Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001637

Physical Location & Seq

Genomic Coordinates Forward (+)

21005114 .. 21008189

Gene Structure 3076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCCTGATCTCGGTGAACGGTTGGTTGACAGAAGAATAAAGGTTTGGTGGCCACAGGACAAAAAGTTTTATGAAGGTGTTGTTTCTTCTTACGACCCTGCCAAAAAGAAACACTTGGTGTTGTATGCTGATGGGGATGAAGAAAACCTGAACCTCAAAAAGCAGCGCTGGAAACTGATTGGAGATGATTTGCCAGACGTCGAATTGGAGAATCTGATAAAACCTTTTGCTGCTTCTGATACACTACCACAAAAGAGAAAACAGAAACCAAAATCAGGGCCATCAAAACAAACAAACACCGGTCTGTCCTCAAAAAGGATATCTAGACGTGGAGTCTCAGCTGGAAGCAAATCTGCGGACTGTTTTGTACTAGGTGGGCATAAAGTTACTGAAGAATGTGACGGTGATCAAACCAAGGAAAATGACGGATTGAAGGATGATGGCCAAATATCTGCTGGTAAATTGGAGGCGAATATGAAGACTGGTATTGGCTCTGCAACAGTAGGCGAGCATAAAGTTATTGATGAACGTGAGGATGATCAAGTCAAGGAAAATGACGGAGTAAAGGATAATGGCCAAATATCTGTTGGCAAATTGGAGGCCAATATGAAAACTGGTATTGACTCTGCCACAGTAGGTGAGCATAAGGTTATTGATGAACGTGAAGGGGATCAAGCCATGGAAAATGATGGATTGAAGGATAATGGCCAAATGTCTGCTGGTAAATCGAAGGCAGATATGAAGGCTGGTATTGACTCTGCTGCAGTAGGTGACCATAAAGTTATTGATGAACGAGAGGGGGGTCAAGCCAAGGAAAATGCCGGATTGAAGGATAATGGCCAAATGTATGCTGGTGAATTGGAGGCTGGTATGAAGACTGGTATTGACTCTGCACAGCTCACACCGGAGACTATGACCTTATCGAAGGGAGAGAGTCCAAAAGTCGATATTGAACCTTCTGGTAGGGAATGCTTCAAAGAACTGATGGAATTGGGCAAGGGTGCAGAGAACGCAAGATCACTTAACGTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEARLI-4

Protein Analysis

345

Amino Acids

37.27

Weight (kDa)

5.21

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15940 AT1G80810 AT1G80810 AT1G80810 AT1G80810 AT1G80810
fragaria_vesca	FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720
malus_domestica	MD17G1222300.v1.1
prunus_persica	Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1
pyrus_communis	pycom05g32820 pycom06g06660 pycom09g14350 pycom10g28890 pycom16g06390 pycom17g22600 pycom17g22610 pycom17g22620
rosa_chinensis	RchiOBHm_Chr2g0133121
rosa_laevigata	RLG00000019309
rosa_multiflora	Rmu_sc0000127.1_g000007 Rmu_sc0008365.1_g000009
rosa_roxburghii	Rroxscaffold_2G00111400
rosa_rugosa	Rorug02G0309800 Rorug02G0309900 Rorug02G0310000 Rorug02G0310100 Rorug02G0310200 Rorug02G0310300 Rorug02G0310300
rosa_samantha	Rh2AG362200 Rh2BG367900 Rh2CG345500 Rh2DG385000
rosa_wichuraiana	Rw2G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	201
AciI	CCGC	1 cut(s)	356
AclI	AACGTT	1 cut(s)	1026
AclWI	GGATC	1 cut(s)	678
AcoI	YGGCCR	5 cut(s)	50, 442, 574, 706, 838
AcuI	CTGAAG	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	369
AfeI	AGCGCT	1 cut(s)	167
AfiI	CCNNNNNNNGG	3 cut(s)	11, 275, 315
AgeI	ACCGGT	1 cut(s)	299
AgsI	TTSAA	5 cut(s)	433, 697, 829, 953, 976
AhdI	GACNNNNNGTC	1 cut(s)	332
AjiI	CACGTC	1 cut(s)	329
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AluBI	AGCT	2 cut(s)	341, 898
AluI	AGCT	2 cut(s)	341, 898
Alw26I	GTCTC	2 cut(s)	340, 902
AlwI	GGATC	1 cut(s)	678
Aor51HI	AGCGCT	1 cut(s)	167
AoxI	GGCC	7 cut(s)	50, 278, 442, 574, 600, 706, 838
ApeKI	GCWGC	3 cut(s)	163, 230, 761
AsiGI	ACCGGT	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	5 cut(s)	26, 416, 650, 782, 866
BalI	TGGCCA	5 cut(s)	52, 444, 576, 708, 840
BbsI	GAAGAC	2 cut(s)	485, 881
BbvI	GCAGC	3 cut(s)	175, 217, 748
BccI	CCATC	5 cut(s)	125, 289, 434, 683, 979
BclI	TGATCA	2 cut(s)	406, 538
BcoDI	GTCTC	2 cut(s)	340, 902
BfaI	CTAG	2 cut(s)	324, 371
BfmI	CTRYAG	1 cut(s)	762
BfoI	RGCGCY	1 cut(s)	169
BisI	GCNGC	3 cut(s)	164, 231, 762
BlsI	GCNGC	3 cut(s)	165, 232, 763
BmeRI	GACNNNNNGTC	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	278
BpiI	GAAGAC	2 cut(s)	485, 881
BsaHI	GRCGYC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	414, 678, 810
BsaWI	WCCGGW	2 cut(s)	299, 904
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 275, 315
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	3 cut(s)	487, 619, 883
BseDI	CCNNGG	3 cut(s)	414, 678, 810
BseGI	GGATG	3 cut(s)	142, 442, 541
BseLI	CCNNNNNNNGG	3 cut(s)	11, 275, 315
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	3 cut(s)	487, 619, 883
BseXI	GCAGC	3 cut(s)	175, 217, 748
BsgI	GTGCAG	2 cut(s)	876, 1023
BshFI	GGCC	7 cut(s)	52, 280, 444, 576, 602, 708, 840
BshTI	ACCGGT	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	300, 822, 905
BslI	CCNNNNNNNGG	3 cut(s)	11, 275, 315
BsmAI	GTCTC	2 cut(s)	340, 902
BsmI	GAATGC	1 cut(s)	974
BsnI	GGCC	7 cut(s)	52, 280, 444, 576, 602, 708, 840
Bsp143I	GATC	5 cut(s)	7, 406, 538, 670, 1016
Bsp19I	CCATGG	1 cut(s)	678
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	7 cut(s)	52, 280, 444, 576, 602, 708, 840
BspCNI	CTCAG	1 cut(s)	350
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	1 cut(s)	678
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	487, 619, 883
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	3 cut(s)	414, 678, 810
BssMI	GATC	5 cut(s)	7, 406, 538, 670, 1016
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	3 cut(s)	414, 678, 810
Bst4CI	ACNGT	5 cut(s)	21, 362, 404, 502, 634
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	1 cut(s)	337
BstDSI	CCRYGG	1 cut(s)	678
BstEII	GGTNACC	1 cut(s)	770
BstENI	CCTNNNNNAGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	142, 442, 541
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	5 cut(s)	10, 409, 541, 673, 1019
BstMAI	GTCTC	2 cut(s)	340, 902
BstMBI	GATC	5 cut(s)	7, 406, 538, 670, 1016
BstMWI	GCNNNNNNNGC	1 cut(s)	1010
BstPI	GGTNACC	1 cut(s)	770
BstSFI	CTRYAG	1 cut(s)	762
BstV1I	GCAGC	3 cut(s)	175, 217, 748
BstV2I	GAAGAC	2 cut(s)	485, 881
BsuRI	GGCC	7 cut(s)	52, 280, 444, 576, 602, 708, 840
BtgI	CCRYGG	1 cut(s)	678
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	3 cut(s)	142, 442, 541
Cac8I	GCNNGC	1 cut(s)	509
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	368
CspAI	ACCGGT	1 cut(s)	299
CviAII	CATG	1 cut(s)	679
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	5 cut(s)	9, 408, 540, 672, 1018
DpnII	GATC	5 cut(s)	7, 406, 538, 670, 1016
DraIII	CACNNNGTG	1 cut(s)	118
DriI	GACNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	5 cut(s)	50, 442, 574, 706, 838
Eam1105I	GACNNNNNGTC	1 cut(s)	332
Eco130I	CCWWGG	3 cut(s)	414, 678, 810
Eco32I	GATATC	1 cut(s)	321
Eco47III	AGCGCT	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	411
Eco91I	GGTNACC	1 cut(s)	770
EcoNI	CCTNNNNNAGG	1 cut(s)	313
EcoO65I	GGTNACC	1 cut(s)	770
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	3 cut(s)	414, 678, 810
ErhI	CCWWGG	3 cut(s)	414, 678, 810
FaeI	CATG	1 cut(s)	682
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	1 cut(s)	678
FbaI	TGATCA	2 cut(s)	406, 538
Fnu4HI	GCNGC	3 cut(s)	164, 231, 762
FokI	GGATG	3 cut(s)	149, 449, 548
Fsp4HI	GCNGC	3 cut(s)	164, 231, 762
FspBI	CTAG	2 cut(s)	324, 371
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	3 cut(s)	164, 231, 762
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	7 cut(s)	52, 280, 444, 576, 602, 708, 840
HapII	CCGG	3 cut(s)	300, 822, 905
HhaI	GCGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	682
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	6 cut(s)	211, 333, 623, 755, 887, 934
HpaII	CCGG	3 cut(s)	300, 822, 905
HphI	GGTGA	5 cut(s)	26, 416, 650, 782, 866
Hpy166II	GTNNAC	2 cut(s)	17, 28
Hpy188I	TCNGA	2 cut(s)	216, 238
Hpy188III	TCNNGA	1 cut(s)	324
Hpy8I	GTNNAC	2 cut(s)	17, 28
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	9 cut(s)	68, 427, 659, 691, 724, 736, 823, 919, 966
HpyCH4III	ACNGT	5 cut(s)	21, 362, 404, 502, 634
HpyCH4IV	ACGT	5 cut(s)	198, 328, 529, 661, 1026
HpyCH4V	TGCA	4 cut(s)	497, 764, 893, 1004
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1010
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	5 cut(s)	198, 328, 529, 661, 1026
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	682
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	2 cut(s)	406, 538
Kzo9I	GATC	5 cut(s)	7, 406, 538, 670, 1016
Lsp1109I	GCAGC	3 cut(s)	175, 217, 748
MaeI	CTAG	2 cut(s)	324, 371
MaeII	ACGT	5 cut(s)	198, 328, 529, 661, 1026
MaeIII	GTNAC	3 cut(s)	385, 398, 770
MalI	GATC	5 cut(s)	9, 408, 540, 672, 1018
MboI	GATC	5 cut(s)	7, 406, 538, 670, 1016
MboII	GAAGA	6 cut(s)	45, 78, 152, 404, 490, 886
MlsI	TGGCCA	5 cut(s)	52, 444, 576, 708, 840
MluCI	AATT	5 cut(s)	203, 461, 593, 857, 989
MluNI	TGGCCA	5 cut(s)	52, 444, 576, 708, 840
MlyI	GAGTC	5 cut(s)	342, 617, 749, 881, 943
MnlI	CCTC	7 cut(s)	164, 319, 460, 526, 592, 790, 856
Mox20I	TGGCCA	5 cut(s)	52, 444, 576, 708, 840
MscI	TGGCCA	5 cut(s)	52, 444, 576, 708, 840
MseI	TTAA	1 cut(s)	1023
Msp20I	TGGCCA	5 cut(s)	52, 444, 576, 708, 840
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	3 cut(s)	300, 822, 905
Mva1269I	GAATGC	1 cut(s)	974
MwoI	GCNNNNNNNGC	1 cut(s)	1010
NcoI	CCATGG	1 cut(s)	678
NdeII	GATC	5 cut(s)	7, 406, 538, 670, 1016
NlaIII	CATG	1 cut(s)	682
NmuCI	GTSAC	2 cut(s)	398, 770
PctI	GAATGC	1 cut(s)	974
PfeI	GAWTC	1 cut(s)	211
PinAI	ACCGGT	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	165, 232, 763
PleI	GAGTC	5 cut(s)	341, 617, 749, 881, 942
PpsI	GAGTC	5 cut(s)	341, 617, 749, 881, 942
Psp1406I	AACGTT	1 cut(s)	1026
PspEI	GGTNACC	1 cut(s)	770
PspPI	GGNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	1023
SatI	GCNGC	3 cut(s)	164, 231, 762
Sau3AI	GATC	5 cut(s)	7, 406, 538, 670, 1016
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	5 cut(s)	342, 617, 749, 881, 943
SfcI	CTRYAG	1 cut(s)	762
Sse9I	AATT	5 cut(s)	203, 461, 593, 857, 989
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	2 cut(s)	324, 371
StyI	CCWWGG	3 cut(s)	414, 678, 810
TaaI	ACNGT	5 cut(s)	21, 362, 404, 502, 634
TaiI	ACGT	5 cut(s)	201, 331, 532, 664, 1029
TaqI	TCGA	4 cut(s)	201, 728, 923, 945
TasI	AATT	5 cut(s)	203, 461, 593, 857, 989
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	1023
Tru9I	TTAA	1 cut(s)	1023
TseFI	GTSAC	2 cut(s)	398, 770
TseI	GCWGC	3 cut(s)	163, 230, 761
Tsp45I	GTSAC	2 cut(s)	398, 770
TspDTI	ATGAA	9 cut(s)	87, 153, 491, 540, 623, 672, 755, 804, 887
TspGWI	ACGGA	2 cut(s)	441, 573
XagI	CCTNNNNNAGG	1 cut(s)	313
XbaI	TCTAGA	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	4 cut(s)	452, 584, 716, 848
XspI	CTAG	2 cut(s)	324, 371
ZraI	GACGTC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.