Rh1DG272900

Anthocyanin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005947
Physical Location & Seq
Reverse (-)
49294139 .. 49295554
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG272900.1

Sequence Viewer

Length: 780 bp
ATGGAGGGTTCTTGCAACCCGGCTAGGGTTGTTGGGCAATGCAAGGTTTCTCCACCACCAGGCTCAGTTCCTACCACCTCTCTCCCTCTCACTTTCTTCGACATTGTTTTCCTCTTCTGCGGTCCGGTTGAATTTGTATACTTTTATGAGTTCCCTCACCCTCTTCACCACATCACCCAAACCATCCTCCCTAAGCTCAGACACTCTCTTTCCCTAACTCTCCAGCACTTCTTTCCCTTGGCCTCAAATCTCATCTGCCCTCCACCACCCTCCAAACCCTTTCTACATTACTCCGAGACTGACCGAACCTCACTCCTATTGACCATTGCCGAGTCCTCAAGCAACTTCAACCGCCTCACATCCTACCGTGTAAACAATGTTGCACAATCCCACTTCCTTGTTCCACCATTGCCACCAGCACGTGTGTTGGAGGATGGCACGCGTGTGGTCACTCCTGTAGCATTGCAACTCACTGTGTTCCCCAACTCCGGGATCTGCATTGGCATTAATTTTCTTCATGCATTGACTGATGGGAGTTCTTTGCATCATTTCATGAAGTCATGGGCATCTGTTTGTTTATCACAAGGAGTCAAGGCTTTGACTAGTACTCCCCCATCCCATAATAGAGGTTTGATTAAAGACCCATGCGGCCTTGAGAACAATAATAGTAGAGAAGAGGAAGGTGGGTTTGAGATTGTCTTGGCATTTGAAAAGGAAAAAATGAAGTCCTTCAATTCCATCTTTGAACAAGCTTTGAAGCTCCCGGAATCGCATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747 GO:0033809
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

259

Amino Acids

28.66

Weight (kDa)

6.86

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 23 - 213 1.1e-18 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 778
AccI GTMKAC 1 cut(s) 138
AccII CGCG 1 cut(s) 442
AciI CCGC 3 cut(s) 120, 352, 648
AclWI GGATC 1 cut(s) 500
AcsI RAATTY 1 cut(s) 131
AcvI CACGTG 1 cut(s) 422
AfaI GTAC 1 cut(s) 607
AfiI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
AflIII ACRYGT 2 cut(s) 421, 440
AgsI TTSAA 6 cut(s) 131, 349, 710, 733, 746, 757
AhlI ACTAGT 1 cut(s) 602
AjnI CCWGG 1 cut(s) 58
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 3 cut(s) 196, 752, 760
AluI AGCT 3 cut(s) 196, 752, 760
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 500
AoxI GGCC 2 cut(s) 240, 649
ApoI RAATTY 1 cut(s) 131
AseI ATTAAT 1 cut(s) 507
Asp700I GAANNNNTTC 1 cut(s) 728
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 3 cut(s) 20, 490, 764
AsuHPI GGTGA 3 cut(s) 149, 158, 166
AvaII GGWCC 1 cut(s) 122
BbrPI CACGTG 1 cut(s) 422
BccI CCATC 5 cut(s) 191, 428, 524, 622, 746
BciT130I CCWGG 1 cut(s) 60
BcnI CCSGG 3 cut(s) 20, 490, 764
BcoDI GTCTC 1 cut(s) 290
BcuI ACTAGT 1 cut(s) 602
BfaI CTAG 2 cut(s) 24, 603
BfmI CTRYAG 1 cut(s) 456
BisI GCNGC 1 cut(s) 649
BlsI GCNGC 1 cut(s) 650
BmcAI AGTACT 1 cut(s) 607
Bme1390I CCNGG 4 cut(s) 20, 60, 490, 764
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 4 cut(s) 20, 60, 490, 764
BmsI GCATC 2 cut(s) 553, 575
BpmI CTGGAG 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 192
BpuEI CTTGAG 2 cut(s) 322, 674
BpuMI CCSGG 3 cut(s) 20, 490, 764
BsaAI YACGTR 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
Bse3DI GCAATG 4 cut(s) 44, 324, 407, 461
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 4 cut(s) 183, 359, 439, 614
BseLI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
BseMI GCAATG 4 cut(s) 44, 324, 407, 461
BseMII CTCAG 2 cut(s) 78, 211
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 2 cut(s) 242, 651
BsiSI CCGG 4 cut(s) 20, 125, 489, 764
BslI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 2 cut(s) 242, 651
Bsp143I GATC 1 cut(s) 492
BspACI CCGC 3 cut(s) 120, 352, 648
BspANI GGCC 2 cut(s) 242, 651
BspCNI CTCAG 2 cut(s) 77, 210
BspFNI CGCG 1 cut(s) 442
BspHI TCATGA 1 cut(s) 552
BspPI GGATC 1 cut(s) 500
BsrDI GCAATG 4 cut(s) 44, 324, 407, 461
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 1 cut(s) 492
BssNAI GTATAC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 237
Bst1107I GTATAC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 368, 475
Bst6I CTCTTC 3 cut(s) 119, 168, 669
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 440
BstDEI CTNAG 3 cut(s) 64, 192, 197
BstF5I GGATG 4 cut(s) 183, 359, 439, 614
BstFNI CGCG 1 cut(s) 442
BstKTI GATC 1 cut(s) 495
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 1 cut(s) 492
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 4 cut(s) 18, 58, 488, 762
BstSFI CTRYAG 1 cut(s) 456
BstUI CGCG 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BstZ17I GTATAC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 242, 651
BtsCI GGATG 4 cut(s) 183, 359, 439, 614
BtsIMutI CAGTG 1 cut(s) 471
Cac8I GCNNGC 1 cut(s) 440
CciI TCATGA 1 cut(s) 552
Cfr13I GGNCC 1 cut(s) 122
CpoI CGGWCCG 1 cut(s) 122
Csp6I GTAC 1 cut(s) 606
CspI CGGWCCG 1 cut(s) 122
CviAII CATG 4 cut(s) 518, 553, 561, 645
CviJI RGCY 8 cut(s) 23, 63, 196, 242, 596, 651, 752, 760
CviKI_1 RGCY 8 cut(s) 23, 63, 196, 242, 596, 651, 752, 760
CviQI GTAC 1 cut(s) 606
DdeI CTNAG 3 cut(s) 64, 192, 197
DpnI GATC 1 cut(s) 494
DpnII GATC 1 cut(s) 492
Eam1104I CTCTTC 3 cut(s) 119, 168, 669
EarI CTCTTC 3 cut(s) 119, 168, 669
Eco130I CCWWGG 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 122
Eco72I CACGTG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 4 cut(s) 521, 556, 564, 648
FaiI YATR 8 cut(s) 139, 147, 519, 554, 562, 621, 646, 778
FatI CATG 4 cut(s) 517, 552, 560, 644
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 649
FokI GGATG 4 cut(s) 170, 346, 446, 601
Fsp4HI GCNGC 1 cut(s) 649
FspBI CTAG 2 cut(s) 24, 603
GluI GCNGC 1 cut(s) 649
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 2 cut(s) 242, 651
HapII CCGG 4 cut(s) 20, 125, 489, 764
Hin1II CATG 4 cut(s) 521, 556, 564, 648
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 3 cut(s) 332, 588, 767
HpaII CCGG 4 cut(s) 20, 125, 489, 764
HphI GGTGA 3 cut(s) 149, 158, 166
Hpy166II GTNNAC 2 cut(s) 139, 373
Hpy188I TCNGA 2 cut(s) 200, 295
Hpy188III TCNNGA 1 cut(s) 553
Hpy8I GTNNAC 2 cut(s) 139, 373
HpyAV CCTTC 2 cut(s) 674, 739
HpyCH4III ACNGT 2 cut(s) 368, 475
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 7 cut(s) 15, 42, 383, 466, 498, 521, 544
HpyF3I CTNAG 3 cut(s) 64, 192, 197
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 4 cut(s) 521, 556, 564, 648
Kzo9I GATC 1 cut(s) 492
LmnI GCTCC 1 cut(s) 765
LpnPI CCDG 8 cut(s) 33, 45, 72, 138, 236, 429, 468, 502
LweI GCATC 2 cut(s) 553, 575
MaeI CTAG 2 cut(s) 24, 603
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 1 cut(s) 448
MalI GATC 1 cut(s) 494
MboI GATC 1 cut(s) 492
MboII GAAGA 5 cut(s) 88, 106, 155, 506, 686
MflI RGATCY 1 cut(s) 492
MluCI AATT 3 cut(s) 131, 508, 733
MluI ACGCGT 1 cut(s) 440
MlyI GAGTC 2 cut(s) 341, 597
MmeI TCCRAC 1 cut(s) 408
Mph1103I ATGCAT 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 728
MseI TTAA 2 cut(s) 507, 636
MslI CAYNNNNRTG 1 cut(s) 443
MspI CCGG 4 cut(s) 20, 125, 489, 764
MspR9I CCNGG 4 cut(s) 20, 60, 490, 764
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 442
NciI CCSGG 3 cut(s) 20, 490, 764
NdeII GATC 1 cut(s) 492
NlaIII CATG 4 cut(s) 521, 556, 564, 648
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 1 cut(s) 523
OliI CACNNNNGTG 1 cut(s) 443
PagI TCATGA 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 728
PfeI GAWTC 1 cut(s) 767
PfoI TCCNGGA 2 cut(s) 488, 762
PkrI GCNGC 1 cut(s) 650
PleI GAGTC 2 cut(s) 340, 596
PmaCI CACGTG 1 cut(s) 422
PmlI CACGTG 1 cut(s) 422
PpsI GAGTC 2 cut(s) 340, 596
Ppu21I YACGTR 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 507
PsiI TTATAA 1 cut(s) 778
Psp6I CCWGG 1 cut(s) 58
PspCI CACGTG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 58
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 1 cut(s) 607
RsaNI GTAC 1 cut(s) 606
RseI CAYNNNNRTG 1 cut(s) 443
Rsr2I CGGWCCG 1 cut(s) 122
RsrII CGGWCCG 1 cut(s) 122
SaqAI TTAA 2 cut(s) 507, 636
SatI GCNGC 1 cut(s) 649
Sau3AI GATC 1 cut(s) 492
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 1 cut(s) 607
SchI GAGTC 2 cut(s) 341, 597
ScrFI CCNGG 4 cut(s) 20, 60, 490, 764
SetI ASST 9 cut(s) 48, 80, 198, 311, 424, 631, 685, 754, 762
SfaNI GCATC 2 cut(s) 553, 575
SfcI CTRYAG 1 cut(s) 456
SinI GGWCC 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 2 cut(s) 337, 653
SmoI CTYRAG 2 cut(s) 337, 653
SpeI ACTAGT 1 cut(s) 602
Sse9I AATT 3 cut(s) 131, 508, 733
SsiI CCGC 3 cut(s) 120, 352, 648
SspMI CTAG 2 cut(s) 24, 603
StyD4I CCNGG 4 cut(s) 18, 58, 488, 762
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 368, 475
TaiI ACGT 1 cut(s) 424
TaqI TCGA 1 cut(s) 99
TaqII GACCGA 1 cut(s) 318
TasI AATT 3 cut(s) 131, 508, 733
TatI WGTACW 1 cut(s) 605
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 1 cut(s) 767
Tru1I TTAA 2 cut(s) 507, 636
Tru9I TTAA 2 cut(s) 507, 636
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 4 cut(s) 506, 541, 569, 737
TspRI CASTG 1 cut(s) 478
VpaK11BI GGWCC 1 cut(s) 122
VspI ATTAAT 1 cut(s) 507
XapI RAATTY 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 728
XspI CTAG 2 cut(s) 24, 603
ZrmI AGTACT 1 cut(s) 607
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.