Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001637

Physical Location & Seq

Genomic Coordinates Forward (+)

35596559 .. 35602615

Gene Structure 6057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0310100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAAGAGGCAAAATCTCCACAAGTTAAGTGGTGCTTTGGTGCTGAAATTGGATGTGTTGATAATGTATGAGTTCTGCAACGATTTTGATTGCTTGGAATTGGATGTGTCCAGTTTGAATGATCTGCAATTGGATGTGTTGAGTTTGATATTTGATATTAATGACGATGGTGGCTGGGGACTACACATCGAAGGACTTGCAGGGCTTTGGTTCCAGTTTTCTGTGATGGGTAATGCTCGAGCCATTGGTGCGTTTCCGGTGCTTGTGTTAGTCCAGTTCTTTGTTATTGCAGCAGAGGCAAACACTCAGGAATATGGTTATATGCAGATTCTTATGGATGAGTGGAATATAAAACCTCCTAGTTGGGTGAGTGCCGATCCTTGTGACGGCTGGGAAGGTATTAAGTGCACCAATTCACGCAACACTGCCTTTGAGATGAGAATGGCTATAGTTCTTTTCAATGTTATTTTTCAAGGTTCTCGGTTTACAAACTTTGTGGGAATACTTAGCCAAGGACTAAGAATAGCTCCTCCTGAAGCTCCAGCTACTGGTTATATGTATATGGATAAACCTCCTAAGGGAAAGCACTTTACGAAGGGACTTGGCAAGAAAAAACCTGAGTCGGACTATGTTAAATGGAGAGATGATGTCACTGTGCCATGCGGCAAACCAGTGGATTCACATGTCAGGGCCTCTGAGCTGATGTATAATGAGTATATTGTTTATGATACAGCTCAAATTAAGTTTCACTCTCCTGAAGAGGAACTAGCCTTTGGTCCTCCTGCTTGTTGGTTATGGGACTATTTAAGAAGAAGTGGAGCTTCTGGGTTTCTGCTACCCCTTTCTGGTGGAGCAGATAGCTCGTCTGTGGCTGCCATAGTTGGCTGCATGTGTCAGCTTGTGGTAAAAGTAACTTGGTTTTACTGCAGCTCCGACTCGACAAAATCACGGGCAAAGGTTCTAGCAGATGAAATTGGCGCATGGCATCTTGATATCAGTATAGATGGTGTTATTTCTGCACTTCTGACGCTGTTTCAAGCAGTGACAGGAAAACGACCACGATATAAGATAGATGGAGGATCTAATGCTGAGAACTTAGGTTACAAATATGTCAAATGTTCTGTTTTCGGAGAAGGGATGCCTGATTTATGTGGTGTTAATAATGAAGTTCACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEARLI-4

Protein Analysis

392

Amino Acids

43.5

Weight (kDa)

5.25

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	155 - 187	8.5e-09	Poly(ADP-ribose) polymerase catalytic domain
PARP	PF00644	187 - 249	3.2e-15	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15940 AT1G80810 AT1G80810 AT1G80810 AT1G80810 AT1G80810
fragaria_vesca	FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720
malus_domestica	MD17G1222300.v1.1
prunus_persica	Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1
pyrus_communis	pycom05g32820 pycom06g06660 pycom09g14350 pycom10g28890 pycom16g06390 pycom17g22600 pycom17g22610 pycom17g22620
rosa_chinensis	RchiOBHm_Chr2g0133121
rosa_laevigata	RLG00000019309
rosa_multiflora	Rmu_sc0000127.1_g000007 Rmu_sc0008365.1_g000009
rosa_roxburghii	Rroxscaffold_2G00111400
rosa_rugosa	Rorug02G0309800 Rorug02G0309900 Rorug02G0310000 Rorug02G0310100 Rorug02G0310200 Rorug02G0310300 Rorug02G0310300
rosa_samantha	Rh2AG362200 Rh2BG367900 Rh2CG345500 Rh2DG385000
rosa_wichuraiana	Rw2G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	548
AciI	CCGC	1 cut(s)	663
AclWI	GGATC	2 cut(s)	371, 1087
AcuI	CTGAAG	2 cut(s)	555, 777
AfiI	CCNNNNNNNGG	4 cut(s)	386, 548, 578, 845
AflIII	ACRYGT	1 cut(s)	682
AgsI	TTSAA	4 cut(s)	118, 460, 473, 1037
AjuI	GAANNNNNNNTTGG	2 cut(s)	756, 788
AluBI	AGCT	9 cut(s)	527, 539, 545, 700, 734, 821, 861, 898, 930
AluI	AGCT	9 cut(s)	527, 539, 545, 700, 734, 821, 861, 898, 930
Alw21I	GWGCWC	1 cut(s)	410
Alw44I	GTGCAC	1 cut(s)	406
AlwI	GGATC	2 cut(s)	371, 1087
AlwNI	CAGNNNCTG	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	237
AoxI	GGCC	1 cut(s)	690
ApaLI	GTGCAC	1 cut(s)	406
ApeKI	GCWGC	4 cut(s)	290, 872, 885, 927
AseI	ATTAAT	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	980
AspS9I	GGNCC	2 cut(s)	690, 776
AsuHPI	GGTGA	2 cut(s)	379, 1163
AvaI	CYCGRG	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	776
AxyI	CCTNAGG	1 cut(s)	576
BaeGI	GKGCMC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	4 cut(s)	302, 859, 872, 939
BccI	CCATC	4 cut(s)	161, 220, 998, 1067
BceAI	ACGGC	1 cut(s)	403
BcgI	CGANNNNNNTGC	4 cut(s)	179, 213, 843, 877
BfaI	CTAG	3 cut(s)	360, 767, 962
BfmI	CTRYAG	2 cut(s)	447, 925
BisI	GCNGC	5 cut(s)	291, 664, 873, 886, 928
BlsI	GCNGC	5 cut(s)	292, 665, 874, 887, 929
Bme18I	GGWCC	1 cut(s)	776
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	2 cut(s)	690, 776
BmiI	GGNNCC	1 cut(s)	212
BmsI	GCATC	2 cut(s)	994, 1128
BpmI	CTGGAG	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	511
BsaWI	WCCGGW	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	914, 944
Bsc4I	CCNNNNNNNGG	4 cut(s)	386, 548, 578, 845
Bse1I	ACTGG	5 cut(s)	111, 214, 274, 553, 671
Bse21I	CCTNAGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	5 cut(s)	58, 109, 139, 343, 1143
BseLI	CCNNNNNNNGG	4 cut(s)	386, 548, 578, 845
BseMII	CTCAG	4 cut(s)	320, 609, 687, 1080
BseNI	ACTGG	5 cut(s)	111, 214, 274, 553, 671
BseRI	GAGGAG	1 cut(s)	519
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	4 cut(s)	302, 859, 872, 939
BseYI	CCCAGC	2 cut(s)	174, 390
BsgI	GTGCAG	1 cut(s)	1002
BshFI	GGCC	1 cut(s)	692
BsiHKAI	GWGCWC	1 cut(s)	410
BsiHKCI	CYCGRG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	3 cut(s)	192, 612, 812
BslI	CCNNNNNNNGG	4 cut(s)	386, 548, 578, 845
BsmFI	GGGAC	3 cut(s)	192, 612, 812
BsnI	GGCC	1 cut(s)	692
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	3 cut(s)	121, 376, 1079
BspACI	CCGC	1 cut(s)	663
BspANI	GGCC	1 cut(s)	692
BspCNI	CTCAG	4 cut(s)	319, 610, 688, 1081
BspLI	GGNNCC	1 cut(s)	212
BspMAI	CTGCAG	1 cut(s)	929
BspPI	GGATC	2 cut(s)	371, 1087
BsrI	ACTGG	5 cut(s)	111, 214, 274, 553, 671
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	3 cut(s)	121, 376, 1079
BssT1I	CCWWGG	1 cut(s)	511
Bst4CI	ACNGT	1 cut(s)	655
Bst6I	CTCTTC	1 cut(s)	753
BstDEI	CTNAG	8 cut(s)	306, 506, 518, 576, 618, 696, 1089, 1096
BstF5I	GGATG	5 cut(s)	58, 109, 139, 343, 1143
BstHHI	GCGC	1 cut(s)	980
BstKTI	GATC	3 cut(s)	124, 379, 1082
BstMBI	GATC	3 cut(s)	121, 376, 1079
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 296
BstNSI	RCATGY	2 cut(s)	686, 892
BstSFI	CTRYAG	2 cut(s)	447, 925
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	4 cut(s)	302, 859, 872, 939
BstX2I	RGATCY	1 cut(s)	1079
BstYI	RGATCY	1 cut(s)	1079
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	1 cut(s)	692
BtsCI	GGATG	5 cut(s)	58, 109, 139, 343, 1143
BtsI	GCAGTG	2 cut(s)	423, 1047
BtsIMutI	CAGTG	4 cut(s)	423, 651, 678, 1047
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	1 cut(s)	980
Cfr13I	GGNCC	2 cut(s)	690, 776
CseI	GACGC	1 cut(s)	1036
CspCI	CAANNNNNGTGG	4 cut(s)	10, 45, 477, 512
CviAII	CATG	4 cut(s)	660, 683, 889, 981
DdeI	CTNAG	8 cut(s)	306, 506, 518, 576, 618, 696, 1089, 1096
DpnI	GATC	3 cut(s)	123, 378, 1081
DpnII	GATC	3 cut(s)	121, 376, 1079
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
Eco130I	CCWWGG	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	994
Eco47I	GGWCC	1 cut(s)	776
Eco57I	CTGAAG	2 cut(s)	555, 777
Eco81I	CCTNAGG	1 cut(s)	576
Eco88I	CYCGRG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	690
EcoRV	GATATC	1 cut(s)	994
EcoT14I	CCWWGG	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	4 cut(s)	663, 686, 892, 984
FalI	AAGNNNNNCTT	5 cut(s)	19, 51, 805, 837, 1158
FaqI	GGGAC	3 cut(s)	192, 612, 812
FatI	CATG	4 cut(s)	659, 682, 888, 980
Fnu4HI	GCNGC	5 cut(s)	291, 664, 873, 886, 928
FokI	GGATG	5 cut(s)	65, 116, 146, 350, 1150
Fsp4HI	GCNGC	5 cut(s)	291, 664, 873, 886, 928
FspBI	CTAG	3 cut(s)	360, 767, 962
GlaI	GCGC	1 cut(s)	979
GluI	GCNGC	5 cut(s)	291, 664, 873, 886, 928
GsaI	CCCAGC	2 cut(s)	178, 394
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	692
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	1036
HhaI	GCGC	1 cut(s)	980
Hin1II	CATG	4 cut(s)	663, 686, 892, 984
Hin6I	GCGC	1 cut(s)	978
HinP1I	GCGC	1 cut(s)	978
HinfI	GANTC	4 cut(s)	328, 620, 677, 935
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	2 cut(s)	379, 1163
Hpy166II	GTNNAC	3 cut(s)	408, 486, 1171
Hpy188I	TCNGA	5 cut(s)	625, 697, 934, 1026, 1130
Hpy188III	TCNNGA	4 cut(s)	308, 533, 755, 989
Hpy8I	GTNNAC	3 cut(s)	408, 486, 1171
HpyAV	CCTTC	4 cut(s)	185, 389, 589, 1127
HpyCH4III	ACNGT	1 cut(s)	655
HpyCH4V	TGCA	9 cut(s)	78, 127, 200, 290, 325, 408, 888, 927, 1019
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 296
HpyF3I	CTNAG	8 cut(s)	306, 506, 518, 576, 618, 696, 1089, 1096
Hsp92II	CATG	4 cut(s)	663, 686, 892, 984
HspAI	GCGC	1 cut(s)	978
Kzo9I	GATC	3 cut(s)	121, 376, 1079
LmnI	GCTCC	5 cut(s)	532, 544, 818, 851, 935
Lsp1109I	GCAGC	4 cut(s)	302, 859, 872, 939
LweI	GCATC	2 cut(s)	994, 1128
MaeI	CTAG	3 cut(s)	360, 767, 962
MaeIII	GTNAC	5 cut(s)	383, 649, 910, 1042, 1100
MalI	GATC	3 cut(s)	123, 378, 1081
MboI	GATC	3 cut(s)	121, 376, 1079
MboII	GAAGA	3 cut(s)	16, 770, 822
MfeI	CAATTG	1 cut(s)	128
MflI	RGATCY	1 cut(s)	1079
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	6 cut(s)	47, 98, 128, 412, 738, 972
MlyI	GAGTC	2 cut(s)	629, 929
MmeI	TCCRAC	2 cut(s)	603, 957
MnlI	CCTC	8 cut(s)	289, 366, 540, 582, 703, 754, 789, 1070
MseI	TTAA	8 cut(s)	26, 159, 402, 633, 741, 806, 1158, 1177
MspI	CCGG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	248, 296
NdeII	GATC	3 cut(s)	121, 376, 1079
NlaIII	CATG	4 cut(s)	663, 686, 892, 984
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	3 cut(s)	383, 649, 1042
NspI	RCATGY	2 cut(s)	686, 892
PaeR7I	CTCGAG	1 cut(s)	237
PciI	ACATGT	1 cut(s)	682
PfeI	GAWTC	2 cut(s)	328, 677
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	5 cut(s)	292, 665, 874, 887, 929
PleI	GAGTC	2 cut(s)	628, 929
PpsI	GAGTC	2 cut(s)	628, 929
PscI	ACATGT	1 cut(s)	682
PshBI	ATTAAT	1 cut(s)	159
PspFI	CCCAGC	2 cut(s)	174, 390
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	2 cut(s)	690, 776
PspXI	VCTCGAGB	1 cut(s)	237
PsrI	GAACNNNNNNTAC	2 cut(s)	1085, 1117
PstI	CTGCAG	1 cut(s)	929
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	1079
SaqAI	TTAA	8 cut(s)	26, 159, 402, 633, 741, 806, 1158, 1177
SatI	GCNGC	5 cut(s)	291, 664, 873, 886, 928
Sau3AI	GATC	3 cut(s)	121, 376, 1079
Sau96I	GGNCC	2 cut(s)	690, 776
SchI	GAGTC	2 cut(s)	629, 929
SduI	GDGCHC	1 cut(s)	410
SfaNI	GCATC	2 cut(s)	994, 1128
SfcI	CTRYAG	2 cut(s)	447, 925
Sfr274I	CTCGAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	776
SlaI	CTCGAG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	6 cut(s)	47, 98, 128, 412, 738, 972
SsiI	CCGC	1 cut(s)	663
SspMI	CTAG	3 cut(s)	360, 767, 962
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	655
TaqI	TCGA	3 cut(s)	189, 238, 938
TasI	AATT	6 cut(s)	47, 98, 128, 412, 738, 972
TauI	GCSGC	1 cut(s)	666
TfiI	GAWTC	2 cut(s)	328, 677
Tru1I	TTAA	8 cut(s)	26, 159, 402, 633, 741, 806, 1158, 1177
Tru9I	TTAA	8 cut(s)	26, 159, 402, 633, 741, 806, 1158, 1177
TscAI	CASTG	4 cut(s)	430, 658, 678, 1047
TseFI	GTSAC	3 cut(s)	383, 649, 1042
TseI	GCWGC	4 cut(s)	290, 872, 885, 927
Tsp45I	GTSAC	3 cut(s)	383, 649, 1042
TspDTI	ATGAA	3 cut(s)	17, 984, 1179
TspRI	CASTG	4 cut(s)	430, 658, 678, 1047
Van91I	CCANNNNNTGG	1 cut(s)	548
VneI	GTGCAC	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	776
VspI	ATTAAT	1 cut(s)	159
XceI	RCATGY	2 cut(s)	686, 892
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XhoI	CTCGAG	1 cut(s)	237
XspI	CTAG	3 cut(s)	360, 767, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.