Rh1CG261500

Anthocyanin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005947
Physical Location & Seq
Reverse (-)
52610406 .. 52611821
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG261500.1

Sequence Viewer

Length: 1170 bp
ATGGAGGGTTCTTGCAACCCGGCTAGGGTTGTTGGGCAATGCAAGGTTTCTCCACCACCAGGCTCAGTTCCTACCACCTCTCTCCCTCTCACTTTCTTTGACATTGTTTTCCTCTTCTGCGGTCCGGTTGAATTTGTATACTTTTATGAGTTCCCTCACCCTCTTCACCACATCACCCAAACCATCCTCCCCAAGCTCAGACACTCTCTTTCCCTAACTCTCCAGCACTTCTTTCCCTTGGCCTCAAATCTCATCTGCCCTCCACCACCCTCCAAACCCTTTCTACATTACTCTGAGACTGACCGAACCTCACTCCTATTGACCATTGCCGAGTCCTCAAGCAACTTCAACCGCCTCACATCCCACCGTGTAAACAATGTTGCACAATCCCACTTCCTTGTTCCACCATTGCCACCAGCACGTGTGTTGGAGGATGGCACGCGTGTGGTCACTCCTGTAGCATTGCAACTCACTGTGTTCCCCAACTCCGGGATCTGCATCGGCATTAATTTTCTTCATGCATTGACTGATGGGAGTTCTTTGCATCATTTCATGAAGTCATGGGCATCTGTTTGTTTATCACAAGGAGTCAAGGCTTTGACTAGCACTCCCCCATCCCATAATAGAGGTTTGATTAAAGACCCATGCTGCCTTGAGAACAAGTTCTTAGCTGCATGGAGAAGTTGGACGCCTATCCCATGGGAGCTTCATATGAACCCATTCCATCCCTCTCTAACTGAAAAAGTCCGAACCACATTCGTGTTGAGTAGACCAAAAATCGACAGACTTAAACAGTGGGTGTCTAGCTTATTCAGTGCTGTTCATGGTTCTAAGCCACCCCATATGTCATCATTTGTAGTTATATGCGCTTTGACATGGGTTTGTTTAGTCAAAGCAGAGGAGATCAATGATGATGAAATGCAATGCTACTTCAATTACTCGGCTGACAGCCGAAACCGGCTTGAGTATCCATTACCTAGTTCATATTTTGGGAACTGTTTATCAATACGTTCTACTCAAGTGAAGAAGAGTGAGCTATTTATTTACCTCAGTAATAGCAGAGAAGAGGAAGGTGGGTTTGAGATTGTCTTGGCATTTGAAAAGGAAAAAATGAAGTCCTTCACTTCCATCTTTGAACAAGCTTTGAAGCTCCCGGAATCGCATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747 GO:0033809
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

389

Amino Acids

43.82

Weight (kDa)

8.22

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 23 - 346 7.2e-32 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1168
AccI GTMKAC 2 cut(s) 138, 769
AccII CGCG 1 cut(s) 442
AciI CCGC 2 cut(s) 120, 352
AclWI GGATC 1 cut(s) 500
AcsI RAATTY 1 cut(s) 131
AcvI CACGTG 1 cut(s) 422
AcyI GRCGYC 1 cut(s) 689
AfiI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
AflIII ACRYGT 2 cut(s) 421, 440
AgsI TTSAA 6 cut(s) 131, 349, 934, 1100, 1136, 1147
AjnI CCWGG 1 cut(s) 58
AleI CACNNNNGTG 2 cut(s) 443, 758
AluBI AGCT 7 cut(s) 196, 671, 706, 807, 1036, 1142, 1150
AluI AGCT 7 cut(s) 196, 671, 706, 807, 1036, 1142, 1150
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 500
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 648, 671
ApoI RAATTY 1 cut(s) 131
AseI ATTAAT 1 cut(s) 507
Asp700I GAANNNNTTC 3 cut(s) 662, 719, 1118
AspLEI GCGC 1 cut(s) 869
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 3 cut(s) 20, 490, 1154
AsuHPI GGTGA 3 cut(s) 149, 158, 166
AvaII GGWCC 1 cut(s) 122
BbrPI CACGTG 1 cut(s) 422
BbvI GCAGC 2 cut(s) 635, 658
BccI CCATC 6 cut(s) 191, 428, 524, 622, 732, 1136
BciT130I CCWGG 1 cut(s) 60
BciVI GTATCC 1 cut(s) 978
BcnI CCSGG 3 cut(s) 20, 490, 1154
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 4 cut(s) 24, 603, 804, 978
BfmI CTRYAG 1 cut(s) 456
BfuI GTATCC 1 cut(s) 978
BisI GCNGC 2 cut(s) 649, 672
BlsI GCNGC 2 cut(s) 650, 673
Bme1390I CCNGG 4 cut(s) 20, 60, 490, 1154
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 4 cut(s) 20, 60, 490, 1154
BmsI GCATC 3 cut(s) 507, 553, 575
BpmI CTGGAG 1 cut(s) 206
BpuEI CTTGAG 4 cut(s) 322, 674, 983, 1002
BpuMI CCSGG 3 cut(s) 20, 490, 1154
BsaAI YACGTR 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 497
BsaHI GRCGYC 1 cut(s) 689
BsaJI CCNNGG 2 cut(s) 237, 698
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
Bse118I RCCGGY 1 cut(s) 957
Bse3DI GCAATG 5 cut(s) 44, 324, 407, 461, 929
Bse8I GATNNNNATC 1 cut(s) 497
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 237, 698
BseGI GGATG 5 cut(s) 183, 359, 439, 614, 724
BseJI GATNNNNATC 1 cut(s) 497
BseLI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
BseMI GCAATG 5 cut(s) 44, 324, 407, 461, 929
BseMII CTCAG 4 cut(s) 78, 211, 285, 1063
BseRI GAGGAG 1 cut(s) 914
BseXI GCAGC 2 cut(s) 635, 658
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 1 cut(s) 242
BsiSI CCGG 5 cut(s) 20, 125, 489, 958, 1154
BslI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 1 cut(s) 242
Bsp143I GATC 2 cut(s) 492, 903
Bsp19I CCATGG 1 cut(s) 698
BspACI CCGC 2 cut(s) 120, 352
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 4 cut(s) 77, 210, 286, 1062
BspFNI CGCG 1 cut(s) 442
BspHI TCATGA 1 cut(s) 552
BspPI GGATC 1 cut(s) 500
BsrDI GCAATG 5 cut(s) 44, 324, 407, 461, 929
BsrFI RCCGGY 1 cut(s) 957
BssAI RCCGGY 1 cut(s) 957
BssECI CCNNGG 2 cut(s) 237, 698
BssMI GATC 2 cut(s) 492, 903
BssNAI GTATAC 1 cut(s) 139
BssNI GRCGYC 1 cut(s) 689
BssT1I CCWWGG 2 cut(s) 237, 698
Bst1107I GTATAC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 4 cut(s) 368, 475, 795, 998
Bst6I CTCTTC 4 cut(s) 119, 168, 1022, 1059
BstACI GRCGYC 1 cut(s) 689
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 440
BstDEI CTNAG 6 cut(s) 64, 197, 294, 667, 831, 1049
BstDSI CCRYGG 1 cut(s) 698
BstF5I GGATG 5 cut(s) 183, 359, 439, 614, 724
BstFNI CGCG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 869
BstKTI GATC 2 cut(s) 495, 906
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 2 cut(s) 492, 903
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 4 cut(s) 18, 58, 488, 1152
BstSFI CTRYAG 1 cut(s) 456
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 635, 658
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BstZ17I GTATAC 1 cut(s) 139
BsuI GTATCC 1 cut(s) 978
BsuRI GGCC 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 698
BtsCI GGATG 5 cut(s) 183, 359, 439, 614, 724
BtsIMutI CAGTG 3 cut(s) 471, 800, 820
Cac8I GCNNGC 1 cut(s) 440
CciI TCATGA 1 cut(s) 552
CfoI GCGC 1 cut(s) 869
Cfr10I RCCGGY 1 cut(s) 957
Cfr13I GGNCC 1 cut(s) 122
CpoI CGGWCCG 1 cut(s) 122
CseI GACGC 1 cut(s) 697
CspI CGGWCCG 1 cut(s) 122
CviAII CATG 8 cut(s) 518, 553, 561, 645, 675, 699, 824, 876
DdeI CTNAG 6 cut(s) 64, 197, 294, 667, 831, 1049
DpnI GATC 2 cut(s) 494, 905
DpnII GATC 2 cut(s) 492, 903
Eam1104I CTCTTC 4 cut(s) 119, 168, 1022, 1059
EarI CTCTTC 4 cut(s) 119, 168, 1022, 1059
Eco130I CCWWGG 2 cut(s) 237, 698
Eco47I GGWCC 1 cut(s) 122
Eco72I CACGTG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 2 cut(s) 237, 698
EcoT22I ATGCAT 1 cut(s) 523
ErhI CCWWGG 2 cut(s) 237, 698
FaeI CATG 8 cut(s) 521, 556, 564, 648, 678, 702, 827, 879
FatI CATG 8 cut(s) 517, 552, 560, 644, 674, 698, 823, 875
FauNDI CATATG 2 cut(s) 711, 843
FblI GTMKAC 2 cut(s) 138, 769
Fnu4HI GCNGC 2 cut(s) 649, 672
FokI GGATG 5 cut(s) 170, 346, 446, 601, 711
Fsp4HI GCNGC 2 cut(s) 649, 672
FspBI CTAG 4 cut(s) 24, 603, 804, 978
GlaI GCGC 1 cut(s) 868
GluI GCNGC 2 cut(s) 649, 672
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 1 cut(s) 242
HapII CCGG 5 cut(s) 20, 125, 489, 958, 1154
HgaI GACGC 1 cut(s) 697
HhaI GCGC 1 cut(s) 869
Hin1I GRCGYC 1 cut(s) 689
Hin1II CATG 8 cut(s) 521, 556, 564, 648, 678, 702, 827, 879
Hin6I GCGC 1 cut(s) 867
HinP1I GCGC 1 cut(s) 867
HindIII AAGCTT 1 cut(s) 1140
HinfI GANTC 3 cut(s) 332, 588, 1157
HpaII CCGG 5 cut(s) 20, 125, 489, 958, 1154
HphI GGTGA 3 cut(s) 149, 158, 166
Hpy166II GTNNAC 3 cut(s) 139, 373, 770
Hpy188I TCNGA 3 cut(s) 200, 295, 749
Hpy188III TCNNGA 1 cut(s) 553
Hpy8I GTNNAC 3 cut(s) 139, 373, 770
HpyAV CCTTC 2 cut(s) 1064, 1129
HpyCH4III ACNGT 4 cut(s) 368, 475, 795, 998
HpyCH4IV ACGT 2 cut(s) 421, 1009
HpyCH4V TGCA 9 cut(s) 15, 42, 383, 466, 498, 521, 544, 674, 922
HpyF3I CTNAG 6 cut(s) 64, 197, 294, 667, 831, 1049
HpySE526I ACGT 2 cut(s) 421, 1009
Hsp92I GRCGYC 1 cut(s) 689
Hsp92II CATG 8 cut(s) 521, 556, 564, 648, 678, 702, 827, 879
HspAI GCGC 1 cut(s) 867
Kzo9I GATC 2 cut(s) 492, 903
LmnI GCTCC 2 cut(s) 703, 1155
LpnPI CCDG 9 cut(s) 33, 45, 72, 138, 236, 429, 468, 502, 971
Lsp1109I GCAGC 2 cut(s) 635, 658
LweI GCATC 3 cut(s) 507, 553, 575
MaeI CTAG 4 cut(s) 24, 603, 804, 978
MaeII ACGT 2 cut(s) 421, 1009
MaeIII GTNAC 1 cut(s) 448
MalI GATC 2 cut(s) 494, 905
MboI GATC 2 cut(s) 492, 903
MboII GAAGA 6 cut(s) 106, 155, 506, 1036, 1039, 1076
MflI RGATCY 1 cut(s) 492
MluCI AATT 3 cut(s) 131, 508, 934
MluI ACGCGT 1 cut(s) 440
MlyI GAGTC 2 cut(s) 341, 597
MmeI TCCRAC 2 cut(s) 408, 665
Mph1103I ATGCAT 1 cut(s) 523
MroXI GAANNNNTTC 3 cut(s) 662, 719, 1118
MseI TTAA 3 cut(s) 507, 636, 789
MslI CAYNNNNRTG 2 cut(s) 443, 758
MspI CCGG 5 cut(s) 20, 125, 489, 958, 1154
MspR9I CCNGG 4 cut(s) 20, 60, 490, 1154
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 442
NciI CCSGG 3 cut(s) 20, 490, 1154
NcoI CCATGG 1 cut(s) 698
NdeI CATATG 2 cut(s) 711, 843
NdeII GATC 2 cut(s) 492, 903
NlaIII CATG 8 cut(s) 521, 556, 564, 648, 678, 702, 827, 879
NmeAIII GCCGAG 2 cut(s) 355, 920
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 1 cut(s) 523
OliI CACNNNNGTG 2 cut(s) 443, 758
PagI TCATGA 1 cut(s) 552
PdmI GAANNNNTTC 3 cut(s) 662, 719, 1118
PfeI GAWTC 1 cut(s) 1157
PfoI TCCNGGA 2 cut(s) 488, 1152
PkrI GCNGC 2 cut(s) 650, 673
PleI GAGTC 2 cut(s) 340, 596
PmaCI CACGTG 1 cut(s) 422
PmlI CACGTG 1 cut(s) 422
PpsI GAGTC 2 cut(s) 340, 596
Ppu21I YACGTR 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 507
PsiI TTATAA 1 cut(s) 1168
Psp6I CCWGG 1 cut(s) 58
PspCI CACGTG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 58
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 492
RseI CAYNNNNRTG 2 cut(s) 443, 758
Rsr2I CGGWCCG 1 cut(s) 122
RsrII CGGWCCG 1 cut(s) 122
SaqAI TTAA 3 cut(s) 507, 636, 789
SatI GCNGC 2 cut(s) 649, 672
Sau3AI GATC 2 cut(s) 492, 903
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 2 cut(s) 341, 597
ScrFI CCNGG 4 cut(s) 20, 60, 490, 1154
SfaNI GCATC 3 cut(s) 507, 553, 575
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 2 cut(s) 443, 758
SmlI CTYRAG 4 cut(s) 337, 653, 962, 1017
SmoI CTYRAG 4 cut(s) 337, 653, 962, 1017
Sse9I AATT 3 cut(s) 131, 508, 934
SsiI CCGC 2 cut(s) 120, 352
SspMI CTAG 4 cut(s) 24, 603, 804, 978
StyD4I CCNGG 4 cut(s) 18, 58, 488, 1152
StyI CCWWGG 2 cut(s) 237, 698
TaaI ACNGT 4 cut(s) 368, 475, 795, 998
TaiI ACGT 2 cut(s) 424, 1012
TaqI TCGA 1 cut(s) 780
TaqII GACCGA 1 cut(s) 318
TasI AATT 3 cut(s) 131, 508, 934
TfiI GAWTC 1 cut(s) 1157
Tru1I TTAA 3 cut(s) 507, 636, 789
Tru9I TTAA 3 cut(s) 507, 636, 789
TscAI CASTG 3 cut(s) 478, 800, 820
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 2 cut(s) 648, 671
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 9 cut(s) 506, 541, 569, 698, 728, 812, 930, 972, 1127
TspRI CASTG 3 cut(s) 478, 800, 820
VpaK11BI GGWCC 1 cut(s) 122
VspI ATTAAT 1 cut(s) 507
XapI RAATTY 1 cut(s) 131
XmiI GTMKAC 2 cut(s) 138, 769
XmnI GAANNNNTTC 3 cut(s) 662, 719, 1118
XspI CTAG 4 cut(s) 24, 603, 804, 978
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.