FvH4_7g00870

Anthocyanin 5-aromatic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005947
Physical Location & Seq
Forward (+)
1328848 .. 1332692
3845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00870.t1

Sequence Viewer

Length: 1212 bp
ATGAAATCTAGGTTTCACAAAGGTGACAGCGGCCTTGTGCTTCCCTGTCCAAGTAATGGAGAGATGGCGGTGATGTGGACTCAAAAATGGGTTATATTTTTAGGCAGATGCATCAGAATCCCAACCAAGATGTGTAAGAGGCATTGGGGCGAGGATGTCGAAACATGGTGCGACACTGGTTTGGCCGCAGGGAGGTGGTGGCTGTCGTTTAAAGGCGAGAGAGCCCACGCCAGAGACGGTTCATTCCTCAGCCCACAGTCATTTAGAACGTTTAACAATTTCATCAAGACTTGGGCCTCATTTTCTAGACATTCACTCCCTGCCAAGTCTATCTTGCCCTCTTATGATCGTAAGGCCATTGTTGATCTGTATGCGTTGGAGGGTATCTTCTTGAAGGAATGGTGGAAGCGAATTTCTTCACGAGGAGCAGTTATAGGTAATACTAAAAGTGTCATGTTAGATCCAAAGAGCATGGTTCGGGAAACTTTTTTGATGGACTTGACCAGCATGGAGAGGGTAAAAAAGTGGATTGTTTATCAATGCAACAAGGGAAATGAGTCACTACCTGTACATTTATCTGCTTATGTCCTAACATGTGCGTTTGTGTGGATTTCTTTGATTAAAAGCCAAGAAAAGTACTTCAATTACAAGTCATCTGGTCAGGATCAAAATTATTTTGGGTTTGTTGTGAGTGGTTTAACCTGTTTGAACCATCTGGTACCCTCAACGTATGTCGGCAATTACGTAGGGTTTGGCCGGGCGGCAGCGATAAGGAGTGAGTTGTTGGGGGACAATGGAATTGTTATTGCAGCTAGAGCAATTGGAAACACGGTTAAGAAATTAGACAAGACTATTTTTGGAGGGGCAAAGAAATGGATTTCGGATTGTAAGGTTAAGTTTGAGTTGGAGCTCCATGTTATGGTTTCTGGATCACCAAAAATGGATCTTTATGAAACAGATTTTGGGCTGGGGAGACCCAAAAAGATAGAGGACATTGGAATTGATGGTATGAAAGCTATTGCACTGACTCAGAGTAGAGATGTATCAGGTGGCATTGAGGACGAGTCGGACTATGTCTATGTATTCAAAAGCGGCGAGTTCCTTACTTTGTCAAATGGTCTCTACCCTAAACCTTCTAGTGGTAGGGTGAAGTTAAGTGTCGTTGGATCTATTTTATGGTGGCAACAAGTGAGAAAGCTGTGCTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

404

Amino Acids

45.59

Weight (kDa)

9.44

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 91 - 333 1.4e-09 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 718
AccB1I GGYRCC 1 cut(s) 718
AccB7I CCANNNNNTGG 2 cut(s) 56, 919
AciI CCGC 5 cut(s) 30, 68, 186, 761, 1092
AclI AACGTT 1 cut(s) 269
AclWI GGATC 5 cut(s) 455, 672, 937, 951, 1174
AcoI YGGCCR 2 cut(s) 183, 754
AcsI RAATTY 1 cut(s) 411
AfaI GTAC 3 cut(s) 570, 638, 720
AfiI CCNNNNNNNGG 4 cut(s) 56, 192, 919, 1139
AflIII ACRYGT 1 cut(s) 593
AgsI TTSAA 4 cut(s) 394, 643, 709, 1087
AjuI GAANNNNNNNTTGG 2 cut(s) 945, 977
AleI CACNNNNGTG 1 cut(s) 21
AluBI AGCT 4 cut(s) 812, 910, 1016, 1198
AluI AGCT 4 cut(s) 812, 910, 1016, 1198
Alw21I GWGCWC 1 cut(s) 912
Alw26I GTCTC 3 cut(s) 228, 967, 1124
AlwI GGATC 5 cut(s) 455, 672, 937, 951, 1174
AoxI GGCC 5 cut(s) 31, 183, 294, 354, 754
ApeKI GCWGC 2 cut(s) 764, 809
ApoI RAATTY 1 cut(s) 411
Asp700I GAANNNNTTC 1 cut(s) 415
Asp718I GGTACC 1 cut(s) 718
AspS9I GGNCC 1 cut(s) 294
AsuC2I CCSGG 1 cut(s) 758
AsuHPI GGTGA 4 cut(s) 35, 82, 924, 1159
BanI GGYRCC 1 cut(s) 718
BanII GRGCYC 2 cut(s) 226, 912
BauI CACGAG 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 912
BbvCI CCTCAGC 1 cut(s) 248
BbvI GCAGC 2 cut(s) 776, 821
BccI CCATC 4 cut(s) 58, 487, 720, 998
BcnI CCSGG 1 cut(s) 758
BcoDI GTCTC 3 cut(s) 228, 967, 1124
BfaI CTAG 4 cut(s) 9, 306, 813, 1137
BisI GCNGC 6 cut(s) 31, 186, 762, 765, 810, 1093
BlsI GCNGC 6 cut(s) 32, 187, 763, 766, 811, 1094
BmcAI AGTACT 1 cut(s) 638
Bme1390I CCNGG 1 cut(s) 758
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 720
BmrFI CCNGG 1 cut(s) 758
BmsI GCATC 2 cut(s) 98, 120
Bpu10I CCTNAGC 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 758
BsaAI YACGTR 1 cut(s) 745
BsaI GGTCTC 2 cut(s) 967, 1124
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 192, 919, 1139
Bse1I ACTGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 4 cut(s) 56, 192, 919, 1139
BseMII CTCAG 2 cut(s) 262, 1043
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 438
BseXI GCAGC 2 cut(s) 776, 821
BseYI CCCAGC 1 cut(s) 967
BshFI GGCC 5 cut(s) 33, 185, 296, 356, 756
BshNI GGYRCC 1 cut(s) 718
BsiHKAI GWGCWC 1 cut(s) 912
BsiSI CCGG 1 cut(s) 757
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 4 cut(s) 56, 192, 919, 1139
BsmAI GTCTC 3 cut(s) 228, 967, 1124
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 803
BsnI GGCC 5 cut(s) 33, 185, 296, 356, 756
Bso31I GGTCTC 2 cut(s) 967, 1124
Bsp1286I GDGCHC 2 cut(s) 226, 912
Bsp1407I TGTACA 1 cut(s) 568
Bsp143I GATC 7 cut(s) 346, 364, 460, 664, 929, 943, 1166
BspACI CCGC 5 cut(s) 30, 68, 186, 761, 1092
BspANI GGCC 5 cut(s) 33, 185, 296, 356, 756
BspCNI CTCAG 2 cut(s) 261, 1042
BspLI GGNNCC 1 cut(s) 720
BspPI GGATC 5 cut(s) 455, 672, 937, 951, 1174
BspT107I GGYRCC 1 cut(s) 718
BspTNI GGTCTC 2 cut(s) 967, 1124
BsrGI TGTACA 1 cut(s) 568
BsrI ACTGG 1 cut(s) 181
BssMI GATC 7 cut(s) 346, 364, 460, 664, 929, 943, 1166
BssSI CACGAG 1 cut(s) 420
Bst2BI CACGAG 1 cut(s) 420
Bst4CI ACNGT 3 cut(s) 239, 258, 832
BstAUI TGTACA 1 cut(s) 568
BstBAI YACGTR 1 cut(s) 745
BstDEI CTNAG 2 cut(s) 248, 1029
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 7 cut(s) 349, 367, 463, 667, 932, 946, 1169
BstMAI GTCTC 3 cut(s) 228, 967, 1124
BstMBI GATC 7 cut(s) 346, 364, 460, 664, 929, 943, 1166
BstMWI GCNNNNNNNGC 1 cut(s) 815
BstNSI RCATGY 1 cut(s) 597
BstSCI CCNGG 1 cut(s) 756
BstSNI TACGTA 1 cut(s) 745
BstV1I GCAGC 2 cut(s) 776, 821
BstX2I RGATCY 3 cut(s) 460, 943, 1166
BstYI RGATCY 3 cut(s) 460, 943, 1166
BsuRI GGCC 5 cut(s) 33, 185, 296, 356, 756
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 2 cut(s) 174, 1022
Cfr13I GGNCC 1 cut(s) 294
Csp6I GTAC 3 cut(s) 569, 637, 719
CviAII CATG 6 cut(s) 165, 454, 472, 508, 594, 914
CviQI GTAC 3 cut(s) 569, 637, 719
DdeI CTNAG 2 cut(s) 248, 1029
DpnI GATC 7 cut(s) 348, 366, 462, 666, 931, 945, 1168
DpnII GATC 7 cut(s) 346, 364, 460, 664, 929, 943, 1166
DraI TTTAAA 1 cut(s) 211
EaeI YGGCCR 2 cut(s) 183, 754
Ecl136II GAGCTC 1 cut(s) 910
Eco105I TACGTA 1 cut(s) 745
Eco24I GRGCYC 2 cut(s) 226, 912
Eco31I GGTCTC 2 cut(s) 967, 1124
Eco53kI GAGCTC 1 cut(s) 910
EcoICRI GAGCTC 1 cut(s) 910
EcoT22I ATGCAT 1 cut(s) 113
EcoT38I GRGCYC 2 cut(s) 226, 912
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 6 cut(s) 168, 457, 475, 511, 597, 917
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 1 cut(s) 803
FatI CATG 6 cut(s) 164, 453, 471, 507, 593, 913
Fnu4HI GCNGC 6 cut(s) 31, 186, 762, 765, 810, 1093
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 2 cut(s) 226, 912
Fsp4HI GCNGC 6 cut(s) 31, 186, 762, 765, 810, 1093
FspBI CTAG 4 cut(s) 9, 306, 813, 1137
GluI GCNGC 6 cut(s) 31, 186, 762, 765, 810, 1093
GsaI CCCAGC 1 cut(s) 971
HaeIII GGCC 5 cut(s) 33, 185, 296, 356, 756
HapII CCGG 1 cut(s) 757
Hin1II CATG 6 cut(s) 168, 457, 475, 511, 597, 917
HinfI GANTC 5 cut(s) 79, 117, 557, 1027, 1064
HpaII CCGG 1 cut(s) 757
HphI GGTGA 4 cut(s) 35, 82, 924, 1159
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 4 cut(s) 116, 883, 1032, 1069
Hpy188III TCNNGA 7 cut(s) 286, 306, 391, 420, 479, 662, 927
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 388, 1143
HpyCH4III ACNGT 3 cut(s) 239, 258, 832
HpyCH4IV ACGT 3 cut(s) 269, 728, 744
HpyCH4V TGCA 4 cut(s) 111, 543, 809, 1022
HpyF10VI GCNNNNNNNGC 1 cut(s) 815
HpyF3I CTNAG 2 cut(s) 248, 1029
HpySE526I ACGT 3 cut(s) 269, 728, 744
Hsp92II CATG 6 cut(s) 168, 457, 475, 511, 597, 917
KpnI GGTACC 1 cut(s) 722
Kzo9I GATC 7 cut(s) 346, 364, 460, 664, 929, 943, 1166
LmnI GCTCC 3 cut(s) 425, 907, 915
Lsp1109I GCAGC 2 cut(s) 776, 821
LweI GCATC 2 cut(s) 98, 120
MaeI CTAG 4 cut(s) 9, 306, 813, 1137
MaeII ACGT 3 cut(s) 269, 728, 744
MaeIII GTNAC 2 cut(s) 23, 558
MalI GATC 7 cut(s) 348, 366, 462, 666, 931, 945, 1168
MboI GATC 7 cut(s) 346, 364, 460, 664, 929, 943, 1166
MboII GAAGA 2 cut(s) 379, 408
MfeI CAATTG 1 cut(s) 819
MflI RGATCY 3 cut(s) 460, 943, 1166
MhlI GDGCHC 2 cut(s) 226, 912
MluCI AATT 9 cut(s) 277, 411, 643, 670, 739, 798, 819, 839, 999
MlyI GAGTC 4 cut(s) 73, 566, 1021, 1073
MmeI TCCRAC 4 cut(s) 357, 885, 1047, 1144
Mph1103I ATGCAT 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 415
MseI TTAA 7 cut(s) 210, 273, 621, 698, 834, 894, 1154
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 1 cut(s) 757
MspR9I CCNGG 1 cut(s) 758
MunI CAATTG 1 cut(s) 819
MwoI GCNNNNNNNGC 1 cut(s) 815
NciI CCSGG 1 cut(s) 758
NdeII GATC 7 cut(s) 346, 364, 460, 664, 929, 943, 1166
NlaIII CATG 6 cut(s) 168, 457, 475, 511, 597, 917
NlaIV GGNNCC 1 cut(s) 720
NmuCI GTSAC 2 cut(s) 23, 558
NsiI ATGCAT 1 cut(s) 113
NspI RCATGY 1 cut(s) 597
OliI CACNNNNGTG 1 cut(s) 21
PciI ACATGT 1 cut(s) 593
PcsI WCGNNNNNNNCGW 1 cut(s) 741
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 1 cut(s) 117
PflFI GACNNNGTC 1 cut(s) 1073
PflMI CCANNNNNTGG 2 cut(s) 56, 919
PkrI GCNGC 6 cut(s) 32, 187, 763, 766, 811, 1094
PleI GAGTC 4 cut(s) 73, 565, 1021, 1072
PpsI GAGTC 4 cut(s) 73, 565, 1021, 1072
Ppu21I YACGTR 1 cut(s) 745
PscI ACATGT 1 cut(s) 593
Psp124BI GAGCTC 1 cut(s) 912
Psp1406I AACGTT 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 967
PspN4I GGNNCC 1 cut(s) 720
PspPI GGNCC 1 cut(s) 294
PsuI RGATCY 3 cut(s) 460, 943, 1166
PsyI GACNNNGTC 1 cut(s) 1073
RsaI GTAC 3 cut(s) 570, 638, 720
RsaNI GTAC 3 cut(s) 569, 637, 719
RseI CAYNNNNRTG 1 cut(s) 21
SacI GAGCTC 1 cut(s) 912
SaqAI TTAA 7 cut(s) 210, 273, 621, 698, 834, 894, 1154
SatI GCNGC 6 cut(s) 31, 186, 762, 765, 810, 1093
Sau3AI GATC 7 cut(s) 346, 364, 460, 664, 929, 943, 1166
Sau96I GGNCC 1 cut(s) 294
ScaI AGTACT 1 cut(s) 638
SchI GAGTC 4 cut(s) 73, 566, 1021, 1073
ScrFI CCNGG 1 cut(s) 758
SduI GDGCHC 2 cut(s) 226, 912
SfaNI GCATC 2 cut(s) 98, 120
SmiMI CAYNNNNRTG 1 cut(s) 21
SnaBI TACGTA 1 cut(s) 745
Sse9I AATT 9 cut(s) 277, 411, 643, 670, 739, 798, 819, 839, 999
SsiI CCGC 5 cut(s) 30, 68, 186, 761, 1092
SspMI CTAG 4 cut(s) 9, 306, 813, 1137
SstI GAGCTC 1 cut(s) 912
StyD4I CCNGG 1 cut(s) 756
TaaI ACNGT 3 cut(s) 239, 258, 832
TaiI ACGT 3 cut(s) 272, 731, 747
TaqI TCGA 1 cut(s) 159
TasI AATT 9 cut(s) 277, 411, 643, 670, 739, 798, 819, 839, 999
TatI WGTACW 2 cut(s) 568, 636
TauI GCSGC 4 cut(s) 33, 188, 764, 1095
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 7 cut(s) 210, 273, 621, 698, 834, 894, 1154
Tru9I TTAA 7 cut(s) 210, 273, 621, 698, 834, 894, 1154
TscAI CASTG 2 cut(s) 181, 1029
TseFI GTSAC 2 cut(s) 23, 558
TseI GCWGC 2 cut(s) 764, 809
Tsp45I GTSAC 2 cut(s) 23, 558
TspDTI ATGAA 5 cut(s) 17, 231, 271, 966, 1025
TspRI CASTG 2 cut(s) 181, 1029
Tth111I GACNNNGTC 1 cut(s) 1073
Van91I CCANNNNNTGG 2 cut(s) 56, 919
XapI RAATTY 1 cut(s) 411
XbaI TCTAGA 1 cut(s) 305
XceI RCATGY 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 4 cut(s) 9, 306, 813, 1137
ZrmI AGTACT 1 cut(s) 638
Zsp2I ATGCAT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.