Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001637

Physical Location & Seq

Genomic Coordinates Forward (+)

20997134 .. 21001541

Gene Structure 4408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCTAAAAAAGCGGTATCAAAATCATTTCTCTTATTTTAGGCCAGCGTTCGAGAACGAAAGCGCCAATGTGCACAAAAGATGGGATTTTGATGGCGTGCGAGGCATAACCGAAAAAACCCAGTACACTAACTGGAGAGAGAGAGAGAGAGTAGCGTGCCCAACGCCCGGGCTTAAATCCCTAAAACTTGGCTGCTTTGTTTTCTGGGTGGTTGTTGAAATGTCTTGTTCCTCTGAGAAAGAGCTGGAGGAGCAGCTCAAGGAGGCTGGAAATATTCTCCTCAACCCTCCTTCGGCTACCGAGGAGCTTCTCAAATTCCTTGGTGAAGCTGAGGGTTTGTTGTCAAATGTTGAGCAAGCACCACACAGGTCCATGCAAGATGCACTCCTACCGATAATGAAGGCATTAATTTCTGATGAGCTGTTTAGGCACTCAGATATGGATGTGAAGCTATATGTTGCTTCTTGCATTACTGAGCTTACGAGAATAACAGCACCGGTTCCTCCATACAATGATGAATGGATGAAGGAAATCTTTCAGCTGACTGTAGCAGCTTTTGAGAAACTGTCGTATGTTTCCAGTCCCTTTTATAGAAAGGCAGTTTCCATTCTTCATATTGTGGCAAAGGTCAGGTCAAGCTTGCTGATGCTGGACCTTGGTTGCAGTGCATTAATTCTTAAGATGTTTCAACATTTCCTTAAATTAACCCATAGGGTCCAATCATCCACATTCTGTATTTTCAGCCATGGAAACTATTATGACCATGGTTTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEARLI-4

Protein Analysis

259

Amino Acids

29.78

Weight (kDa)

7.66

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15940 AT1G80810 AT1G80810 AT1G80810 AT1G80810 AT1G80810
fragaria_vesca	FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720 FvH4_6g28720
malus_domestica	MD17G1222300.v1.1
prunus_persica	Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1 Prupe.3G097300_v2.0.a1
pyrus_communis	pycom05g32820 pycom06g06660 pycom09g14350 pycom10g28890 pycom16g06390 pycom17g22600 pycom17g22610 pycom17g22620
rosa_chinensis	RchiOBHm_Chr2g0133121
rosa_laevigata	RLG00000019309
rosa_multiflora	Rmu_sc0000127.1_g000007 Rmu_sc0008365.1_g000009
rosa_roxburghii	Rroxscaffold_2G00111400
rosa_rugosa	Rorug02G0309800 Rorug02G0309900 Rorug02G0310000 Rorug02G0310100 Rorug02G0310200 Rorug02G0310300 Rorug02G0310300
rosa_samantha	Rh2AG362200 Rh2BG367900 Rh2CG345500 Rh2DG385000
rosa_wichuraiana	Rw2G029460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	167, 292
AflII	CTTAAG	1 cut(s)	677
AgeI	ACCGGT	1 cut(s)	496
AgsI	TTSAA	2 cut(s)	218, 689
Alw21I	GWGCWC	1 cut(s)	75
Alw44I	GTGCAC	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	41
ApaLI	GTGCAC	1 cut(s)	71
ApeKI	GCWGC	3 cut(s)	192, 253, 551
ApoI	RAATTY	1 cut(s)	314
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
AseI	ATTAAT	2 cut(s)	407, 671
AsiGI	ACCGGT	1 cut(s)	496
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	3 cut(s)	369, 652, 715
AsuC2I	CCSGG	2 cut(s)	168, 169
AsuHPI	GGTGA	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	3 cut(s)	369, 652, 715
BaeGI	GKGCMC	2 cut(s)	75, 161
Bbv12I	GWGCWC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	179, 265, 563
BccI	CCATC	2 cut(s)	75, 86
BcnI	CCSGG	2 cut(s)	168, 169
BfmI	CTRYAG	1 cut(s)	546
BfoI	RGCGCY	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	677
BisI	GCNGC	3 cut(s)	193, 254, 552
BlsI	GCNGC	3 cut(s)	194, 255, 553
Bme1390I	CCNGG	2 cut(s)	168, 169
Bme18I	GGWCC	3 cut(s)	369, 652, 715
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	3 cut(s)	369, 652, 715
BmiI	GGNNCC	2 cut(s)	501, 716
BmrFI	CCNGG	2 cut(s)	168, 169
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	370, 636
BmuI	ACTGGG	1 cut(s)	115
BpmI	CTGGAG	2 cut(s)	154, 266
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	168, 169
BsaJI	CCNNGG	6 cut(s)	167, 300, 319, 655, 745, 763
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 292
Bse118I	RCCGGY	1 cut(s)	496
Bse1I	ACTGG	3 cut(s)	121, 137, 579
BseDI	CCNNGG	6 cut(s)	167, 300, 319, 655, 745, 763
BseGI	GGATG	3 cut(s)	448, 528, 722
BseLI	CCNNNNNNNGG	2 cut(s)	167, 292
BseMII	CTCAG	4 cut(s)	225, 321, 447, 465
BseNI	ACTGG	3 cut(s)	121, 137, 579
BseRI	GAGGAG	3 cut(s)	263, 269, 317
BseSI	GKGCMC	2 cut(s)	75, 161
BseXI	GCAGC	3 cut(s)	179, 265, 563
BshFI	GGCC	1 cut(s)	43
BshTI	ACCGGT	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	168, 497
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	2 cut(s)	167, 292
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	1 cut(s)	43
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	75, 161
Bsp19I	CCATGG	2 cut(s)	745, 763
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	4 cut(s)	226, 322, 446, 466
BspLI	GGNNCC	2 cut(s)	501, 716
BspTI	CTTAAG	1 cut(s)	677
BsrFI	RCCGGY	1 cut(s)	496
BsrI	ACTGG	3 cut(s)	121, 137, 579
BssAI	RCCGGY	1 cut(s)	496
BssECI	CCNNGG	6 cut(s)	167, 300, 319, 655, 745, 763
BssT1I	CCWWGG	4 cut(s)	319, 655, 745, 763
Bst4CI	ACNGT	2 cut(s)	547, 567
BstAFI	CTTAAG	1 cut(s)	677
BstC8I	GCNNGC	5 cut(s)	45, 98, 157, 357, 641
BstDEI	CTNAG	4 cut(s)	234, 330, 433, 474
BstDSI	CCRYGG	2 cut(s)	745, 763
BstF5I	GGATG	3 cut(s)	448, 528, 722
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 102, 250, 427
BstSCI	CCNGG	2 cut(s)	166, 167
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	2 cut(s)	75, 161
BstV1I	GCAGC	3 cut(s)	179, 265, 563
BsuRI	GGCC	1 cut(s)	43
BtgI	CCRYGG	2 cut(s)	745, 763
BtsCI	GGATG	3 cut(s)	448, 528, 722
BtsI	GCAGTG	1 cut(s)	670
BtsIMutI	CAGTG	1 cut(s)	670
Cac8I	GCNNGC	5 cut(s)	45, 98, 157, 357, 641
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	496
Cfr13I	GGNCC	3 cut(s)	369, 652, 715
Cfr9I	CCCGGG	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	124
CspAI	ACCGGT	1 cut(s)	496
CviAII	CATG	3 cut(s)	373, 746, 764
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	4 cut(s)	234, 330, 433, 474
Eco130I	CCWWGG	4 cut(s)	319, 655, 745, 763
Eco47I	GGWCC	3 cut(s)	369, 652, 715
Eco88I	CYCGRG	1 cut(s)	167
EcoT14I	CCWWGG	4 cut(s)	319, 655, 745, 763
ErhI	CCWWGG	4 cut(s)	319, 655, 745, 763
FaeI	CATG	3 cut(s)	376, 749, 767
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	3 cut(s)	372, 745, 763
Fnu4HI	GCNGC	3 cut(s)	193, 254, 552
FokI	GGATG	3 cut(s)	455, 535, 709
Fsp4HI	GCNGC	3 cut(s)	193, 254, 552
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	3 cut(s)	193, 254, 552
GsuI	CTGGAG	2 cut(s)	154, 266
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	2 cut(s)	168, 497
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	376, 749, 767
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	637
HpaII	CCGG	2 cut(s)	168, 497
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	73, 126
Hpy188I	TCNGA	3 cut(s)	235, 415, 436
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	73, 126
HpyAV	CCTTC	3 cut(s)	300, 394, 520
HpyCH4III	ACNGT	2 cut(s)	547, 567
HpyCH4V	TGCA	6 cut(s)	73, 376, 383, 468, 663, 668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 102, 250, 427
HpyF3I	CTNAG	4 cut(s)	234, 330, 433, 474
Hsp92II	CATG	3 cut(s)	376, 749, 767
HspAI	GCGC	1 cut(s)	63
LmnI	GCTCC	2 cut(s)	250, 304
Lsp1109I	GCAGC	3 cut(s)	179, 265, 563
LweI	GCATC	2 cut(s)	370, 636
MboII	GAAGA	1 cut(s)	602
MhlI	GDGCHC	2 cut(s)	75, 161
MluCI	AATT	4 cut(s)	314, 408, 672, 701
MnlI	CCTC	9 cut(s)	95, 241, 241, 256, 290, 295, 297, 325, 513
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	6 cut(s)	174, 407, 671, 678, 699, 704
MspA1I	CMGCKG	1 cut(s)	541
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	2 cut(s)	168, 497
MspR9I	CCNGG	2 cut(s)	168, 169
MwoI	GCNNNNNNNGC	4 cut(s)	10, 102, 250, 427
NciI	CCSGG	2 cut(s)	168, 169
NcoI	CCATGG	2 cut(s)	745, 763
NlaIII	CATG	3 cut(s)	376, 749, 767
NlaIV	GGNNCC	2 cut(s)	501, 716
PdmI	GAANNNNTTC	1 cut(s)	534
PinAI	ACCGGT	1 cut(s)	496
PkrI	GCNGC	3 cut(s)	194, 255, 553
PshBI	ATTAAT	2 cut(s)	407, 671
PspN4I	GGNNCC	2 cut(s)	501, 716
PspPI	GGNCC	3 cut(s)	369, 652, 715
PvuII	CAGCTG	1 cut(s)	541
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	6 cut(s)	174, 407, 671, 678, 699, 704
SatI	GCNGC	3 cut(s)	193, 254, 552
Sau96I	GGNCC	3 cut(s)	369, 652, 715
ScrFI	CCNGG	2 cut(s)	168, 169
SduI	GDGCHC	2 cut(s)	75, 161
SfaNI	GCATC	2 cut(s)	370, 636
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	3 cut(s)	369, 652, 715
SmaI	CCCGGG	1 cut(s)	169
SmlI	CTYRAG	2 cut(s)	257, 677
SmoI	CTYRAG	2 cut(s)	257, 677
SrfI	GCCCGGGC	1 cut(s)	169
Sse9I	AATT	4 cut(s)	314, 408, 672, 701
SsiI	CCGC	1 cut(s)	13
SspI	AATATT	1 cut(s)	274
StyD4I	CCNGG	2 cut(s)	166, 167
StyI	CCWWGG	4 cut(s)	319, 655, 745, 763
TaaI	ACNGT	2 cut(s)	547, 567
TaqI	TCGA	1 cut(s)	51
TasI	AATT	4 cut(s)	314, 408, 672, 701
TatI	WGTACW	1 cut(s)	123
Tru1I	TTAA	6 cut(s)	174, 407, 671, 678, 699, 704
Tru9I	TTAA	6 cut(s)	174, 407, 671, 678, 699, 704
TscAI	CASTG	1 cut(s)	670
TseI	GCWGC	3 cut(s)	192, 253, 551
TspDTI	ATGAA	4 cut(s)	413, 531, 539, 602
TspMI	CCCGGG	1 cut(s)	167
TspRI	CASTG	1 cut(s)	670
Vha464I	CTTAAG	1 cut(s)	677
VneI	GTGCAC	1 cut(s)	71
VpaK11BI	GGWCC	3 cut(s)	369, 652, 715
VspI	ATTAAT	2 cut(s)	407, 671
XapI	RAATTY	1 cut(s)	314
XmaI	CCCGGG	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.