MD17G1085800.v1.1

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0005947
Physical Location & Seq
Forward (+)
7044909 .. 7045730
822 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1085800.v1.1.491

Sequence Viewer

Length: 822 bp
ATGGCTTGCACATTTAAGGTCTTAGAGCAACGCAAGGTCTCTCCACCAAAAGATTCAGTTCCTACAACCTCTCTTCCCCTCATATTTTTGGACATACCTTGGCTTGGCTTGCTACAACCTGTCCAACGCCTCTACTTCTATGAATCCCCCCACCTATCTCACCATTTCATACAAATTCTCCTTCCATCACTTAAACACTCTCTCTCCCTCACTCTCCAGCACTTCTTCCCGCTCTCTGGAAACCTCACTTGTCCCCCTCCTCCCCCCATGCCTTACACCCACTACACCGCCAACGAGTCTTCTGTCAAATTCACCATTGTTGAGTCCACTGCCAACTTCGCCCATCTTATAGGCAACCACCTAAGACATATCCAAGAATTCCATCACCTTGTTCCCCATTTGCCCAATTTTAATAATTTGGACTCTTATTCCAATTCCAATGACACAACCACATTTGTACTTCCTATTCTTGCATTACAAGCAACAATTTCCCCAAACTCTGGCTTATGCATTTCCATAGCGTATCGCCACGTTGTGGATGGACGGACTGCTAATCATTTCATGAAATGTTGGGCTTCCGTTTATAAGTCAGGAGGAGACTTATCTTGTATACATGAATCACCTCCTATCTATGATAGAGATTTTATCAGAACCCCAAAAGATTATGAGCCGATTTTGTTCAATCAATACATCGGTTTGAGATCAACATGGAAAAATCATGACAAGGGCAAGCCTTCTTCCATTTTCGTAGACAATTTTCGTGCAACATTTGTACTAGGAAGAGAAAATATTCAAGCCCTGAAACAGTTTGTGTTGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

274

Amino Acids

31.08

Weight (kDa)

8.55

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 15 - 219 1.5e-14 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
AccB7I CCANNNNNTGG 2 cut(s) 500, 535
AccBSI CCGCTC 1 cut(s) 232
AccI GTMKAC 2 cut(s) 610, 750
AciI CCGC 2 cut(s) 230, 288
AcsI RAATTY 3 cut(s) 174, 308, 377
AdeI CACNNNGTG 1 cut(s) 535
AfaI GTAC 2 cut(s) 459, 774
AfiI CCNNNNNNNGG 4 cut(s) 104, 236, 500, 535
AgsI TTSAA 2 cut(s) 682, 794
Alw26I GTCTC 2 cut(s) 43, 591
ApoI RAATTY 3 cut(s) 174, 308, 377
Asp700I GAANNNNTTC 1 cut(s) 789
AsuHPI GGTGA 4 cut(s) 152, 304, 377, 612
BbsI GAAGAC 1 cut(s) 291
BccI CCATC 4 cut(s) 193, 351, 390, 533
BcoDI GTCTC 2 cut(s) 43, 591
BfaI CTAG 1 cut(s) 776
BpiI GAAGAC 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 200
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 98
BsaXI ACNNNNNCTCC 4 cut(s) 162, 188, 192, 218
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 236, 500, 535
BseDI CCNNGG 1 cut(s) 98
BseGI GGATG 1 cut(s) 544
BseLI CCNNNNNNNGG 4 cut(s) 104, 236, 500, 535
BseRI GAGGAG 2 cut(s) 249, 609
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 4 cut(s) 104, 236, 500, 535
BsmAI GTCTC 2 cut(s) 43, 591
BsmFI GGGAC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 701
BspACI CCGC 2 cut(s) 230, 288
BspHI TCATGA 2 cut(s) 561, 718
BspTNI GGTCTC 1 cut(s) 43
BsrBI CCGCTC 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 1 cut(s) 701
BssNAI GTATAC 1 cut(s) 611
BssT1I CCWWGG 1 cut(s) 98
Bst1107I GTATAC 1 cut(s) 611
Bst4CI ACNGT 1 cut(s) 807
Bst6I CTCTTC 2 cut(s) 78, 775
BstC8I GCNNGC 3 cut(s) 7, 110, 731
BstDEI CTNAG 2 cut(s) 22, 362
BstF5I GGATG 1 cut(s) 544
BstKTI GATC 1 cut(s) 704
BstMAI GTCTC 2 cut(s) 43, 591
BstMBI GATC 1 cut(s) 701
BstMWI GCNNNNNNNGC 3 cut(s) 109, 338, 479
BstV2I GAAGAC 1 cut(s) 291
BstZ17I GTATAC 1 cut(s) 611
BtsCI GGATG 1 cut(s) 544
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 3 cut(s) 7, 110, 731
CciI TCATGA 2 cut(s) 561, 718
Csp6I GTAC 2 cut(s) 458, 773
CviAII CATG 5 cut(s) 268, 562, 614, 708, 719
CviJI RGCY 8 cut(s) 5, 103, 108, 504, 575, 670, 733, 797
CviKI_1 RGCY 8 cut(s) 5, 103, 108, 504, 575, 670, 733, 797
CviQI GTAC 2 cut(s) 458, 773
DdeI CTNAG 2 cut(s) 22, 362
DpnI GATC 1 cut(s) 703
DpnII GATC 1 cut(s) 701
DraIII CACNNNGTG 1 cut(s) 535
Eam1104I CTCTTC 2 cut(s) 78, 775
EarI CTCTTC 2 cut(s) 78, 775
Eco130I CCWWGG 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 5 cut(s) 271, 565, 617, 711, 722
FaqI GGGAC 1 cut(s) 237
FatI CATG 5 cut(s) 267, 561, 613, 707, 718
FauI CCCGC 1 cut(s) 237
FblI GTMKAC 2 cut(s) 610, 750
FokI GGATG 1 cut(s) 551
FspBI CTAG 1 cut(s) 776
GsuI CTGGAG 1 cut(s) 200
Hin1II CATG 5 cut(s) 271, 565, 617, 711, 722
HincII GTYRAC 1 cut(s) 816
HindII GTYRAC 1 cut(s) 816
HinfI GANTC 6 cut(s) 53, 143, 296, 323, 422, 617
HphI GGTGA 4 cut(s) 152, 304, 377, 612
Hpy166II GTNNAC 4 cut(s) 327, 611, 751, 816
Hpy188I TCNGA 1 cut(s) 650
Hpy188III TCNNGA 4 cut(s) 237, 562, 591, 719
Hpy8I GTNNAC 4 cut(s) 327, 611, 751, 816
HpyAV CCTTC 2 cut(s) 191, 744
HpyCH4III ACNGT 1 cut(s) 807
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 4 cut(s) 9, 473, 510, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 338, 479
HpyF3I CTNAG 2 cut(s) 22, 362
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 5 cut(s) 271, 565, 617, 711, 722
Kzo9I GATC 1 cut(s) 701
LpnPI CCDG 6 cut(s) 132, 222, 230, 486, 576, 812
MaeI CTAG 1 cut(s) 776
MaeII ACGT 1 cut(s) 531
MalI GATC 1 cut(s) 703
MbiI CCGCTC 1 cut(s) 232
MboI GATC 1 cut(s) 701
MboII GAAGA 5 cut(s) 65, 217, 291, 729, 792
MluCI AATT 8 cut(s) 174, 308, 377, 406, 415, 433, 486, 754
MlyI GAGTC 3 cut(s) 305, 332, 416
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 9 cut(s) 79, 89, 140, 218, 254, 267, 270, 587, 633
Mph1103I ATGCAT 1 cut(s) 512
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 4 cut(s) 15, 192, 411, 820
MwoI GCNNNNNNNGC 3 cut(s) 109, 338, 479
NdeII GATC 1 cut(s) 701
NlaIII CATG 5 cut(s) 271, 565, 617, 711, 722
NsiI ATGCAT 1 cut(s) 512
PagI TCATGA 2 cut(s) 561, 718
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 3 cut(s) 53, 143, 617
PflMI CCANNNNNTGG 2 cut(s) 500, 535
PleI GAGTC 3 cut(s) 304, 331, 416
PpsI GAGTC 3 cut(s) 304, 331, 416
PsiI TTATAA 1 cut(s) 585
RsaI GTAC 2 cut(s) 459, 774
RsaNI GTAC 2 cut(s) 458, 773
SaqAI TTAA 4 cut(s) 15, 192, 411, 820
Sau3AI GATC 1 cut(s) 701
SchI GAGTC 3 cut(s) 305, 332, 416
Sse9I AATT 8 cut(s) 174, 308, 377, 406, 415, 433, 486, 754
SsiI CCGC 2 cut(s) 230, 288
SspI AATATT 1 cut(s) 790
SspMI CTAG 1 cut(s) 776
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 807
TaiI ACGT 1 cut(s) 534
TasI AATT 8 cut(s) 174, 308, 377, 406, 415, 433, 486, 754
TatI WGTACW 2 cut(s) 457, 772
TfiI GAWTC 3 cut(s) 53, 143, 617
Tru1I TTAA 4 cut(s) 15, 192, 411, 820
Tru9I TTAA 4 cut(s) 15, 192, 411, 820
TscAI CASTG 1 cut(s) 334
TspDTI ATGAA 5 cut(s) 156, 157, 550, 578, 630
TspGWI ACGGA 2 cut(s) 559, 568
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 2 cut(s) 500, 535
XapI RAATTY 3 cut(s) 174, 308, 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 536
XmiI GTMKAC 2 cut(s) 610, 750
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 1 cut(s) 776
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.