RchiOBHm_Chr1g0315741

Anthocyanin 5-aromatic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0005947
Physical Location & Seq
Forward (+)
2774101 .. 2775785
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54624

Sequence Viewer

Length: 1470 bp
ATGAATATTAAACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGGTTTCCTCCATGGCTCAACTCTCCAAACTCAATGTTATTGAGCAATGCCAAGTCTCTACCCCGCAAAACTCATCTACTCCACAAGCTTGTTATCATCTCCCTCTAACCTTCCTTGACATACCATGGCTCTTCTTCTCTCCAAGCCAACCTCTTTTCTTCTATGAATTCCCATATCCCACTTCTCATTTCACATCGATCACTCTACCAAATCTCAAGCACTCTCTCTCCCTTACTCTCCAACTCTTTTACCCTTTTGCCGGAGCCCTACTGGCCCGCCCCGAACCCGGAAAACCCGAGCTCGTCTACTCCCAAGGTGACTCGGTCTCATTCACCGTCGTCGAGTCAAATGCAGACTTCGGCTATCTTTCCGGGAATTACCAAAGATATGTTGAAGAGTTCAACACACTTGTACCTCAACTGGCTTCAACTGGTGCACCTAGTAGTAACTGTGCTGCCAAAATTTCACTGTTGAGCGTTCAAATTACATTGTTCCCAAATTGTGGCATTTGCATTGGACTTGCATATCATCATGTTGTTGCTGACAAGAGAACGTTCAACAATTTCATCAAGACTTGGGCCTCATTATCTAGACATTCATTTTTCCCCACCAAGTCTATCTTGCCCTCTTATGATCGTAAGGCCATTGTTGATCCGTATAAGTTGGAGGGTATCTTCTTGAAGGAATGGTGGAAGCGAATTTCTTCTCAAGGAGCAATTATAGGTAATACTAAAACTGCCATGTTAGATCCAACGAGCATGGTTCGGGCAACTTTTTTGATGGACTTGACTCGCATGGAGAGGATCAAAAATTGGATTGTTAATCTATGCAACAAGGGAAATGAGCCACTACCGGTACATTTATCTGCTTATGTCCTAACTTGTGCGTTTGTATGGATTTCTTTGATTAAAAGCCAAGAAAAATACTTCAATTACAAGTGTTGTGGTCAGAATCCGAATTATTTTGGGTTTATTGCGGGCGGGTTAACCCGTTTGAACCATCCGGTACCCTCAACGTATGTCGGTAATTGCGTAGGGTTTGGCCGGGCAGCGGCGATAAGGAGTGAGTTGTTGGGGGACAATGGAATTGTTGTTGCGGCAAGAGCAATTGGAAATACGGTTAAGAAGTTAGACAAGGTTATTTTTGGAGGGGCGGAGAAATGGATTTCGGATTGGAAGATTATGTTCGAGTCGGACCTCCATGTTATGGTATCAGGATCACCGAAAGTGGATCTTTATGAAACGGATTTTGGGTTGGGGAGACCCAAAAAGATAGAGGACGTTGGAGTTGATGGTACTAAAGCTATTGCACTGACTGAGAGTAGAGATGTATCAGGTGGCATTGAGGTTGGATTAGTGCTACCCAAGCCTCAAATGGATTATTTCTCAACTTATTTCATTGAGGGACTGAATGCTACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

489

Amino Acids

54.17

Weight (kDa)

8.53

Isoelectric Point (pI)

32.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 41 - 479 4.7e-37 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1051
AccB1I GGYRCC 1 cut(s) 1051
AccB7I CCANNNNNTGG 2 cut(s) 548, 1252
AccI GTMKAC 1 cut(s) 351
AciI CCGC 7 cut(s) 110, 322, 1022, 1026, 1097, 1142, 1199
AclI AACGTT 1 cut(s) 599
AclWI GGATC 5 cut(s) 692, 788, 857, 1270, 1284
AcoI YGGCCR 1 cut(s) 1087
AcsI RAATTY 3 cut(s) 212, 507, 744
AfaI GTAC 4 cut(s) 459, 903, 1053, 1342
AfiI CCNNNNNNNGG 5 cut(s) 305, 332, 548, 1096, 1252
AgeI ACCGGT 1 cut(s) 898
AgsI TTSAA 8 cut(s) 440, 448, 474, 527, 604, 727, 976, 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 1278, 1310
AluBI AGCT 3 cut(s) 134, 346, 1349
AluI AGCT 3 cut(s) 134, 346, 1349
Alw21I GWGCWC 2 cut(s) 348, 484
Alw26I GTCTC 3 cut(s) 106, 376, 1300
Alw44I GTGCAC 1 cut(s) 480
AlwI GGATC 5 cut(s) 692, 788, 857, 1270, 1284
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 4 cut(s) 318, 624, 687, 1087
ApaLI GTGCAC 1 cut(s) 480
ApeKI GCWGC 2 cut(s) 500, 1094
ApoI RAATTY 3 cut(s) 212, 507, 744
AsiGI ACCGGT 1 cut(s) 898
Asp700I GAANNNNTTC 1 cut(s) 748
Asp718I GGTACC 1 cut(s) 1051
AspS9I GGNCC 3 cut(s) 319, 624, 1240
AsuC2I CCSGG 3 cut(s) 333, 418, 1091
AsuHPI GGTGA 3 cut(s) 370, 374, 1257
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 1 cut(s) 1240
BaeGI GKGCMC 1 cut(s) 484
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BanI GGYRCC 1 cut(s) 1051
BanII GRGCYC 2 cut(s) 313, 348
Bbv12I GWGCWC 2 cut(s) 348, 484
BbvI GCAGC 2 cut(s) 487, 1106
BccI CCATC 3 cut(s) 820, 1053, 1331
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BcnI CCSGG 3 cut(s) 333, 418, 1091
BcoDI GTCTC 3 cut(s) 106, 376, 1300
BfaI CTAG 2 cut(s) 486, 636
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 4 cut(s) 501, 1095, 1098, 1143
BlsI GCNGC 4 cut(s) 502, 1096, 1099, 1144
Bme1390I CCNGG 3 cut(s) 333, 418, 1091
Bme18I GGWCC 1 cut(s) 1240
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 3 cut(s) 319, 624, 1240
BmiI GGNNCC 2 cut(s) 310, 1053
BmrFI CCNGG 3 cut(s) 333, 418, 1091
BpuEI CTTGAG 2 cut(s) 245, 738
BpuMI CCSGG 3 cut(s) 333, 418, 1091
Bsa29I ATCGAT 1 cut(s) 242
BsaI GGTCTC 2 cut(s) 376, 1300
BsaJI CCNNGG 3 cut(s) 57, 170, 358
BsaWI WCCGGW 2 cut(s) 898, 1048
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 5 cut(s) 305, 332, 548, 1096, 1252
Bse118I RCCGGY 1 cut(s) 898
Bse1I ACTGG 3 cut(s) 321, 471, 481
Bse3DI GCAATG 1 cut(s) 98
BseCI ATCGAT 1 cut(s) 242
BseDI CCNNGG 3 cut(s) 57, 170, 358
BseGI GGATG 1 cut(s) 1045
BseLI CCNNNNNNNGG 5 cut(s) 305, 332, 548, 1096, 1252
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 1353
BseNI ACTGG 3 cut(s) 321, 471, 481
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 2 cut(s) 487, 1106
BshFI GGCC 4 cut(s) 320, 626, 689, 1089
BshNI GGYRCC 1 cut(s) 1051
BshTI ACCGGT 1 cut(s) 898
BshVI ATCGAT 1 cut(s) 242
BsiHKAI GWGCWC 2 cut(s) 348, 484
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 6 cut(s) 306, 333, 417, 899, 1049, 1090
BslFI GGGAC 2 cut(s) 1136, 1464
BslI CCNNNNNNNGG 5 cut(s) 305, 332, 548, 1096, 1252
BsmAI GTCTC 3 cut(s) 106, 376, 1300
BsmFI GGGAC 2 cut(s) 1136, 1464
BsmI GAATGC 1 cut(s) 1462
BsnI GGCC 4 cut(s) 320, 626, 689, 1089
Bso31I GGTCTC 2 cut(s) 376, 1300
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 3 cut(s) 313, 348, 484
Bsp143I GATC 7 cut(s) 243, 679, 697, 793, 849, 1262, 1276
Bsp19I CCATGG 2 cut(s) 57, 170
BspACI CCGC 7 cut(s) 110, 322, 1022, 1026, 1097, 1142, 1199
BspANI GGCC 4 cut(s) 320, 626, 689, 1089
BspCNI CTCAG 1 cut(s) 1354
BspDI ATCGAT 1 cut(s) 242
BspLI GGNNCC 2 cut(s) 310, 1053
BspPI GGATC 5 cut(s) 692, 788, 857, 1270, 1284
BspQI GCTCTTC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 1051
BspTNI GGTCTC 2 cut(s) 376, 1300
BsrDI GCAATG 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 898
BsrI ACTGG 3 cut(s) 321, 471, 481
BssAI RCCGGY 1 cut(s) 898
BssECI CCNNGG 3 cut(s) 57, 170, 358
BssMI GATC 7 cut(s) 243, 679, 697, 793, 849, 1262, 1276
BssT1I CCWWGG 3 cut(s) 57, 170, 358
Bst4CI ACNGT 4 cut(s) 382, 497, 516, 1165
Bst6I CTCTTC 2 cut(s) 182, 435
BstC8I GCNNGC 2 cut(s) 322, 1024
BstDEI CTNAG 1 cut(s) 1362
BstDSI CCRYGG 2 cut(s) 57, 170
BstF5I GGATG 1 cut(s) 1045
BstKTI GATC 7 cut(s) 246, 682, 700, 796, 852, 1265, 1279
BstMAI GTCTC 3 cut(s) 106, 376, 1300
BstMBI GATC 7 cut(s) 243, 679, 697, 793, 849, 1262, 1276
BstMWI GCNNNNNNNGC 3 cut(s) 317, 1148, 1411
BstSCI CCNGG 3 cut(s) 331, 416, 1089
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 2 cut(s) 487, 1106
BstX2I RGATCY 2 cut(s) 793, 1276
BstYI RGATCY 2 cut(s) 793, 1276
Bsu15I ATCGAT 1 cut(s) 242
BsuRI GGCC 4 cut(s) 320, 626, 689, 1089
BsuTUI ATCGAT 1 cut(s) 242
BtgI CCRYGG 2 cut(s) 57, 170
BtsCI GGATG 1 cut(s) 1045
BtsIMutI CAGTG 2 cut(s) 512, 1355
Cac8I GCNNGC 2 cut(s) 322, 1024
Cfr10I RCCGGY 1 cut(s) 898
Cfr13I GGNCC 3 cut(s) 319, 624, 1240
ClaI ATCGAT 1 cut(s) 242
Csp6I GTAC 4 cut(s) 458, 902, 1052, 1341
CspAI ACCGGT 1 cut(s) 898
CspCI CAANNNNNGTGG 2 cut(s) 970, 1005
CviAII CATG 8 cut(s) 58, 171, 578, 787, 805, 841, 1247, 1467
CviQI GTAC 4 cut(s) 458, 902, 1052, 1341
DdeI CTNAG 1 cut(s) 1362
DpnI GATC 7 cut(s) 245, 681, 699, 795, 851, 1264, 1278
DpnII GATC 7 cut(s) 243, 679, 697, 793, 849, 1262, 1276
EaeI YGGCCR 1 cut(s) 1087
Eam1104I CTCTTC 2 cut(s) 182, 435
EarI CTCTTC 2 cut(s) 182, 435
EciI GGCGGA 1 cut(s) 1214
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 3 cut(s) 57, 170, 358
Eco24I GRGCYC 2 cut(s) 313, 348
Eco31I GGTCTC 2 cut(s) 376, 1300
Eco47I GGWCC 1 cut(s) 1240
Eco53kI GAGCTC 1 cut(s) 346
Eco88I CYCGRG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 212
EcoT14I CCWWGG 3 cut(s) 57, 170, 358
EcoT38I GRGCYC 2 cut(s) 313, 348
ErhI CCWWGG 3 cut(s) 57, 170, 358
FaeI CATG 8 cut(s) 61, 174, 581, 790, 808, 844, 1250, 1470
FalI AAGNNNNNCTT 4 cut(s) 650, 682, 1263, 1295
FaqI GGGAC 2 cut(s) 1136, 1464
FatI CATG 8 cut(s) 57, 170, 577, 786, 804, 840, 1246, 1466
FauI CCCGC 4 cut(s) 117, 329, 1015, 1019
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 4 cut(s) 501, 1095, 1098, 1143
FokI GGATG 1 cut(s) 1032
FriOI GRGCYC 2 cut(s) 313, 348
Fsp4HI GCNGC 4 cut(s) 501, 1095, 1098, 1143
FspBI CTAG 2 cut(s) 486, 636
GluI GCNGC 4 cut(s) 501, 1095, 1098, 1143
HaeIII GGCC 4 cut(s) 320, 626, 689, 1089
HapII CCGG 6 cut(s) 306, 333, 417, 899, 1049, 1090
Hin1II CATG 8 cut(s) 61, 174, 581, 790, 808, 844, 1250, 1470
HincII GTYRAC 1 cut(s) 1032
HindII GTYRAC 1 cut(s) 1032
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 5 cut(s) 365, 389, 835, 997, 1235
HpaI GTTAAC 1 cut(s) 1032
HpaII CCGG 6 cut(s) 306, 333, 417, 899, 1049, 1090
HphI GGTGA 3 cut(s) 370, 374, 1257
Hpy166II GTNNAC 3 cut(s) 352, 482, 1032
Hpy188I TCNGA 4 cut(s) 996, 1002, 1216, 1240
Hpy188III TCNNGA 4 cut(s) 616, 636, 724, 1260
Hpy8I GTNNAC 3 cut(s) 352, 482, 1032
Hpy99I CGWCG 2 cut(s) 386, 389
HpyAV CCTTC 2 cut(s) 166, 721
HpyCH4III ACNGT 4 cut(s) 382, 497, 516, 1165
HpyCH4IV ACGT 3 cut(s) 599, 1061, 1326
HpyCH4V TGCA 6 cut(s) 398, 482, 558, 569, 876, 1355
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 1148, 1411
HpyF3I CTNAG 1 cut(s) 1362
HpySE526I ACGT 3 cut(s) 599, 1061, 1326
Hsp92II CATG 8 cut(s) 61, 174, 581, 790, 808, 844, 1250, 1470
KpnI GGTACC 1 cut(s) 1055
KspAI GTTAAC 1 cut(s) 1032
Kzo9I GATC 7 cut(s) 243, 679, 697, 793, 849, 1262, 1276
LguI GCTCTTC 1 cut(s) 182
LmnI GCTCC 2 cut(s) 308, 758
Lsp1109I GCAGC 2 cut(s) 487, 1106
MaeI CTAG 2 cut(s) 486, 636
MaeII ACGT 3 cut(s) 599, 1061, 1326
MaeIII GTNAC 2 cut(s) 362, 491
MalI GATC 7 cut(s) 245, 681, 699, 795, 851, 1264, 1278
MboI GATC 7 cut(s) 243, 679, 697, 793, 849, 1262, 1276
MboII GAAGA 7 cut(s) 169, 172, 196, 452, 712, 741, 1234
MfeI CAATTG 1 cut(s) 1152
MflI RGATCY 2 cut(s) 793, 1276
MhlI GDGCHC 3 cut(s) 313, 348, 484
MlyI GAGTC 4 cut(s) 359, 398, 829, 1244
MmeI TCCRAC 6 cut(s) 310, 690, 821, 1218, 1309, 1375
MroXI GAANNNNTTC 1 cut(s) 748
MseI TTAA 5 cut(s) 9, 867, 954, 1031, 1167
MspA1I CMGCKG 1 cut(s) 1097
MspI CCGG 6 cut(s) 306, 333, 417, 899, 1049, 1090
MspR9I CCNGG 3 cut(s) 333, 418, 1091
MunI CAATTG 1 cut(s) 1152
Mva1269I GAATGC 1 cut(s) 1462
MwoI GCNNNNNNNGC 3 cut(s) 317, 1148, 1411
NciI CCSGG 3 cut(s) 333, 418, 1091
NcoI CCATGG 2 cut(s) 57, 170
NdeII GATC 7 cut(s) 243, 679, 697, 793, 849, 1262, 1276
NlaIII CATG 8 cut(s) 61, 174, 581, 790, 808, 844, 1250, 1470
NlaIV GGNNCC 2 cut(s) 310, 1053
NmuCI GTSAC 1 cut(s) 362
PciSI GCTCTTC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 1 cut(s) 1074
PctI GAATGC 1 cut(s) 1462
PdmI GAANNNNTTC 1 cut(s) 748
PfeI GAWTC 1 cut(s) 997
PflFI GACNNNGTC 1 cut(s) 368
PflMI CCANNNNNTGG 2 cut(s) 548, 1252
PfoI TCCNGGA 1 cut(s) 416
PinAI ACCGGT 1 cut(s) 898
PkrI GCNGC 4 cut(s) 502, 1096, 1099, 1144
PleI GAGTC 4 cut(s) 359, 397, 829, 1243
PpsI GAGTC 4 cut(s) 359, 397, 829, 1243
Psp124BI GAGCTC 1 cut(s) 348
Psp1406I AACGTT 1 cut(s) 599
PspN4I GGNNCC 2 cut(s) 310, 1053
PspPI GGNCC 3 cut(s) 319, 624, 1240
PsuI RGATCY 2 cut(s) 793, 1276
PsyI GACNNNGTC 1 cut(s) 368
RsaI GTAC 4 cut(s) 459, 903, 1053, 1342
RsaNI GTAC 4 cut(s) 458, 902, 1052, 1341
SacI GAGCTC 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 182
SaqAI TTAA 5 cut(s) 9, 867, 954, 1031, 1167
SatI GCNGC 4 cut(s) 501, 1095, 1098, 1143
Sau3AI GATC 7 cut(s) 243, 679, 697, 793, 849, 1262, 1276
Sau96I GGNCC 3 cut(s) 319, 624, 1240
SchI GAGTC 4 cut(s) 359, 398, 829, 1244
ScrFI CCNGG 3 cut(s) 333, 418, 1091
SduI GDGCHC 3 cut(s) 313, 348, 484
SinI GGWCC 1 cut(s) 1240
SmlI CTYRAG 2 cut(s) 260, 753
SmoI CTYRAG 2 cut(s) 260, 753
SsiI CCGC 7 cut(s) 110, 322, 1022, 1026, 1097, 1142, 1199
SspI AATATT 1 cut(s) 7
SspMI CTAG 2 cut(s) 486, 636
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 3 cut(s) 331, 416, 1089
StyI CCWWGG 3 cut(s) 57, 170, 358
TaaI ACNGT 4 cut(s) 382, 497, 516, 1165
TaiI ACGT 3 cut(s) 602, 1064, 1329
TaqI TCGA 3 cut(s) 242, 387, 1233
TaqII GACCGA 1 cut(s) 358
TauI GCSGC 2 cut(s) 1100, 1145
TfiI GAWTC 1 cut(s) 997
Tru1I TTAA 5 cut(s) 9, 867, 954, 1031, 1167
Tru9I TTAA 5 cut(s) 9, 867, 954, 1031, 1167
TscAI CASTG 2 cut(s) 519, 1362
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 2 cut(s) 500, 1094
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 6 cut(s) 17, 225, 601, 633, 1299, 1432
TspGWI ACGGA 2 cut(s) 690, 1304
TspRI CASTG 2 cut(s) 519, 1362
Tth111I GACNNNGTC 1 cut(s) 368
Van91I CCANNNNNTGG 2 cut(s) 548, 1252
VneI GTGCAC 1 cut(s) 480
VpaK11BI GGWCC 1 cut(s) 1240
XapI RAATTY 3 cut(s) 212, 507, 744
XbaI TCTAGA 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 1417
XmiI GTMKAC 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 748
XspI CTAG 2 cut(s) 486, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.