, 292, 348, 659, 1188
Hpy188III	TCNNGA	6 cut(s)	37, 82, 366, 592, 1423, 1537
Hpy8I	GTNNAC	5 cut(s)	335, 396, 504, 985, 1239
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	731, 853
HpyCH4III	ACNGT	7 cut(s)	460, 517, 716, 850, 1045, 1321, 1477
HpyCH4IV	ACGT	2 cut(s)	204, 331
HpyCH4V	TGCA	8 cut(s)	212, 563, 653, 808, 1145, 1214, 1484, 1523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 533
HpyF3I	CTNAG	9 cut(s)	6, 53, 129, 162, 345, 749, 1185, 1245, 1382
HpySE526I	ACGT	2 cut(s)	204, 331
Hsp92II	CATG	5 cut(s)	595, 1072, 1153, 1165, 1214
Kzo9I	GATC	4 cut(s)	22, 78, 862, 915
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	8 cut(s)	102, 105, 108, 224, 418, 637, 1315, 1468
LweI	GCATC	1 cut(s)	224
MabI	ACCWGGT	1 cut(s)	250
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	2 cut(s)	204, 331
MaeIII	GTNAC	7 cut(s)	110, 179, 384, 412, 575, 629, 904
MalI	GATC	4 cut(s)	24, 80, 864, 917
MboI	GATC	4 cut(s)	22, 78, 862, 915
MboII	GAAGA	2 cut(s)	672, 857
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	1 cut(s)	373
MlyI	GAGTC	2 cut(s)	445, 794
MmeI	TCCRAC	1 cut(s)	1240
MnlI	CCTC	5 cut(s)	61, 138, 148, 373, 1443
MseI	TTAA	7 cut(s)	279, 474, 824, 990, 1196, 1295, 1367
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	890
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	3 cut(s)	144, 252, 765
Mva1269I	GAATGC	1 cut(s)	653
MvaI	CCWGG	2 cut(s)	252, 765
MwoI	GCNNNNNNNGC	2 cut(s)	96, 533
NciI	CCSGG	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	1068
NdeII	GATC	4 cut(s)	22, 78, 862, 915
NlaIII	CATG	5 cut(s)	595, 1072, 1153, 1165, 1214
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	110, 384, 412
NspI	RCATGY	1 cut(s)	1214
PaeI	GCATGC	1 cut(s)	1214
PagI	TCATGA	1 cut(s)	591
PasI	CCCWGGG	1 cut(s)	764
PctI	GAATGC	1 cut(s)	653
PfeI	GAWTC	4 cut(s)	17, 197, 597, 1503
PflMI	CCANNNNNTGG	2 cut(s)	227, 1069
PkrI	GCNGC	9 cut(s)	92, 95, 98, 174, 214, 433, 652, 1330, 1483
PleI	GAGTC	2 cut(s)	445, 794
PpsI	GAGTC	2 cut(s)	445, 794
PshBI	ATTAAT	2 cut(s)	474, 990
Psp6I	CCWGG	2 cut(s)	250, 763
PspFI	CCCAGC	2 cut(s)	531, 1034
PspGI	CCWGG	2 cut(s)	250, 763
PspN4I	GGNNCC	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	1525
PsuI	RGATCY	1 cut(s)	862
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	4 cut(s)	695, 943, 1389, 1513
RsaNI	GTAC	4 cut(s)	694, 942, 1388, 1512
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	1 cut(s)	394
SaqAI	TTAA	7 cut(s)	279, 474, 824, 990, 1196, 1295, 1367
SatI	GCNGC	9 cut(s)	91, 94, 97, 173, 213, 432, 651, 1329, 1482
Sau3AI	GATC	4 cut(s)	22, 78, 862, 915
SchI	GAGTC	2 cut(s)	445, 794
ScrFI	CCNGG	3 cut(s)	144, 252, 765
SduI	GDGCHC	1 cut(s)	373
SexAI	ACCWGGT	1 cut(s)	250
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	2 cut(s)	1476, 1521
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	975
SmoI	CTYRAG	1 cut(s)	975
SphI	GCATGC	1 cut(s)	1214
SsiI	CCGC	3 cut(s)	173, 485, 1208
SspI	AATATT	1 cut(s)	1057
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	142, 250, 763
StyI	CCWWGG	2 cut(s)	1068, 1507
TaaI	ACNGT	7 cut(s)	460, 517, 716, 850, 1045, 1321, 1477
TaiI	ACGT	2 cut(s)	207, 334
TaqI	TCGA	3 cut(s)	81, 395, 1448
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	4 cut(s)	17, 197, 597, 1503
Tru1I	TTAA	7 cut(s)	279, 474, 824, 990, 1196, 1295, 1367
Tru9I	TTAA	7 cut(s)	279, 474, 824, 990, 1196, 1295, 1367
TscAI	CASTG	4 cut(s)	198, 522, 1144, 1480
TseFI	GTSAC	3 cut(s)	110, 384, 412
TseI	GCWGC	8 cut(s)	90, 93, 96, 212, 431, 650, 1328, 1481
Tsp45I	GTSAC	3 cut(s)	110, 384, 412
TspDTI	ATGAA	6 cut(s)	667, 715, 867, 953, 1276, 1454
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	4 cut(s)	198, 522, 1144, 1480
Van91I	CCANNNNNTGG	2 cut(s)	227, 1069
VspI	ATTAAT	2 cut(s)	474, 990
XapI	RAATTY	4 cut(s)	223, 722, 819, 996
XbaI	TCTAGA	1 cut(s)	365
XceI	RCATGY	1 cut(s)	1214
XmiI	GTMKAC	2 cut(s)	395, 503
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.