Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001637

Physical Location & Seq

Genomic Coordinates Forward (+)

29365187 .. 29367624

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCCCAAAAGCTCGAGCAGCAGCTCAGGGAGGTGGGATCGAAGCTCGAGACCCATCATTCTTCCAAAGACGCTCTCGTCAAGCTCTTAAAGCAAGCTGCATCATGTCTTTCGGACTTGGATCGATCACCTCCAGCGTCTACGTTGGAGTCAATGCAGCCTTTACTTAATGCAATTGTCAAGCCAGAGCTGTTGAAGCATCAAGATAGAGACGTCAAGCTTCTAGTTGCAACCTGTATTTGTGAGATAACTCGAATTACTGCACCTGAAGCTCCTTATAGTGATGAAGTGCTAAAGGACATATTTCACTTGATCGTGGGAACTTTTAGTGGATTGAAAGATACGAGTGGTCCATCATTTGGTAGAAGAGTACTCATTTTGGAGACTCTTGCCAAATATAGGTCATGTGTTGTAATGTTAGATCTTGAATGTGATGATCTGGTGAATGAAATGTTCAGTACATTTTTTGCGGTTGCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.8

Weight (kDa)

5.8

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDS5	PF20168	24 - 159	3.7e-48	Sister chromatid cohesion protein PDS5 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15940 AT1G80810 AT1G80810 AT1G80810 AT1G80810 AT1G80810
fragaria_vesca	FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720
malus_domestica	MD17G1222300.v1.1
prunus_persica	Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1
pyrus_communis	pycom05g32820 pycom06g06660 pycom09g14350 pycom10g28890 pycom16g06390 pycom17g22600 pycom17g22610 pycom17g22620
rosa_chinensis	RchiOBHm_Chr2g0133121
rosa_laevigata	RLG00000019309
rosa_multiflora	Rmu_sc0000127.1_g000007 Rmu_sc0008365.1_g000009
rosa_roxburghii	Rroxscaffold_2G00111400
rosa_rugosa	Rorug02G0309800 Rorug02G0309900 Rorug02G0310000 Rorug02G0310100 Rorug02G0310200 Rorug02G0310300 Rorug02G0310300
rosa_samantha	Rh2AG362200 Rh2BG367900 Rh2CG345500 Rh2DG385000
rosa_wichuraiana	Rw2G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AatII	GACGTC	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccI	GTMKAC	1 cut(s)	140
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	2 cut(s)	46, 129
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	2 cut(s)	372, 460
AfiI	CCNNNNNNNGG	2 cut(s)	359, 399
AgsI	TTSAA	3 cut(s)	196, 337, 428
AluBI	AGCT	8 cut(s)	13, 25, 46, 85, 98, 190, 220, 272
AluI	AGCT	8 cut(s)	13, 25, 46, 85, 98, 190, 220, 272
Alw26I	GTCTC	3 cut(s)	44, 204, 377
AlwI	GGATC	2 cut(s)	46, 129
Ama87I	CYCGRG	2 cut(s)	14, 47
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	19, 22, 98, 157
AspS9I	GGNCC	2 cut(s)	4, 350
AsuHPI	GGTGA	2 cut(s)	120, 454
AvaI	CYCGRG	2 cut(s)	14, 47
AvaII	GGWCC	1 cut(s)	350
BbvI	GCAGC	4 cut(s)	31, 34, 85, 169
BccI	CCATC	2 cut(s)	63, 361
BcoDI	GTCTC	3 cut(s)	44, 204, 377
BfaI	CTAG	1 cut(s)	224
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	4 cut(s)	20, 23, 99, 158
BlsI	GCNGC	4 cut(s)	21, 24, 100, 159
BmcAI	AGTACT	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	2 cut(s)	14, 47
BmgT120I	GGNCC	2 cut(s)	4, 350
BmsI	GCATC	2 cut(s)	110, 208
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 399
BseCI	ATCGAT	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	359, 399
BseMII	CTCAG	1 cut(s)	40
BseXI	GCAGC	4 cut(s)	31, 34, 85, 169
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	124
BsiHKCI	CYCGRG	2 cut(s)	14, 47
BslI	CCNNNNNNNGG	2 cut(s)	359, 399
BsmAI	GTCTC	3 cut(s)	44, 204, 377
BsmBI	CGTCTC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	2 cut(s)	14, 47
Bsp143I	GATC	6 cut(s)	38, 121, 125, 312, 421, 436
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	124
BspPI	GGATC	2 cut(s)	46, 129
BspTNI	GGTCTC	1 cut(s)	44
BssMI	GATC	6 cut(s)	38, 121, 125, 312, 421, 436
BssNI	GRCGYC	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	361
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	26
BstKTI	GATC	6 cut(s)	41, 124, 128, 315, 424, 439
BstMAI	GTCTC	3 cut(s)	44, 204, 377
BstMBI	GATC	6 cut(s)	38, 121, 125, 312, 421, 436
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 91, 196, 269
BstV1I	GCAGC	4 cut(s)	31, 34, 85, 169
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	4, 350
ClaI	ATCGAT	1 cut(s)	124
CseI	GACGC	2 cut(s)	80, 126
Csp6I	GTAC	2 cut(s)	371, 459
CviAII	CATG	2 cut(s)	105, 405
CviQI	GTAC	2 cut(s)	371, 459
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	6 cut(s)	40, 123, 127, 314, 423, 438
DpnII	GATC	6 cut(s)	38, 121, 125, 312, 421, 436
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	361
Eco31I	GGTCTC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	2 cut(s)	14, 47
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	2 cut(s)	108, 408
FaiI	YATR	5 cut(s)	106, 279, 302, 399, 406
FatI	CATG	2 cut(s)	104, 404
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	4 cut(s)	20, 23, 99, 158
Fsp4HI	GCNGC	4 cut(s)	20, 23, 99, 158
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	4 cut(s)	20, 23, 99, 158
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	2 cut(s)	80, 126
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	108, 408
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	2 cut(s)	149, 385
HphI	GGTGA	2 cut(s)	120, 454
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	3 cut(s)	49, 203, 425
Hpy8I	GTNNAC	1 cut(s)	141
HpyCH4IV	ACGT	2 cut(s)	143, 213
HpyCH4V	TGCA	5 cut(s)	101, 157, 173, 230, 263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 91, 196, 269
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	2 cut(s)	143, 213
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	108, 408
Kzo9I	GATC	6 cut(s)	38, 121, 125, 312, 421, 436
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	6 cut(s)	13, 147, 198, 247, 279, 425
Lsp1109I	GCAGC	4 cut(s)	31, 34, 85, 169
LweI	GCATC	2 cut(s)	110, 208
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	2 cut(s)	143, 213
MalI	GATC	6 cut(s)	40, 123, 127, 314, 423, 438
MboI	GATC	6 cut(s)	38, 121, 125, 312, 421, 436
MboII	GAAGA	2 cut(s)	54, 378
MfeI	CAATTG	1 cut(s)	174
MflI	RGATCY	1 cut(s)	421
MluCI	AATT	2 cut(s)	174, 255
MlyI	GAGTC	2 cut(s)	158, 379
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	2 cut(s)	25, 141
MseI	TTAA	2 cut(s)	89, 168
MunI	CAATTG	1 cut(s)	174
MwoI	GCNNNNNNNGC	4 cut(s)	19, 91, 196, 269
NdeII	GATC	6 cut(s)	38, 121, 125, 312, 421, 436
NlaIII	CATG	2 cut(s)	108, 408
PaeR7I	CTCGAG	2 cut(s)	14, 47
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	21, 24, 100, 159
PleI	GAGTC	2 cut(s)	157, 379
PpsI	GAGTC	2 cut(s)	157, 379
PspPI	GGNCC	2 cut(s)	4, 350
PspXI	VCTCGAGB	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	2 cut(s)	372, 460
RsaNI	GTAC	2 cut(s)	371, 459
SaqAI	TTAA	2 cut(s)	89, 168
SatI	GCNGC	4 cut(s)	20, 23, 99, 158
Sau3AI	GATC	6 cut(s)	38, 121, 125, 312, 421, 436
Sau96I	GGNCC	2 cut(s)	4, 350
ScaI	AGTACT	1 cut(s)	372
SchI	GAGTC	2 cut(s)	158, 379
SfaNI	GCATC	2 cut(s)	110, 208
Sfr274I	CTCGAG	2 cut(s)	14, 47
SinI	GGWCC	1 cut(s)	350
SlaI	CTCGAG	2 cut(s)	14, 47
SmlI	CTYRAG	2 cut(s)	14, 47
SmoI	CTYRAG	2 cut(s)	14, 47
Sse9I	AATT	2 cut(s)	174, 255
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	1 cut(s)	224
TaiI	ACGT	2 cut(s)	146, 216
TaqI	TCGA	5 cut(s)	15, 41, 48, 124, 253
TasI	AATT	2 cut(s)	174, 255
TatI	WGTACW	2 cut(s)	370, 458
Tru1I	TTAA	2 cut(s)	89, 168
Tru9I	TTAA	2 cut(s)	89, 168
TseI	GCWGC	4 cut(s)	19, 22, 98, 157
TspDTI	ATGAA	2 cut(s)	300, 462
Van91I	CCANNNNNTGG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	350
XhoI	CTCGAG	2 cut(s)	14, 47
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	224
ZraI	GACGTC	1 cut(s)	214
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.