pycom16g06390

Sister chromatid cohesion protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001637
Physical Location & Seq
Forward (+)
4106422 .. 4107307
886 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g06390.1

Sequence Viewer

Length: 612 bp
ATGCCGCGTGTTGCTCTTCTTGGAAAGGTGCTCTGCCCGTTGTTTTTCTCTTTTGCACAGCTTTGCCCACGCGTCCTCCATTGTCTTCCACGCTCGATCATCCTTTCCGATTCCATCTCTCCAATTTTCTTTCACCTTTCCATTTGCTTCTCTCAGCCCTCATTTTCTCAGTTTGCCCTTGATCATGTATGGTGCCCGTGCGTGAAGATGCTTCCTCTTTTTCTTTTCCTCTTCTTTTTTCCTCTTTTTATTTTCCTCTTCTTTTTTGTCTCTGCCGTTCCGTTTCTCTTAGTTTTCCGTCTGTCTTTTGATTTCGATTCCGATCGGATCTTCTCGAAGGTGTTTGGCGTTTTCCCCCCTGTTTTGAGCGAACGAATCGCTCCCGTTGAGGAAGCTGAGGGTGTGTTGTCAAATGTTAGGCAAGCACCACACAGATCCATGCAAGATGCATGTCTACCGATAATGGAGGCATTAATTTCTGATGAGCTGTTTAGGTACTCAGATATGCATGTGAAGCTATATGTTGCTTCTTGCATTACTGAGCTTACGAGAATAACAGCATCGGTTCCTCCATACAACGATGAATGGATGAAGGTACAACAGCTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PEARLI-4

Protein Analysis

204

Amino Acids

23.38

Weight (kDa)

6.18

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDS5 PF20168 136 - 197 7.5e-08 Sister chromatid cohesion protein PDS5 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AccI GTMKAC 1 cut(s) 454
AccII CGCG 2 cut(s) 7, 72
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 335, 429
AfaI GTAC 2 cut(s) 497, 597
AflIII ACRYGT 1 cut(s) 70
AluBI AGCT 6 cut(s) 61, 395, 487, 517, 544, 604
AluI AGCT 6 cut(s) 61, 395, 487, 517, 544, 604
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 2 cut(s) 335, 429
AseI ATTAAT 1 cut(s) 473
AsuHPI GGTGA 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 33
BbvCI CCTCAGC 1 cut(s) 396
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 260
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 274
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmiI GGNNCC 2 cut(s) 194, 567
BmsI GCATC 3 cut(s) 198, 436, 569
BpiI GAAGAC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 590
Bpu10I CCTNAGC 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 321
BsaXI ACNNNNNCTCC 3 cut(s) 60, 90, 588
Bse1I ACTGG 1 cut(s) 607
Bse8I GATNNNNATC 1 cut(s) 321
BseGI GGATG 2 cut(s) 99, 594
BseJI GATNNNNATC 1 cut(s) 321
BseMII CTCAG 5 cut(s) 167, 182, 387, 513, 531
BseNI ACTGG 1 cut(s) 607
BseSI GKGCMC 1 cut(s) 197
Bsh1236I CGCG 2 cut(s) 7, 72
Bsh1285I CGRYCG 1 cut(s) 325
BshNI GGYRCC 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 33, 197
Bsp143I GATC 5 cut(s) 96, 181, 322, 327, 434
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 5 cut(s) 166, 181, 388, 512, 532
BspFNI CGCG 2 cut(s) 7, 72
BspLI GGNNCC 2 cut(s) 194, 567
BspPI GGATC 2 cut(s) 335, 429
BspQI GCTCTTC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 607
BssMI GATC 5 cut(s) 96, 181, 322, 327, 434
Bst6I CTCTTC 3 cut(s) 21, 236, 263
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 6 cut(s) 153, 168, 289, 396, 499, 540
BstF5I GGATG 2 cut(s) 99, 594
BstFNI CGCG 2 cut(s) 7, 72
BstKTI GATC 5 cut(s) 99, 184, 325, 330, 437
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 5 cut(s) 96, 181, 322, 327, 434
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 1 cut(s) 514
BstNSI RCATGY 2 cut(s) 453, 512
BstSLI GKGCMC 1 cut(s) 197
BstUI CGCG 2 cut(s) 7, 72
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 2 cut(s) 327, 434
BstYI RGATCY 2 cut(s) 327, 434
BtsCI GGATG 2 cut(s) 99, 594
Cac8I GCNNGC 1 cut(s) 423
CseI GACGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 496, 596
CviAII CATG 4 cut(s) 185, 439, 450, 509
CviJI RGCY 7 cut(s) 61, 157, 395, 487, 517, 544, 604
CviKI_1 RGCY 7 cut(s) 61, 157, 395, 487, 517, 544, 604
CviQI GTAC 2 cut(s) 496, 596
DdeI CTNAG 6 cut(s) 153, 168, 289, 396, 499, 540
DpnI GATC 5 cut(s) 98, 183, 324, 329, 436
DpnII GATC 5 cut(s) 96, 181, 322, 327, 434
Eam1104I CTCTTC 3 cut(s) 21, 236, 263
EarI CTCTTC 3 cut(s) 21, 236, 263
EcoT22I ATGCAT 2 cut(s) 451, 510
FaeI CATG 4 cut(s) 188, 442, 453, 512
FaiI YATR 9 cut(s) 186, 190, 440, 451, 506, 510, 520, 522, 574
FatI CATG 4 cut(s) 184, 438, 449, 508
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 86, 601
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 590
HgaI GACGC 1 cut(s) 61
Hin1II CATG 4 cut(s) 188, 442, 453, 512
HinfI GANTC 3 cut(s) 110, 317, 375
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 5 cut(s) 109, 322, 327, 481, 502
Hpy188III TCNNGA 1 cut(s) 334
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 2 cut(s) 331, 586
HpyCH4V TGCA 5 cut(s) 56, 442, 449, 508, 534
HpyF10VI GCNNNNNNNGC 1 cut(s) 514
HpyF3I CTNAG 6 cut(s) 153, 168, 289, 396, 499, 540
Hsp92II CATG 4 cut(s) 188, 442, 453, 512
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 5 cut(s) 96, 181, 322, 327, 434
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 2 cut(s) 385, 609
LpnPI CCDG 1 cut(s) 372
LweI GCATC 3 cut(s) 198, 436, 569
MalI GATC 5 cut(s) 98, 183, 324, 329, 436
MboI GATC 5 cut(s) 96, 181, 322, 327, 434
MboII GAAGA 6 cut(s) 8, 77, 217, 223, 250, 322
MflI RGATCY 2 cut(s) 327, 434
MhlI GDGCHC 2 cut(s) 33, 197
MluCI AATT 2 cut(s) 123, 474
MluI ACGCGT 1 cut(s) 70
Mph1103I ATGCAT 2 cut(s) 451, 510
MseI TTAA 1 cut(s) 473
MvnI CGCG 2 cut(s) 7, 72
MwoI GCNNNNNNNGC 1 cut(s) 514
NdeII GATC 5 cut(s) 96, 181, 322, 327, 434
NlaIII CATG 4 cut(s) 188, 442, 453, 512
NlaIV GGNNCC 2 cut(s) 194, 567
NsiI ATGCAT 2 cut(s) 451, 510
NspI RCATGY 2 cut(s) 453, 512
PciSI GCTCTTC 1 cut(s) 21
PfeI GAWTC 3 cut(s) 110, 317, 375
PkrI GCNGC 1 cut(s) 6
Ple19I CGATCG 1 cut(s) 325
PshBI ATTAAT 1 cut(s) 473
PspN4I GGNNCC 2 cut(s) 194, 567
PsuI RGATCY 2 cut(s) 327, 434
PvuI CGATCG 1 cut(s) 325
RsaI GTAC 2 cut(s) 497, 597
RsaNI GTAC 2 cut(s) 496, 596
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 5 cut(s) 96, 181, 322, 327, 434
SduI GDGCHC 2 cut(s) 33, 197
SfaNI GCATC 3 cut(s) 198, 436, 569
Sse9I AATT 2 cut(s) 123, 474
SsiI CCGC 1 cut(s) 5
TaqI TCGA 3 cut(s) 95, 315, 335
TasI AATT 2 cut(s) 123, 474
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 3 cut(s) 110, 317, 375
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TspDTI ATGAA 2 cut(s) 597, 605
TspGWI ACGGA 2 cut(s) 270, 287
VspI ATTAAT 1 cut(s) 473
XceI RCATGY 2 cut(s) 453, 512
XmiI GTMKAC 1 cut(s) 454
Zsp2I ATGCAT 2 cut(s) 451, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.