MD17G1085900.v1.1

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0005947
Physical Location & Seq
Forward (+)
7046070 .. 7046554
485 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1085900.v1.1.491

Sequence Viewer

Length: 303 bp
ATGGTTCCGTCTCGAGGGAAGTTAGTTGTAGCAGAAAGTGGTGTAGCCATTGCTAGATCGCCAACGTTGGGAGTTTATGGGACTGATTTTGGATGGGGAAGAGCAAAGAAAGTGGAGGTGGTTCACTTTGTTAATTCAACAGTTTTTTCTCTTGCAGAGAGTGGAGATGAGGAGGAGGACGGCATTGAGGTTGGCTTGGCGCTACCAAGGGCTACAATGGATGCATTTACTTCTTTGTTTGAACAAGGATTTTTATATGTATGGGGGCTTATGGTGCTGTCGTTAGTGCCTCATGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

101

Amino Acids

10.66

Weight (kDa)

4.8

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 15 - 81 4.7e-07 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 65
AfiI CCNNNNNNNGG 3 cut(s) 14, 68, 296
AgsI TTSAA 2 cut(s) 138, 242
Alw26I GTCTC 1 cut(s) 15
Ama87I CYCGRG 1 cut(s) 12
AspLEI GCGC 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 12
BccI CCATC 1 cut(s) 87
BceAI ACGGC 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 211
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 68, 296
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 2 cut(s) 98, 226
BseLI CCNNNNNNNGG 3 cut(s) 14, 68, 296
BseMI GCAATG 1 cut(s) 48
BseRI GAGGAG 2 cut(s) 185, 188
BsiHKCI CYCGRG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 3 cut(s) 14, 68, 296
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 12
Bsp143I GATC 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 6
BspQI GCTCTTC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 94
BstF5I GGATG 2 cut(s) 98, 226
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 1 cut(s) 59
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 1 cut(s) 274
BtsCI GGATG 2 cut(s) 98, 226
CfoI GCGC 1 cut(s) 202
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
CviAII CATG 1 cut(s) 293
CviJI RGCY 4 cut(s) 47, 195, 212, 268
CviKI_1 RGCY 4 cut(s) 47, 195, 212, 268
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 206
EcoT22I ATGCAT 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 206
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 1 cut(s) 296
FaiI YATR 6 cut(s) 78, 256, 258, 262, 272, 294
FaqI GGGAC 1 cut(s) 94
FatI CATG 1 cut(s) 292
FokI GGATG 2 cut(s) 105, 233
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 203
HhaI GCGC 1 cut(s) 202
Hin1II CATG 1 cut(s) 296
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 155, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 1 cut(s) 296
HspAI GCGC 1 cut(s) 200
Kzo9I GATC 1 cut(s) 56
LguI GCTCTTC 1 cut(s) 94
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 65
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MboII GAAGA 1 cut(s) 111
MluCI AATT 1 cut(s) 133
MnlI CCTC 7 cut(s) 8, 109, 163, 166, 169, 181, 300
Mph1103I ATGCAT 1 cut(s) 226
MseI TTAA 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 274
NdeII GATC 1 cut(s) 56
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 94
Psp1406I AACGTT 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 6
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 132
Sau3AI GATC 1 cut(s) 56
SetI ASST 3 cut(s) 68, 120, 192
SfaNI GCATC 1 cut(s) 211
Sfr274I CTCGAG 1 cut(s) 12
SgeI CNNG 7 cut(s) 24, 26, 66, 164, 208, 219, 257
SlaI CTCGAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 1 cut(s) 133
SspMI CTAG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 13
TasI AATT 1 cut(s) 133
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
XhoI CTCGAG 1 cut(s) 12
XspI CTAG 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.