Rw1G024680

Anthocyanin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005947
Physical Location & Seq
Reverse (-)
51076408 .. 51077822
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024680.1

Sequence Viewer

Length: 1353 bp
ATGGAGGGTTCTTGCAACCCGGCTAGGGTTGTTGGGCAATGCAAGGTTTCTCCACCACCAGGCTCAGTTCCTACCACCTCTCTCCCTCTCACTTTCTTTGACATTGTTTTCCTCTTCTGCGGTCCGGTTGAATTTGTATACTTTTATGAGTTCCCTCACCCTCTTCACCACATCACCCAAACCATCCTCCCCAAGCTCAGACACTCTCTTTCCCTAACTCTCCAGCACTTCTTTCCCTTGGCCTCAAATCTCATCTGCCCTCCACCACCCTCCAAACCCTTTCTACATTACTCTGAGACTGACCGAACCTCACTCCTATTGACCATTGCCGAGTCCTCAAGCAACTTCAACCGCCTCACATCCCACCGTGTAAACAATGTTGCACAATCCCACTTCCTTGTTCCACCATTGCCACCAGCACGTGTGTTGGAGGATGGCACGCGTGTGGTCACTCCTGTAGCATTGCAACTCACTGTGTTCCCCAACTCCGGGATCTGCATTGGCATTAATTTTCTTCATGCATTGACTGATGGGAGTTCTTTGCATCATTTCATGAAGTCATGGGCATCTGTTTGTTTATCACAAGGAGTCGAGGCTTTGACTAGCACTCCCCCATCCCATAATAGAGGTTTGATTAAAGACCCATGCGGCCTTGAGAACAAGTTCTTAGCTGCATGGAGAATCCGAACCACATTCGTGTTGAGTAGACCAAAAATCGACAGACTTAAACAGTGGGTGTCTAGCTTATTCAGTGCTGTTCATGGTTCTAAGCCACCCCATATGTCATCATTTGTAGTTATATGCGCTTTGACATGGGTTTGTTTAGTCAAAGCAGAGGAGATCAATGATGATGAAATGCAATGCTACTTCAATTACTCGGCTGACAGCCGAAACCGGCTTGAATATCCATTACCTAGTTCATATTTTGGGAACTGTTTATCAATACGTTCTACTCAAGTGAAGAAGAGTGAGCTAGTTAAGGAAAATGGACTCACTATGGCAGTGGATGCTATTGGAAAAAATGTGAAAGATTTGGAGAGTGGGGTTTTGAGAGGAGCTGAGGAGTGGACTTCAGATTGGGACAAGGGTACTAATAGTCCTCCAATGCATTTAACCTTGCTTGCTGGCTCACCAAGACTTGATTTTTATAATGACATTGATTTTGGGTGGGGGAGACCCAAAAAGAGTGAGGTTATAAACGTTGATTTTGATTTTCCGAAGTTTATTTACCTCAGTAATAGCAGAGAAGAGGAAGGTGGGTTTGAGATTGTCTTGGCATTTGAAAAGGAAAAAATGAAGTCCTTCACTTCCATCTTTGAACAAGCTTTGAAGCTCCCGGAATCGCATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747 GO:0033809
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

450

Amino Acids

50.37

Weight (kDa)

6.76

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 23 - 441 1.3e-40 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1149, 1196, 1351
AccI GTMKAC 2 cut(s) 138, 706
AccII CGCG 1 cut(s) 442
AciI CCGC 3 cut(s) 120, 352, 648
AclI AACGTT 1 cut(s) 1200
AclWI GGATC 1 cut(s) 500
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 1056
AcvI CACGTG 1 cut(s) 422
AfaI GTAC 1 cut(s) 1090
AfiI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
AflIII ACRYGT 2 cut(s) 421, 440
AgsI TTSAA 7 cut(s) 131, 349, 871, 902, 1283, 1319, 1330
AjnI CCWGG 1 cut(s) 58
AleI CACNNNNGTG 2 cut(s) 443, 695
AluBI AGCT 7 cut(s) 196, 671, 744, 973, 1058, 1325, 1333
AluI AGCT 7 cut(s) 196, 671, 744, 973, 1058, 1325, 1333
Alw26I GTCTC 2 cut(s) 290, 1168
AlwI GGATC 1 cut(s) 500
AoxI GGCC 2 cut(s) 240, 649
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 1145, 1177
AseI ATTAAT 1 cut(s) 507
Asp700I GAANNNNTTC 2 cut(s) 662, 1301
AspLEI GCGC 1 cut(s) 806
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 3 cut(s) 20, 490, 1337
AsuHPI GGTGA 4 cut(s) 149, 158, 166, 1122
AvaII GGWCC 1 cut(s) 122
BarI GAAGNNNNNNTAC 2 cut(s) 1211, 1243
BbrPI CACGTG 1 cut(s) 422
BbvCI CCTCAGC 1 cut(s) 1059
BbvI GCAGC 1 cut(s) 658
BccI CCATC 5 cut(s) 191, 428, 524, 622, 1319
BciT130I CCWGG 1 cut(s) 60
BcnI CCSGG 3 cut(s) 20, 490, 1337
BcoDI GTCTC 2 cut(s) 290, 1168
BfaI CTAG 5 cut(s) 24, 603, 741, 915, 974
BfmI CTRYAG 1 cut(s) 456
BisI GCNGC 2 cut(s) 649, 672
BlsI GCNGC 2 cut(s) 650, 673
Bme1390I CCNGG 4 cut(s) 20, 60, 490, 1337
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 4 cut(s) 20, 60, 490, 1337
BmsI GCATC 3 cut(s) 553, 575, 997
BpmI CTGGAG 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 1059
BpuEI CTTGAG 3 cut(s) 322, 674, 939
BpuMI CCSGG 3 cut(s) 20, 490, 1337
BsaAI YACGTR 1 cut(s) 422
BsaI GGTCTC 1 cut(s) 1168
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
Bse118I RCCGGY 1 cut(s) 894
Bse3DI GCAATG 5 cut(s) 44, 324, 407, 461, 866
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 5 cut(s) 183, 359, 439, 614, 1012
BseLI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
BseMI GCAATG 5 cut(s) 44, 324, 407, 461, 866
BseMII CTCAG 5 cut(s) 78, 211, 285, 1050, 1246
BseRI GAGGAG 3 cut(s) 851, 1068, 1076
BseXI GCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 2 cut(s) 242, 651
BsiSI CCGG 5 cut(s) 20, 125, 489, 895, 1337
BslFI GGGAC 1 cut(s) 1094
BslI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
BsmAI GTCTC 2 cut(s) 290, 1168
BsmFI GGGAC 1 cut(s) 1094
BsnI GGCC 2 cut(s) 242, 651
Bso31I GGTCTC 1 cut(s) 1168
Bsp143I GATC 2 cut(s) 492, 840
BspACI CCGC 3 cut(s) 120, 352, 648
BspANI GGCC 2 cut(s) 242, 651
BspCNI CTCAG 5 cut(s) 77, 210, 286, 1051, 1245
BspFNI CGCG 1 cut(s) 442
BspHI TCATGA 1 cut(s) 552
BspPI GGATC 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 1168
BsrDI GCAATG 5 cut(s) 44, 324, 407, 461, 866
BsrFI RCCGGY 1 cut(s) 894
BssAI RCCGGY 1 cut(s) 894
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 492, 840
BssNAI GTATAC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 237
Bst1107I GTATAC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 4 cut(s) 368, 475, 732, 935
Bst6I CTCTTC 4 cut(s) 119, 168, 959, 1242
BstAPI GCANNNNNTGC 1 cut(s) 1007
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 3 cut(s) 440, 1122, 1126
BstDEI CTNAG 7 cut(s) 64, 197, 294, 667, 768, 1059, 1232
BstF5I GGATG 5 cut(s) 183, 359, 439, 614, 1012
BstFNI CGCG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 806
BstKTI GATC 2 cut(s) 495, 843
BstMAI GTCTC 2 cut(s) 290, 1168
BstMBI GATC 2 cut(s) 492, 840
BstMWI GCNNNNNNNGC 1 cut(s) 1007
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 4 cut(s) 18, 58, 488, 1335
BstSFI CTRYAG 1 cut(s) 456
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 1 cut(s) 658
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BstZ17I GTATAC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 242, 651
BtsCI GGATG 5 cut(s) 183, 359, 439, 614, 1012
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 4 cut(s) 471, 737, 757, 1008
Cac8I GCNNGC 3 cut(s) 440, 1122, 1126
CciI TCATGA 1 cut(s) 552
CfoI GCGC 1 cut(s) 806
Cfr10I RCCGGY 1 cut(s) 894
Cfr13I GGNCC 1 cut(s) 122
CpoI CGGWCCG 1 cut(s) 122
Csp6I GTAC 1 cut(s) 1089
CspI CGGWCCG 1 cut(s) 122
CviAII CATG 7 cut(s) 518, 553, 561, 645, 675, 761, 813
CviQI GTAC 1 cut(s) 1089
DdeI CTNAG 7 cut(s) 64, 197, 294, 667, 768, 1059, 1232
DpnI GATC 2 cut(s) 494, 842
DpnII GATC 2 cut(s) 492, 840
Eam1104I CTCTTC 4 cut(s) 119, 168, 959, 1242
EarI CTCTTC 4 cut(s) 119, 168, 959, 1242
Eco130I CCWWGG 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 1168
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 1056
Eco72I CACGTG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 237
EcoT22I ATGCAT 2 cut(s) 523, 1110
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 7 cut(s) 521, 556, 564, 648, 678, 764, 816
FaqI GGGAC 1 cut(s) 1094
FatI CATG 7 cut(s) 517, 552, 560, 644, 674, 760, 812
FauNDI CATATG 1 cut(s) 780
FblI GTMKAC 2 cut(s) 138, 706
Fnu4HI GCNGC 2 cut(s) 649, 672
FokI GGATG 5 cut(s) 170, 346, 446, 601, 1019
Fsp4HI GCNGC 2 cut(s) 649, 672
FspBI CTAG 5 cut(s) 24, 603, 741, 915, 974
GlaI GCGC 1 cut(s) 805
GluI GCNGC 2 cut(s) 649, 672
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 2 cut(s) 242, 651
HapII CCGG 5 cut(s) 20, 125, 489, 895, 1337
HhaI GCGC 1 cut(s) 806
Hin1II CATG 7 cut(s) 521, 556, 564, 648, 678, 764, 816
Hin6I GCGC 1 cut(s) 804
HinP1I GCGC 1 cut(s) 804
HindIII AAGCTT 1 cut(s) 1323
HinfI GANTC 5 cut(s) 332, 588, 681, 990, 1340
HpaII CCGG 5 cut(s) 20, 125, 489, 895, 1337
HphI GGTGA 4 cut(s) 149, 158, 166, 1122
Hpy166II GTNNAC 4 cut(s) 139, 373, 707, 1068
Hpy188I TCNGA 5 cut(s) 200, 295, 686, 1075, 1218
Hpy188III TCNNGA 1 cut(s) 553
Hpy8I GTNNAC 4 cut(s) 139, 373, 707, 1068
HpyAV CCTTC 2 cut(s) 1247, 1312
HpyCH4III ACNGT 4 cut(s) 368, 475, 732, 935
HpyCH4IV ACGT 3 cut(s) 421, 946, 1200
HpyF10VI GCNNNNNNNGC 1 cut(s) 1007
HpyF3I CTNAG 7 cut(s) 64, 197, 294, 667, 768, 1059, 1232
HpySE526I ACGT 3 cut(s) 421, 946, 1200
Hsp92II CATG 7 cut(s) 521, 556, 564, 648, 678, 764, 816
HspAI GCGC 1 cut(s) 804
Kzo9I GATC 2 cut(s) 492, 840
LmnI GCTCC 2 cut(s) 1055, 1338
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 3 cut(s) 553, 575, 997
MaeI CTAG 5 cut(s) 24, 603, 741, 915, 974
MaeII ACGT 3 cut(s) 421, 946, 1200
MaeIII GTNAC 1 cut(s) 448
MalI GATC 2 cut(s) 494, 842
MboI GATC 2 cut(s) 492, 840
MboII GAAGA 6 cut(s) 106, 155, 506, 973, 976, 1259
MflI RGATCY 1 cut(s) 492
MluCI AATT 3 cut(s) 131, 508, 871
MluI ACGCGT 1 cut(s) 440
MlyI GAGTC 3 cut(s) 341, 597, 984
MmeI TCCRAC 1 cut(s) 408
Mph1103I ATGCAT 2 cut(s) 523, 1110
MroXI GAANNNNTTC 2 cut(s) 662, 1301
MseI TTAA 5 cut(s) 507, 636, 726, 978, 1112
MslI CAYNNNNRTG 2 cut(s) 443, 695
MspI CCGG 5 cut(s) 20, 125, 489, 895, 1337
MspR9I CCNGG 4 cut(s) 20, 60, 490, 1337
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 442
MwoI GCNNNNNNNGC 1 cut(s) 1007
NciI CCSGG 3 cut(s) 20, 490, 1337
NdeI CATATG 1 cut(s) 780
NdeII GATC 2 cut(s) 492, 840
NlaIII CATG 7 cut(s) 521, 556, 564, 648, 678, 764, 816
NmeAIII GCCGAG 2 cut(s) 355, 857
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 2 cut(s) 523, 1110
OliI CACNNNNGTG 2 cut(s) 443, 695
PagI TCATGA 1 cut(s) 552
PdmI GAANNNNTTC 2 cut(s) 662, 1301
PfeI GAWTC 2 cut(s) 681, 1340
PfoI TCCNGGA 2 cut(s) 488, 1335
PkrI GCNGC 2 cut(s) 650, 673
PleI GAGTC 3 cut(s) 340, 596, 984
PmaCI CACGTG 1 cut(s) 422
PmlI CACGTG 1 cut(s) 422
PpsI GAGTC 3 cut(s) 340, 596, 984
Ppu21I YACGTR 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 507
PsiI TTATAA 3 cut(s) 1149, 1196, 1351
Psp1406I AACGTT 1 cut(s) 1200
Psp6I CCWGG 1 cut(s) 58
PspCI CACGTG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 58
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 1 cut(s) 1090
RsaNI GTAC 1 cut(s) 1089
RseI CAYNNNNRTG 2 cut(s) 443, 695
Rsr2I CGGWCCG 1 cut(s) 122
RsrII CGGWCCG 1 cut(s) 122
SaqAI TTAA 5 cut(s) 507, 636, 726, 978, 1112
SatI GCNGC 2 cut(s) 649, 672
Sau3AI GATC 2 cut(s) 492, 840
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 3 cut(s) 341, 597, 984
ScrFI CCNGG 4 cut(s) 20, 60, 490, 1337
SfaNI GCATC 3 cut(s) 553, 575, 997
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 2 cut(s) 443, 695
SmlI CTYRAG 3 cut(s) 337, 653, 954
SmoI CTYRAG 3 cut(s) 337, 653, 954
Sse9I AATT 3 cut(s) 131, 508, 871
SsiI CCGC 3 cut(s) 120, 352, 648
SspMI CTAG 5 cut(s) 24, 603, 741, 915, 974
StyD4I CCNGG 4 cut(s) 18, 58, 488, 1335
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 4 cut(s) 368, 475, 732, 935
TaiI ACGT 3 cut(s) 424, 949, 1203
TaqI TCGA 2 cut(s) 591, 717
TaqII GACCGA 1 cut(s) 318
TasI AATT 3 cut(s) 131, 508, 871
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 2 cut(s) 681, 1340
Tru1I TTAA 5 cut(s) 507, 636, 726, 978, 1112
Tru9I TTAA 5 cut(s) 507, 636, 726, 978, 1112
TscAI CASTG 4 cut(s) 478, 737, 757, 1008
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 7 cut(s) 506, 541, 569, 749, 867, 909, 1310
TspRI CASTG 4 cut(s) 478, 737, 757, 1008
VpaK11BI GGWCC 1 cut(s) 122
VspI ATTAAT 1 cut(s) 507
XapI RAATTY 1 cut(s) 131
XmiI GTMKAC 2 cut(s) 138, 706
XmnI GAANNNNTTC 2 cut(s) 662, 1301
XspI CTAG 5 cut(s) 24, 603, 741, 915, 974
Zsp2I ATGCAT 2 cut(s) 523, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.