Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001609.1

Orthogroup ID

OG0005947

Physical Location & Seq

Genomic Coordinates Reverse (-)

99655 .. 101070

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001609.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

atggagggttcttgcaacccggctagggttgttgggcaatgcaaggtttctccaccaccaggctcagttcctaccacctctctccctctcactttcttcgacattgttttcctcttctgcggtccggttgaatttgtatacttttatgagttccctcaccctcttcaccacatcacccaaaccatcctccccaagctcagacactctctttccctaactctccagcacttctttcccttggcctcaagtctcatctgccctccaccaccctccaaaccctttctacattactctgagactgaccgaacctcactcctattgaccattgccgagtcctcaagcaacttcaaccgcctcacatcccaccgtgtaaacaatgttgcacaatcccacttccttgttccaccattgccaccagcacgtgtgttggaggatggcacgcgtgtggtcactcctgtagcattgcaactcactgtgttccccaactccgggatctgcattggcattaattttcttcatgcattgactgatgggagttctttgcatcatttcatgaagtcatgggcatctgtttgtttatcacaaggagtcaaggctttgactagcactcccccatcccataatagaggtttgattaaagacccatgcggccttgagaacaagttcttagctgtatggagaagttggacgcctatcccatgggagcttcatatgaacccattccatccctccctaactgaaaaagtccgaaccacattcgtgttgagtagaccaaaaatcgacagacttaaacagtgggtgtctagcttattcagtgctgttcatggttctaagccaccccatatgtcatcatttgtagttatatgcgctttgacatgggtttgtttggtcaaagcagaggagatcaatgatgatgaaatgcaatgctacttcaattactcggctgacagccgaaaccggcttgagtatccattacctagttcatattttgggaactgtttatcaatacgttctactcaagtgaagaagagtgagctagttaaggaaaatggactcattatggcagtggatgctattggaaaaaatgtgaaagatttggagagtggggttttgagaggagctgaggagtggacttcagattgggacaagggaactaatagtcctccaatgcatttaaccttgcttgctggctcaccaagacttgatttttataatgacattgattttgggtgggggagacccaaaaagagtgaggttataaacgttgattttgattttccgaagtttatttacctcagtaatagtagagaagaggaaggtgggtttgagattgtcttggcatttgaaaaggaaaaaatgaagtccttcacttccatctttgaacaagctttgaaactcccggaatcgcatttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747 GO:0033809

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

471

Amino Acids

52.9

Weight (kDa)

7.01

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03495 AT1G03940
fragaria_vesca	FvH4_6g44510 FvH4_7g00870
malus_domestica	MD07G1008000.v1.1 MD09G1097600.v1.1 MD17G1085800.v1.1 MD17G1085900.v1.1
prunus_persica	Prupe.2G010800_v2.0.a1
pyrus_communis	pycom07g00670
rosa_chinensis	RchiOBHm_Chr1g0315741 RchiOBHm_Chr1g0358611
rosa_laevigata	RLG00000027941 RLG00000030735
rosa_multiflora	Rmu_sc0001609.1_g000021 Rmu_sc0004180.1_g000004
rosa_roxburghii	Rroxscaffold_4G00331460
rosa_rugosa	Rorug01G0005400
rosa_samantha	Rh1AG016200 Rh1AG278100 Rh1BG008600 Rh1BG244600 Rh1CG261500 Rh1DG009200 Rh1DG272900
rosa_wichuraiana	Rw1G000950 Rw1G024680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1212, 1259, 1414
AccI	GTMKAC	2 cut(s)	138, 769
AccII	CGCG	1 cut(s)	442
AciI	CCGC	3 cut(s)	120, 352, 648
AclI	AACGTT	1 cut(s)	1263
AclWI	GGATC	1 cut(s)	500
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	1119
AcvI	CACGTG	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	689
AfiI	CCNNNNNNNGG	4 cut(s)	25, 59, 488, 489
AflIII	ACRYGT	2 cut(s)	421, 440
AgsI	TTSAA	6 cut(s)	131, 349, 934, 1346, 1382, 1393
AjnI	CCWGG	1 cut(s)	58
AleI	CACNNNNGTG	2 cut(s)	443, 758
AloI	GAACNNNNNNTCC	2 cut(s)	1144, 1176
AluBI	AGCT	7 cut(s)	196, 671, 706, 807, 1036, 1121, 1388
AluI	AGCT	7 cut(s)	196, 671, 706, 807, 1036, 1121, 1388
Alw26I	GTCTC	3 cut(s)	254, 290, 1231
AlwI	GGATC	1 cut(s)	500
AoxI	GGCC	2 cut(s)	240, 649
ApoI	RAATTY	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	1208, 1240
AseI	ATTAAT	1 cut(s)	507
Asp700I	GAANNNNTTC	3 cut(s)	662, 719, 1364
AspLEI	GCGC	1 cut(s)	869
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	3 cut(s)	20, 490, 1400
AsuHPI	GGTGA	4 cut(s)	149, 158, 166, 1185
AvaII	GGWCC	1 cut(s)	122
BarI	GAAGNNNNNNTAC	2 cut(s)	1274, 1306
BbrPI	CACGTG	1 cut(s)	422
BbvCI	CCTCAGC	1 cut(s)	1122
BccI	CCATC	6 cut(s)	191, 428, 524, 622, 732, 1382
BciT130I	CCWGG	1 cut(s)	60
BciVI	GTATCC	1 cut(s)	978
BcnI	CCSGG	3 cut(s)	20, 490, 1400
BcoDI	GTCTC	3 cut(s)	254, 290, 1231
BfaI	CTAG	5 cut(s)	24, 603, 804, 978, 1037
BfmI	CTRYAG	1 cut(s)	456
BfuI	GTATCC	1 cut(s)	978
BisI	GCNGC	1 cut(s)	649
BlsI	GCNGC	1 cut(s)	650
Bme1390I	CCNGG	4 cut(s)	20, 60, 490, 1400
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmrFI	CCNGG	4 cut(s)	20, 60, 490, 1400
BmsI	GCATC	3 cut(s)	553, 575, 1060
BpmI	CTGGAG	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	1122
BpuEI	CTTGAG	5 cut(s)	229, 322, 674, 983, 1002
BpuMI	CCSGG	3 cut(s)	20, 490, 1400
BsaAI	YACGTR	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	689
BsaI	GGTCTC	1 cut(s)	1231
BsaJI	CCNNGG	2 cut(s)	237, 698
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 59, 488, 489
Bse118I	RCCGGY	1 cut(s)	957
Bse3DI	GCAATG	5 cut(s)	44, 324, 407, 461, 929
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	237, 698
BseGI	GGATG	6 cut(s)	183, 359, 439, 614, 724, 1075
BseLI	CCNNNNNNNGG	4 cut(s)	25, 59, 488, 489
BseMI	GCAATG	5 cut(s)	44, 324, 407, 461, 929
BseMII	CTCAG	5 cut(s)	78, 211, 285, 1113, 1309
BseRI	GAGGAG	3 cut(s)	914, 1131, 1139
Bsh1236I	CGCG	1 cut(s)	442
BshFI	GGCC	2 cut(s)	242, 651
BsiSI	CCGG	5 cut(s)	20, 125, 489, 958, 1400
BslFI	GGGAC	1 cut(s)	1157
BslI	CCNNNNNNNGG	4 cut(s)	25, 59, 488, 489
BsmAI	GTCTC	3 cut(s)	254, 290, 1231
BsmFI	GGGAC	1 cut(s)	1157
BsnI	GGCC	2 cut(s)	242, 651
Bso31I	GGTCTC	1 cut(s)	1231
Bsp143I	GATC	2 cut(s)	492, 903
Bsp19I	CCATGG	1 cut(s)	698
BspACI	CCGC	3 cut(s)	120, 352, 648
BspANI	GGCC	2 cut(s)	242, 651
BspCNI	CTCAG	5 cut(s)	77, 210, 286, 1114, 1308
BspFNI	CGCG	1 cut(s)	442
BspHI	TCATGA	1 cut(s)	552
BspPI	GGATC	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	1231
BsrDI	GCAATG	5 cut(s)	44, 324, 407, 461, 929
BsrFI	RCCGGY	1 cut(s)	957
BssAI	RCCGGY	1 cut(s)	957
BssECI	CCNNGG	2 cut(s)	237, 698
BssMI	GATC	2 cut(s)	492, 903
BssNAI	GTATAC	1 cut(s)	139
BssNI	GRCGYC	1 cut(s)	689
BssT1I	CCWWGG	2 cut(s)	237, 698
Bst1107I	GTATAC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	4 cut(s)	368, 475, 795, 998
Bst6I	CTCTTC	4 cut(s)	119, 168, 1022, 1305
BstACI	GRCGYC	1 cut(s)	689
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	440, 1185, 1189
BstDEI	CTNAG	7 cut(s)	64, 197, 294, 667, 831, 1122, 1295
BstDSI	CCRYGG	1 cut(s)	698
BstF5I	GGATG	6 cut(s)	183, 359, 439, 614, 724, 1075
BstFNI	CGCG	1 cut(s)	442
BstHHI	GCGC	1 cut(s)	869
BstKTI	GATC	2 cut(s)	495, 906
BstMAI	GTCTC	3 cut(s)	254, 290, 1231
BstMBI	GATC	2 cut(s)	492, 903
BstMWI	GCNNNNNNNGC	1 cut(s)	1070
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	4 cut(s)	18, 58, 488, 1398
BstSFI	CTRYAG	1 cut(s)	456
BstUI	CGCG	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	492
BstYI	RGATCY	1 cut(s)	492
BstZ17I	GTATAC	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	978
BsuRI	GGCC	2 cut(s)	242, 651
BtgI	CCRYGG	1 cut(s)	698
BtsCI	GGATG	6 cut(s)	183, 359, 439, 614, 724, 1075
BtsI	GCAGTG	1 cut(s)	1071
BtsIMutI	CAGTG	4 cut(s)	471, 800, 820, 1071
Cac8I	GCNNGC	3 cut(s)	440, 1185, 1189
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	1 cut(s)	869
Cfr10I	RCCGGY	1 cut(s)	957
Cfr13I	GGNCC	1 cut(s)	122
CpoI	CGGWCCG	1 cut(s)	122
CseI	GACGC	1 cut(s)	697
CspI	CGGWCCG	1 cut(s)	122
CviAII	CATG	7 cut(s)	518, 553, 561, 645, 699, 824, 876
DdeI	CTNAG	7 cut(s)	64, 197, 294, 667, 831, 1122, 1295
DpnI	GATC	2 cut(s)	494, 905
DpnII	GATC	2 cut(s)	492, 903
Eam1104I	CTCTTC	4 cut(s)	119, 168, 1022, 1305
EarI	CTCTTC	4 cut(s)	119, 168, 1022, 1305
Eco130I	CCWWGG	2 cut(s)	237, 698
Eco31I	GGTCTC	1 cut(s)	1231
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	1119
Eco72I	CACGTG	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	237, 698
EcoT22I	ATGCAT	2 cut(s)	523, 1173
ErhI	CCWWGG	2 cut(s)	237, 698
FaeI	CATG	7 cut(s)	521, 556, 564, 648, 702, 827, 879
FaqI	GGGAC	1 cut(s)	1157
FatI	CATG	7 cut(s)	517, 552, 560, 644, 698, 823, 875
FauNDI	CATATG	2 cut(s)	711, 843
FblI	GTMKAC	2 cut(s)	138, 769
Fnu4HI	GCNGC	1 cut(s)	649
FokI	GGATG	6 cut(s)	170, 346, 446, 601, 711, 1082
Fsp4HI	GCNGC	1 cut(s)	649
FspBI	CTAG	5 cut(s)	24, 603, 804, 978, 1037
GlaI	GCGC	1 cut(s)	868
GluI	GCNGC	1 cut(s)	649
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	242, 651
HapII	CCGG	5 cut(s)	20, 125, 489, 958, 1400
HgaI	GACGC	1 cut(s)	697
HhaI	GCGC	1 cut(s)	869
Hin1I	GRCGYC	1 cut(s)	689
Hin1II	CATG	7 cut(s)	521, 556, 564, 648, 702, 827, 879
Hin6I	GCGC	1 cut(s)	867
HinP1I	GCGC	1 cut(s)	867
HindIII	AAGCTT	1 cut(s)	1386
HinfI	GANTC	4 cut(s)	332, 588, 1053, 1403
HpaII	CCGG	5 cut(s)	20, 125, 489, 958, 1400
HphI	GGTGA	4 cut(s)	149, 158, 166, 1185
Hpy166II	GTNNAC	4 cut(s)	139, 373, 770, 1131
Hpy188I	TCNGA	5 cut(s)	200, 295, 749, 1138, 1281
Hpy188III	TCNNGA	1 cut(s)	553
Hpy8I	GTNNAC	4 cut(s)	139, 373, 770, 1131
HpyAV	CCTTC	2 cut(s)	1310, 1375
HpyCH4III	ACNGT	4 cut(s)	368, 475, 795, 998
HpyCH4IV	ACGT	3 cut(s)	421, 1009, 1263
HpyCH4V	TGCA	9 cut(s)	15, 42, 383, 466, 498, 521, 544, 922, 1171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1070
HpyF3I	CTNAG	7 cut(s)	64, 197, 294, 667, 831, 1122, 1295
HpySE526I	ACGT	3 cut(s)	421, 1009, 1263
Hsp92I	GRCGYC	1 cut(s)	689
Hsp92II	CATG	7 cut(s)	521, 556, 564, 648, 702, 827, 879
HspAI	GCGC	1 cut(s)	867
Kzo9I	GATC	2 cut(s)	492, 903
LmnI	GCTCC	2 cut(s)	703, 1118
LweI	GCATC	3 cut(s)	553, 575, 1060
MaeI	CTAG	5 cut(s)	24, 603, 804, 978, 1037
MaeII	ACGT	3 cut(s)	421, 1009, 1263
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	2 cut(s)	494, 905
MboI	GATC	2 cut(s)	492, 903
MboII	GAAGA	7 cut(s)	88, 106, 155, 506, 1036, 1039, 1322
MflI	RGATCY	1 cut(s)	492
MluCI	AATT	3 cut(s)	131, 508, 934
MluI	ACGCGT	1 cut(s)	440
MlyI	GAGTC	3 cut(s)	341, 597, 1047
MmeI	TCCRAC	2 cut(s)	408, 665
Mph1103I	ATGCAT	2 cut(s)	523, 1173
MroXI	GAANNNNTTC	3 cut(s)	662, 719, 1364
MseI	TTAA	5 cut(s)	507, 636, 789, 1041, 1175
MslI	CAYNNNNRTG	2 cut(s)	443, 758
MspI	CCGG	5 cut(s)	20, 125, 489, 958, 1400
MspR9I	CCNGG	4 cut(s)	20, 60, 490, 1400
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	442
MwoI	GCNNNNNNNGC	1 cut(s)	1070
NciI	CCSGG	3 cut(s)	20, 490, 1400
NcoI	CCATGG	1 cut(s)	698
NdeI	CATATG	2 cut(s)	711, 843
NdeII	GATC	2 cut(s)	492, 903
NlaIII	CATG	7 cut(s)	521, 556, 564, 648, 702, 827, 879
NmeAIII	GCCGAG	2 cut(s)	355, 920
NmuCI	GTSAC	1 cut(s)	448
NsiI	ATGCAT	2 cut(s)	523, 1173
OliI	CACNNNNGTG	2 cut(s)	443, 758
PagI	TCATGA	1 cut(s)	552
PdmI	GAANNNNTTC	3 cut(s)	662, 719, 1364
PfeI	GAWTC	1 cut(s)	1403
PfoI	TCCNGGA	2 cut(s)	488, 1398
PkrI	GCNGC	1 cut(s)	650
PleI	GAGTC	3 cut(s)	340, 596, 1047
PmaCI	CACGTG	1 cut(s)	422
PmlI	CACGTG	1 cut(s)	422
PpsI	GAGTC	3 cut(s)	340, 596, 1047
Ppu21I	YACGTR	1 cut(s)	422
PshBI	ATTAAT	1 cut(s)	507
PsiI	TTATAA	3 cut(s)	1212, 1259, 1414
Psp1406I	AACGTT	1 cut(s)	1263
Psp6I	CCWGG	1 cut(s)	58
PspCI	CACGTG	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	492
RseI	CAYNNNNRTG	2 cut(s)	443, 758
Rsr2I	CGGWCCG	1 cut(s)	122
RsrII	CGGWCCG	1 cut(s)	122
SaqAI	TTAA	5 cut(s)	507, 636, 789, 1041, 1175
SatI	GCNGC	1 cut(s)	649
Sau3AI	GATC	2 cut(s)	492, 903
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	3 cut(s)	341, 597, 1047
ScrFI	CCNGG	4 cut(s)	20, 60, 490, 1400
SfaNI	GCATC	3 cut(s)	553, 575, 1060
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	2 cut(s)	443, 758
SmlI	CTYRAG	5 cut(s)	244, 337, 653, 962, 1017
SmoI	CTYRAG	5 cut(s)	244, 337, 653, 962, 1017
Sse9I	AATT	3 cut(s)	131, 508, 934
SsiI	CCGC	3 cut(s)	120, 352, 648
SspMI	CTAG	5 cut(s)	24, 603, 804, 978, 1037
StyD4I	CCNGG	4 cut(s)	18, 58, 488, 1398
StyI	CCWWGG	2 cut(s)	237, 698
TaaI	ACNGT	4 cut(s)	368, 475, 795, 998
TaiI	ACGT	3 cut(s)	424, 1012, 1266
TaqI	TCGA	2 cut(s)	99, 780
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	3 cut(s)	131, 508, 934
TauI	GCSGC	1 cut(s)	651
TfiI	GAWTC	1 cut(s)	1403
Tru1I	TTAA	5 cut(s)	507, 636, 789, 1041, 1175
Tru9I	TTAA	5 cut(s)	507, 636, 789, 1041, 1175
TscAI	CASTG	4 cut(s)	478, 800, 820, 1071
TseFI	GTSAC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	9 cut(s)	506, 541, 569, 698, 728, 812, 930, 972, 1373
TspRI	CASTG	4 cut(s)	478, 800, 820, 1071
VpaK11BI	GGWCC	1 cut(s)	122
VspI	ATTAAT	1 cut(s)	507
XapI	RAATTY	1 cut(s)	131
XmiI	GTMKAC	2 cut(s)	138, 769
XmnI	GAANNNNTTC	3 cut(s)	662, 719, 1364
XspI	CTAG	5 cut(s)	24, 603, 804, 978, 1037
Zsp2I	ATGCAT	2 cut(s)	523, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.