FvH4_6g44510

Anthocyanin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005947
Physical Location & Seq
Forward (+)
34286125 .. 34287534
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44510.t1

Sequence Viewer

Length: 1410 bp
ATGAACGGTTCCTGCAGCCCAGTGAAGGTTATTGAGCAATGTCAGATTTCTCCACCACCAGGCTCAGTTCCTACCACCACTCTCCCCCTCACATTCTTTGACATTGTATTCCTCTTCCCTCCTCCCAACGAAAGTGTCTTCTCCTTCGACTTCCCTCAGCCTCTTCACCAATTCACCCAAACCATCCTCCCCAAGCTCAAACACTCCCTTTCTCGCACTCTCCAACACTTCTTTCCCTTGGCCTCAAATCTCATATGCCCTCCACCACCCTCCAAGCCTTATCTACAATACACCGCGGGCGCCTCACTGACATTGACAATTGCCGAGTCCTCAGGTGATTTCAACCGCCTCACGTCCCACCTTGTAGAAGATGTTGAAGAATCTCACCTCCTCATTCCGCCGCTGCCGCCTTCGAGTGTGTTAGAGGACGGCACACGTGTGGTACCTCTTCTGGCTGTACAGATCACTGTGTTCCCAAACTCTGGGATTTGCATTGGTACCAACTGTGATCATGTATTGGCTGATGAGAGTTCATTTCATCATTTCTTGAAGTTCTGGGCCTCTGTATGTAGATCAGGAGGAGGAGACATTAAAATAGAGTCCTTACCATCTCATAACAGGGGTTTGATCAAAGACCCGTGTGACCTAAAGAACAAGTTCGTAGATGATTGGAGAAGCTGGACTAGTACTCCTACCAAATGTGAGCAGTTGAGAACCCAATTCCTCATTGGAAAAGTTCGAACCACATTTGTGTTCAGCAAAGCCCAAATTGATAGATTGAAACTCTGGGTCTCCAACTTGTTCATCAAACTTCAAGATTCTAAGCCAACACATTTGTCATCTTTTGTGGTCATATGCGCTTTTACATGGGTTTCTATGGTGAAAGCAGAGGAGATCAGTGATGACGAAATGCAATGCCACTTCAATTACGCAGCGAATTGCCGCGACCGCCTTGGATATCCATTGCCGGGATCATACTTTGGGAACTGTTTGTCCCTTCGTTCAGCGCAAGCGAAGGAGAGTGATCTTGTGGGAGAAAATGGGATCGTTGCGGCTGTGAACGCCATAGGAAACAATGTGAAGGATTTGGAGAACGGGGTATTGAGAAATGCAGAGGATTGGACTGCAGGTTGGGTCAAGGGAGCTACTAGGAAAAAAAGTATTCCTAGACATTTTACCACCCTTGCTGGGTCGCCAAGATTTGATTTTTACAATGAACTTGATTTTGGTTGGGGGAGACCCAAAAAGTGTGAGGTGATTAACGTTGATTTTGACAGATGTATCTACGTGAGTAATAGTAGAGAGGAGGAAGGAGGGATTGAGATTCTGTTGGCGCTTAAAAGGGAGCAAATGGATTCCTTCTGTTCCATGTTCAAACAAGCTTTGAAACTTGCGGAGGTGGAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747 GO:0033809
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

470

Amino Acids

52.4

Weight (kDa)

6.2

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 9 - 458 7e-49 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1118
Acc65I GGTACC 2 cut(s) 442, 497
AccB1I GGYRCC 3 cut(s) 299, 442, 497
AccB7I CCANNNNNTGG 1 cut(s) 482
AccII CGCG 2 cut(s) 296, 945
AclI AACGTT 1 cut(s) 1263
AclWI GGATC 2 cut(s) 979, 1052
AcvI CACGTG 1 cut(s) 437
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 4 cut(s) 444, 459, 499, 688
AfiI CCNNNNNNNGG 5 cut(s) 25, 59, 482, 968, 1188
AflIII ACRYGT 2 cut(s) 434, 436
AgsI TTSAA 8 cut(s) 343, 377, 550, 781, 815, 925, 1375, 1387
AhlI ACTAGT 1 cut(s) 683
AjiI CACGTC 1 cut(s) 354
AjnI CCWGG 1 cut(s) 58
AjuI GAANNNNNNNTTGG 4 cut(s) 216, 248, 1209, 1241
AleI CACNNNNGTG 2 cut(s) 437, 749
AloI GAACNNNNNNTCC 2 cut(s) 977, 1009
AluBI AGCT 4 cut(s) 196, 678, 1145, 1382
AluI AGCT 4 cut(s) 196, 678, 1145, 1382
Alw26I GTCTC 3 cut(s) 579, 796, 1231
AlwI GGATC 2 cut(s) 979, 1052
AoxI GGCC 2 cut(s) 240, 558
ApeKI GCWGC 3 cut(s) 15, 403, 932
Asp700I GAANNNNTTC 1 cut(s) 656
Asp718I GGTACC 2 cut(s) 442, 497
AspLEI GCGC 4 cut(s) 302, 860, 1009, 1336
AspS9I GGNCC 1 cut(s) 558
AsuC2I CCSGG 1 cut(s) 969
AsuHPI GGTGA 6 cut(s) 158, 166, 347, 377, 892, 1267
AsuII TTCGAA 1 cut(s) 739
AxyI CCTNAGG 1 cut(s) 331
BaeI ACNNNNGTAYC 2 cut(s) 1264, 1297
BanI GGYRCC 3 cut(s) 299, 442, 497
BbrPI CACGTG 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 130
BbvCI CCTCAGC 1 cut(s) 156
BbvI GCAGC 3 cut(s) 27, 390, 944
BccI CCATC 2 cut(s) 191, 616
BceAI ACGGC 1 cut(s) 445
BciT130I CCWGG 1 cut(s) 60
BclI TGATCA 2 cut(s) 508, 627
BcnI CCSGG 1 cut(s) 969
BcoDI GTCTC 3 cut(s) 579, 796, 1231
BcuI ACTAGT 1 cut(s) 683
BfaI CTAG 3 cut(s) 684, 1149, 1167
BfmI CTRYAG 2 cut(s) 13, 1125
BfoI RGCGCY 2 cut(s) 303, 1337
BfuAI ACCTGC 1 cut(s) 1118
BisI GCNGC 7 cut(s) 16, 401, 404, 407, 933, 943, 1053
BlsI GCNGC 7 cut(s) 17, 402, 405, 408, 934, 944, 1054
BmcAI AGTACT 1 cut(s) 688
Bme1390I CCNGG 2 cut(s) 60, 969
BmgBI CACGTC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 558
BmiI GGNNCC 4 cut(s) 10, 301, 444, 499
BmrFI CCNGG 2 cut(s) 60, 969
BmrI ACTGGG 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 739
BpuMI CCSGG 1 cut(s) 969
BsaAI YACGTR 2 cut(s) 437, 1288
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 2 cut(s) 796, 1231
BsaJI CCNNGG 3 cut(s) 237, 294, 952
BsaXI ACNNNNNCTCC 2 cut(s) 673, 703
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 59, 482, 968, 1188
Bse1I ACTGG 1 cut(s) 20
Bse21I CCTNAGG 1 cut(s) 331
Bse3DI GCAATG 3 cut(s) 44, 920, 962
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 3 cut(s) 237, 294, 952
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 5 cut(s) 25, 59, 482, 968, 1188
BseMI GCAATG 3 cut(s) 44, 920, 962
BseMII CTCAG 3 cut(s) 78, 170, 345
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 6 cut(s) 111, 380, 594, 597, 905, 1319
BseXI GCAGC 3 cut(s) 27, 390, 944
BseYI CCCAGC 1 cut(s) 1187
Bsh1236I CGCG 2 cut(s) 296, 945
Bsh1285I CGRYCG 1 cut(s) 949
BshFI GGCC 2 cut(s) 242, 560
BshNI GGYRCC 3 cut(s) 299, 442, 497
BsiEI CGRYCG 1 cut(s) 949
BsiSI CCGG 1 cut(s) 968
BslFI GGGAC 2 cut(s) 340, 979
BslI CCNNNNNNNGG 5 cut(s) 25, 59, 482, 968, 1188
BsmAI GTCTC 3 cut(s) 579, 796, 1231
BsmFI GGGAC 2 cut(s) 340, 979
BsnI GGCC 2 cut(s) 242, 560
Bso31I GGTCTC 2 cut(s) 796, 1231
Bsp119I TTCGAA 1 cut(s) 739
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 8 cut(s) 462, 508, 572, 627, 894, 971, 1024, 1044
BspANI GGCC 2 cut(s) 242, 560
BspCNI CTCAG 3 cut(s) 77, 169, 344
BspFNI CGCG 2 cut(s) 296, 945
BspLI GGNNCC 4 cut(s) 10, 301, 444, 499
BspMAI CTGCAG 2 cut(s) 17, 1129
BspMI ACCTGC 1 cut(s) 1118
BspPI GGATC 2 cut(s) 979, 1052
BspT104I TTCGAA 1 cut(s) 739
BspT107I GGYRCC 3 cut(s) 299, 442, 497
BspTNI GGTCTC 2 cut(s) 796, 1231
BsrDI GCAATG 3 cut(s) 44, 920, 962
BsrGI TGTACA 1 cut(s) 457
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 237, 294, 952
BssMI GATC 8 cut(s) 462, 508, 572, 627, 894, 971, 1024, 1044
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 2 cut(s) 237, 952
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 5 cut(s) 8, 469, 506, 989, 1407
Bst6I CTCTTC 3 cut(s) 119, 168, 453
BstACI GRCGYC 1 cut(s) 300
BstAUI TGTACA 1 cut(s) 457
BstBAI YACGTR 2 cut(s) 437, 1288
BstBI TTCGAA 1 cut(s) 739
BstC8I GCNNGC 2 cut(s) 298, 1011
BstDEI CTNAG 4 cut(s) 64, 156, 331, 822
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 2 cut(s) 296, 945
BstH2I RGCGCY 2 cut(s) 303, 1337
BstHHI GCGC 4 cut(s) 302, 860, 1009, 1336
BstKTI GATC 8 cut(s) 465, 511, 575, 630, 897, 974, 1027, 1047
BstMAI GTCTC 3 cut(s) 579, 796, 1231
BstMBI GATC 8 cut(s) 462, 508, 572, 627, 894, 971, 1024, 1044
BstMCI CGRYCG 1 cut(s) 949
BstMWI GCNNNNNNNGC 3 cut(s) 406, 948, 1061
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 2 cut(s) 58, 967
BstSFI CTRYAG 2 cut(s) 13, 1125
BstUI CGCG 2 cut(s) 296, 945
BstV1I GCAGC 3 cut(s) 27, 390, 944
BstV2I GAAGAC 1 cut(s) 130
Bsu36I CCTNAGG 1 cut(s) 331
BsuRI GGCC 2 cut(s) 242, 560
BtgI CCRYGG 1 cut(s) 294
BtrI CACGTC 1 cut(s) 354
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 4 cut(s) 27, 305, 465, 904
BveI ACCTGC 1 cut(s) 1118
Cac8I GCNNGC 2 cut(s) 298, 1011
CfoI GCGC 4 cut(s) 302, 860, 1009, 1336
Cfr13I GGNCC 1 cut(s) 558
Cfr42I CCGCGG 1 cut(s) 297
Csp6I GTAC 4 cut(s) 443, 458, 498, 687
CviAII CATG 3 cut(s) 512, 867, 1369
CviQI GTAC 4 cut(s) 443, 458, 498, 687
DdeI CTNAG 4 cut(s) 64, 156, 331, 822
DinI GGCGCC 1 cut(s) 301
DpnI GATC 8 cut(s) 464, 510, 574, 629, 896, 973, 1026, 1046
DpnII GATC 8 cut(s) 462, 508, 572, 627, 894, 971, 1024, 1044
Eam1104I CTCTTC 3 cut(s) 119, 168, 453
EarI CTCTTC 3 cut(s) 119, 168, 453
EciI GGCGGA 1 cut(s) 387
Eco130I CCWWGG 2 cut(s) 237, 952
Eco31I GGTCTC 2 cut(s) 796, 1231
Eco32I GATATC 1 cut(s) 959
Eco72I CACGTG 1 cut(s) 437
Eco81I CCTNAGG 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 58
EcoRV GATATC 1 cut(s) 959
EcoT14I CCWWGG 2 cut(s) 237, 952
EgeI GGCGCC 1 cut(s) 301
EheI GGCGCC 1 cut(s) 301
ErhI CCWWGG 2 cut(s) 237, 952
FaeI CATG 3 cut(s) 515, 870, 1372
FaqI GGGAC 2 cut(s) 340, 979
FatI CATG 3 cut(s) 511, 866, 1368
FauI CCCGC 1 cut(s) 289
FauNDI CATATG 2 cut(s) 254, 854
FbaI TGATCA 2 cut(s) 508, 627
Fnu4HI GCNGC 7 cut(s) 16, 401, 404, 407, 933, 943, 1053
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 7 cut(s) 16, 401, 404, 407, 933, 943, 1053
FspBI CTAG 3 cut(s) 684, 1149, 1167
GlaI GCGC 4 cut(s) 301, 859, 1008, 1335
GluI GCNGC 7 cut(s) 16, 401, 404, 407, 933, 943, 1053
GsaI CCCAGC 1 cut(s) 1191
HaeII RGCGCY 2 cut(s) 303, 1337
HaeIII GGCC 2 cut(s) 242, 560
HapII CCGG 1 cut(s) 968
HhaI GCGC 4 cut(s) 302, 860, 1009, 1336
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 3 cut(s) 515, 870, 1372
Hin6I GCGC 4 cut(s) 300, 858, 1007, 1334
HinP1I GCGC 4 cut(s) 300, 858, 1007, 1334
HindIII AAGCTT 1 cut(s) 1380
HinfI GANTC 6 cut(s) 326, 380, 599, 818, 1324, 1355
HpaII CCGG 1 cut(s) 968
HphI GGTGA 6 cut(s) 158, 166, 347, 377, 892, 1267
Hpy166II GTNNAC 1 cut(s) 1060
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 547, 576, 815
Hpy8I GTNNAC 1 cut(s) 1060
HpyAV CCTTC 8 cut(s) 19, 154, 420, 1007, 1009, 1075, 1304, 1369
HpyCH4III ACNGT 5 cut(s) 8, 469, 506, 989, 1407
HpyCH4IV ACGT 4 cut(s) 353, 436, 1263, 1287
HpyCH4V TGCA 5 cut(s) 15, 492, 913, 1112, 1127
HpyF10VI GCNNNNNNNGC 3 cut(s) 406, 948, 1061
HpyF3I CTNAG 4 cut(s) 64, 156, 331, 822
HpySE526I ACGT 4 cut(s) 353, 436, 1263, 1287
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 3 cut(s) 515, 870, 1372
HspAI GCGC 4 cut(s) 300, 858, 1007, 1334
KasI GGCGCC 1 cut(s) 299
KpnI GGTACC 2 cut(s) 446, 501
Ksp22I TGATCA 2 cut(s) 508, 627
KspI CCGCGG 1 cut(s) 297
Kzo9I GATC 8 cut(s) 462, 508, 572, 627, 894, 971, 1024, 1044
LmnI GCTCC 2 cut(s) 1142, 1345
Lsp1109I GCAGC 3 cut(s) 27, 390, 944
MaeI CTAG 3 cut(s) 684, 1149, 1167
MaeII ACGT 4 cut(s) 353, 436, 1263, 1287
MaeIII GTNAC 1 cut(s) 641
MalI GATC 8 cut(s) 464, 510, 574, 629, 896, 973, 1026, 1046
MboI GATC 8 cut(s) 462, 508, 572, 627, 894, 971, 1024, 1044
MboII GAAGA 6 cut(s) 106, 130, 155, 380, 389, 440
MfeI CAATTG 1 cut(s) 318
MluCI AATT 6 cut(s) 170, 318, 719, 768, 925, 937
Mly113I GGCGCC 1 cut(s) 300
MlyI GAGTC 2 cut(s) 335, 608
MmeI TCCRAC 2 cut(s) 247, 819
MroXI GAANNNNTTC 1 cut(s) 656
MseI TTAA 3 cut(s) 591, 1260, 1338
MslI CAYNNNNRTG 2 cut(s) 437, 749
MspA1I CMGCKG 2 cut(s) 296, 403
MspI CCGG 1 cut(s) 968
MspR9I CCNGG 2 cut(s) 60, 969
MunI CAATTG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 2 cut(s) 296, 945
MwoI GCNNNNNNNGC 3 cut(s) 406, 948, 1061
NarI GGCGCC 1 cut(s) 300
NciI CCSGG 1 cut(s) 969
NdeI CATATG 2 cut(s) 254, 854
NdeII GATC 8 cut(s) 462, 508, 572, 627, 894, 971, 1024, 1044
NlaIII CATG 3 cut(s) 515, 870, 1372
NlaIV GGNNCC 4 cut(s) 10, 301, 444, 499
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 641
NspV TTCGAA 1 cut(s) 739
OliI CACNNNNGTG 2 cut(s) 437, 749
PdmI GAANNNNTTC 1 cut(s) 656
PfeI GAWTC 4 cut(s) 380, 818, 1324, 1355
PflMI CCANNNNNTGG 1 cut(s) 482
PkrI GCNGC 7 cut(s) 17, 402, 405, 408, 934, 944, 1054
PleI GAGTC 2 cut(s) 334, 607
PluTI GGCGCC 1 cut(s) 303
PmaCI CACGTG 1 cut(s) 437
PmlI CACGTG 1 cut(s) 437
PpsI GAGTC 2 cut(s) 334, 607
Ppu21I YACGTR 2 cut(s) 437, 1288
Psp1406I AACGTT 1 cut(s) 1263
Psp6I CCWGG 1 cut(s) 58
PspCI CACGTG 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 1187
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 4 cut(s) 10, 301, 444, 499
PspPI GGNCC 1 cut(s) 558
PstI CTGCAG 2 cut(s) 17, 1129
RsaI GTAC 4 cut(s) 444, 459, 499, 688
RsaNI GTAC 4 cut(s) 443, 458, 498, 687
RseI CAYNNNNRTG 2 cut(s) 437, 749
SacII CCGCGG 1 cut(s) 297
SaqAI TTAA 3 cut(s) 591, 1260, 1338
SatI GCNGC 7 cut(s) 16, 401, 404, 407, 933, 943, 1053
Sau3AI GATC 8 cut(s) 462, 508, 572, 627, 894, 971, 1024, 1044
Sau96I GGNCC 1 cut(s) 558
ScaI AGTACT 1 cut(s) 688
SchI GAGTC 2 cut(s) 335, 608
ScrFI CCNGG 2 cut(s) 60, 969
SfcI CTRYAG 2 cut(s) 13, 1125
SfoI GGCGCC 1 cut(s) 301
Sfr303I CCGCGG 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 739
SgrBI CCGCGG 1 cut(s) 297
SmiMI CAYNNNNRTG 2 cut(s) 437, 749
SpeI ACTAGT 1 cut(s) 683
Sse9I AATT 6 cut(s) 170, 318, 719, 768, 925, 937
SspDI GGCGCC 1 cut(s) 299
SspMI CTAG 3 cut(s) 684, 1149, 1167
StyD4I CCNGG 2 cut(s) 58, 967
StyI CCWWGG 2 cut(s) 237, 952
TaaI ACNGT 5 cut(s) 8, 469, 506, 989, 1407
TaiI ACGT 4 cut(s) 356, 439, 1266, 1290
TaqI TCGA 3 cut(s) 147, 413, 739
TasI AATT 6 cut(s) 170, 318, 719, 768, 925, 937
TatI WGTACW 2 cut(s) 457, 686
TauI GCSGC 4 cut(s) 403, 409, 945, 1055
TfiI GAWTC 4 cut(s) 380, 818, 1324, 1355
Tru1I TTAA 3 cut(s) 591, 1260, 1338
Tru9I TTAA 3 cut(s) 591, 1260, 1338
TscAI CASTG 4 cut(s) 27, 312, 472, 904
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 3 cut(s) 15, 403, 932
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 5 cut(s) 17, 522, 527, 793, 1230
TspRI CASTG 4 cut(s) 27, 312, 472, 904
Van91I CCANNNNNTGG 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 656
XspI CTAG 3 cut(s) 684, 1149, 1167
ZrmI AGTACT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.