Rh1DG009200

Anthocyanin 5-aromatic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005947
Physical Location & Seq
Forward (+)
1546469 .. 1548007
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG009200.1

Sequence Viewer

Length: 1260 bp
ATGGCTCAACTCTCCAAACTCAATGTTATTGAGCAATGCCAAGTCTCTACCCCGCAAAACTCATCTACTCCACAAGCTTGTTATCATCTCCCTCTAACCTTCCTTGACATACCATGGCTCTTCTTCTCTCCAAGCCAACCTCTTTTCTTCTATGAATTCCCATATCCCACTTCTCATTTCACATCGATCACTCTACCAAATCTCAAGCACTCTCTCTCCCTTACTCTCCAACTCTTTTACCCTTTTGCCGGAGCCCTACTGGCCCGCCCCGAACCCGGAAAACCCGAGCTCGTCTACTCCCAAGGTGACTCGGTCTCATTCACCGTCGTCGAGTCAAATGCAGACTTCGGCTATCTTTCCGGGAATTACCAAAGATATGTTGAAGAGTTCAACACACTTGTACCTCAACTGGCTTCAACTGGTGCACCTAGTAGTAACTGTGCTGCCAAAATTTCACTGTTGAGCGTTCAAATTACATTGTTCCCAAATTGTGGCATTTGCATTGGACTTGCATATCATCATGTTGTTGCTGACAAGAGAACGTTCAACAATTTCATCAAGACTTGGGCCTCATTATCTAGACATTCATTTTTCCCCACCAAGTCTATCTTGCCCTCTTATGATCGTAAGGCCATTGTTGATCAGTATAAGTTGGAGGGTATCTTCTTGAAGGAATGGTGGAAGCGAATTTCTTCTCAAGGAGCAATTATAGGTAATACTAAAACTGCCATGTTAGATCAAACGAGCATGGTTCGGGCAACTTTTTTGATGGACTTGACTCGCATGGAGAGGATCAAAAATTGGATTGTTAATCTATGCAACAAGGGAAATGAGCCACTACCGGTACATTTATCTGCTTATGTCCTAACATGGTTTGGCCGGGCAGCGGCGATAAGGAGTGAGTTGTTGGGGGACAATGGAATTGTTGTTGCGGCAAGAGCAATTGGAAATACGGTTAAGAAGTTAGACAAGGTTATTTTTGGAGGGGCAGAGAAATGGATTTCGGATTGGAAGATTATGTTCGAGTCGGAGCTCCATGTTATGGTATCAGGATCACCGAAAGTGGATCTTTATGAATCGGATTTTGGGTTGGAGAGACCCAAAAAGATAGAGGACGTTGGAGTTGATGGTACTAAAGCTATTGCACTGACTGAGAGTAGAGATGTATCAGGTGGCATTGAGGTTGGATTAGTGCTACCCAAGCCTCAAATGGATTATTTCTCAACTTTTTTCATTGAGGGACTGAATGCTACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

419

Amino Acids

46.73

Weight (kDa)

7.08

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 22 - 213 4.4e-22 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 491, 1042
AccI GTMKAC 1 cut(s) 294
AciI CCGC 4 cut(s) 53, 265, 887, 932
AclI AACGTT 1 cut(s) 542
AclWI GGATC 3 cut(s) 800, 1060, 1074
AcoI YGGCCR 1 cut(s) 877
AcsI RAATTY 3 cut(s) 155, 450, 687
AfaI GTAC 3 cut(s) 402, 846, 1132
AfiI CCNNNNNNNGG 5 cut(s) 248, 275, 491, 886, 1042
AgeI ACCGGT 1 cut(s) 841
AgsI TTSAA 6 cut(s) 383, 391, 417, 470, 547, 670
AjuI GAANNNNNNNTTGG 2 cut(s) 1068, 1100
AluBI AGCT 4 cut(s) 77, 289, 1033, 1139
AluI AGCT 4 cut(s) 77, 289, 1033, 1139
Alw21I GWGCWC 3 cut(s) 291, 427, 1035
Alw26I GTCTC 3 cut(s) 49, 319, 1090
Alw44I GTGCAC 1 cut(s) 423
AlwI GGATC 3 cut(s) 800, 1060, 1074
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 4 cut(s) 261, 567, 630, 877
ApaLI GTGCAC 1 cut(s) 423
ApeKI GCWGC 2 cut(s) 443, 884
ApoI RAATTY 3 cut(s) 155, 450, 687
AsiGI ACCGGT 1 cut(s) 841
Asp700I GAANNNNTTC 1 cut(s) 691
AspS9I GGNCC 2 cut(s) 262, 567
AsuC2I CCSGG 3 cut(s) 276, 361, 881
AsuHPI GGTGA 3 cut(s) 313, 317, 1047
AvaI CYCGRG 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 427
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BanII GRGCYC 3 cut(s) 256, 291, 1035
Bbv12I GWGCWC 3 cut(s) 291, 427, 1035
BbvI GCAGC 2 cut(s) 430, 896
BccI CCATC 2 cut(s) 763, 1121
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BclI TGATCA 1 cut(s) 640
BcnI CCSGG 3 cut(s) 276, 361, 881
BcoDI GTCTC 3 cut(s) 49, 319, 1090
BfaI CTAG 2 cut(s) 429, 579
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 4 cut(s) 444, 885, 888, 933
BlsI GCNGC 4 cut(s) 445, 886, 889, 934
Bme1390I CCNGG 3 cut(s) 276, 361, 881
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 262, 567
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 3 cut(s) 276, 361, 881
BpuEI CTTGAG 2 cut(s) 188, 681
BpuMI CCSGG 3 cut(s) 276, 361, 881
Bsa29I ATCGAT 1 cut(s) 185
BsaI GGTCTC 2 cut(s) 319, 1090
BsaJI CCNNGG 2 cut(s) 113, 301
BsaWI WCCGGW 1 cut(s) 841
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 5 cut(s) 248, 275, 491, 886, 1042
Bse118I RCCGGY 1 cut(s) 841
Bse1I ACTGG 3 cut(s) 264, 414, 424
Bse3DI GCAATG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 113, 301
BseLI CCNNNNNNNGG 5 cut(s) 248, 275, 491, 886, 1042
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 1143
BseNI ACTGG 3 cut(s) 264, 414, 424
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 2 cut(s) 430, 896
BshFI GGCC 4 cut(s) 263, 569, 632, 879
BshTI ACCGGT 1 cut(s) 841
BshVI ATCGAT 1 cut(s) 185
BsiHKAI GWGCWC 3 cut(s) 291, 427, 1035
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 5 cut(s) 249, 276, 360, 842, 880
BslFI GGGAC 2 cut(s) 926, 1254
BslI CCNNNNNNNGG 5 cut(s) 248, 275, 491, 886, 1042
BsmAI GTCTC 3 cut(s) 49, 319, 1090
BsmFI GGGAC 2 cut(s) 926, 1254
BsmI GAATGC 1 cut(s) 1252
BsnI GGCC 4 cut(s) 263, 569, 632, 879
Bso31I GGTCTC 2 cut(s) 319, 1090
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 4 cut(s) 256, 291, 427, 1035
Bsp143I GATC 7 cut(s) 186, 622, 640, 736, 792, 1052, 1066
Bsp19I CCATGG 1 cut(s) 113
BspACI CCGC 4 cut(s) 53, 265, 887, 932
BspANI GGCC 4 cut(s) 263, 569, 632, 879
BspCNI CTCAG 1 cut(s) 1144
BspDI ATCGAT 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 3 cut(s) 800, 1060, 1074
BspQI GCTCTTC 1 cut(s) 125
BspTNI GGTCTC 2 cut(s) 319, 1090
BsrDI GCAATG 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 841
BsrI ACTGG 3 cut(s) 264, 414, 424
BssAI RCCGGY 1 cut(s) 841
BssECI CCNNGG 2 cut(s) 113, 301
BssMI GATC 7 cut(s) 186, 622, 640, 736, 792, 1052, 1066
BssT1I CCWWGG 2 cut(s) 113, 301
Bst4CI ACNGT 4 cut(s) 325, 440, 459, 955
Bst6I CTCTTC 2 cut(s) 125, 378
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 1152
BstDSI CCRYGG 1 cut(s) 113
BstKTI GATC 7 cut(s) 189, 625, 643, 739, 795, 1055, 1069
BstMAI GTCTC 3 cut(s) 49, 319, 1090
BstMBI GATC 7 cut(s) 186, 622, 640, 736, 792, 1052, 1066
BstMWI GCNNNNNNNGC 3 cut(s) 260, 938, 1201
BstSCI CCNGG 3 cut(s) 274, 359, 879
BstSLI GKGCMC 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 430, 896
BstX2I RGATCY 1 cut(s) 1066
BstYI RGATCY 1 cut(s) 1066
Bsu15I ATCGAT 1 cut(s) 185
BsuRI GGCC 4 cut(s) 263, 569, 632, 879
BsuTUI ATCGAT 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 113
BtsIMutI CAGTG 2 cut(s) 455, 1145
Cac8I GCNNGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 841
Cfr13I GGNCC 2 cut(s) 262, 567
ClaI ATCGAT 1 cut(s) 185
Csp6I GTAC 3 cut(s) 401, 845, 1131
CspAI ACCGGT 1 cut(s) 841
CviAII CATG 8 cut(s) 114, 521, 730, 748, 784, 870, 1037, 1257
CviQI GTAC 3 cut(s) 401, 845, 1131
DdeI CTNAG 1 cut(s) 1152
DpnI GATC 7 cut(s) 188, 624, 642, 738, 794, 1054, 1068
DpnII GATC 7 cut(s) 186, 622, 640, 736, 792, 1052, 1066
EaeI YGGCCR 1 cut(s) 877
Eam1104I CTCTTC 2 cut(s) 125, 378
EarI CTCTTC 2 cut(s) 125, 378
Ecl136II GAGCTC 2 cut(s) 289, 1033
Eco130I CCWWGG 2 cut(s) 113, 301
Eco24I GRGCYC 3 cut(s) 256, 291, 1035
Eco31I GGTCTC 2 cut(s) 319, 1090
Eco53kI GAGCTC 2 cut(s) 289, 1033
Eco88I CYCGRG 1 cut(s) 284
EcoICRI GAGCTC 2 cut(s) 289, 1033
EcoRI GAATTC 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 113, 301
EcoT38I GRGCYC 3 cut(s) 256, 291, 1035
ErhI CCWWGG 2 cut(s) 113, 301
FaeI CATG 8 cut(s) 117, 524, 733, 751, 787, 873, 1040, 1260
FalI AAGNNNNNCTT 4 cut(s) 593, 625, 1053, 1085
FaqI GGGAC 2 cut(s) 926, 1254
FatI CATG 8 cut(s) 113, 520, 729, 747, 783, 869, 1036, 1256
FauI CCCGC 2 cut(s) 60, 272
FbaI TGATCA 1 cut(s) 640
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 4 cut(s) 444, 885, 888, 933
FriOI GRGCYC 3 cut(s) 256, 291, 1035
Fsp4HI GCNGC 4 cut(s) 444, 885, 888, 933
FspBI CTAG 2 cut(s) 429, 579
GluI GCNGC 4 cut(s) 444, 885, 888, 933
HaeIII GGCC 4 cut(s) 263, 569, 632, 879
HapII CCGG 5 cut(s) 249, 276, 360, 842, 880
Hin1II CATG 8 cut(s) 117, 524, 733, 751, 787, 873, 1040, 1260
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 5 cut(s) 308, 332, 778, 1025, 1076
HpaII CCGG 5 cut(s) 249, 276, 360, 842, 880
HphI GGTGA 3 cut(s) 313, 317, 1047
Hpy166II GTNNAC 2 cut(s) 295, 425
Hpy188I TCNGA 3 cut(s) 1006, 1030, 1081
Hpy188III TCNNGA 4 cut(s) 559, 579, 667, 1050
Hpy8I GTNNAC 2 cut(s) 295, 425
Hpy99I CGWCG 2 cut(s) 329, 332
HpyAV CCTTC 2 cut(s) 109, 664
HpyCH4III ACNGT 4 cut(s) 325, 440, 459, 955
HpyCH4IV ACGT 2 cut(s) 542, 1116
HpyCH4V TGCA 6 cut(s) 341, 425, 501, 512, 819, 1145
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 938, 1201
HpyF3I CTNAG 1 cut(s) 1152
HpySE526I ACGT 2 cut(s) 542, 1116
Hsp92II CATG 8 cut(s) 117, 524, 733, 751, 787, 873, 1040, 1260
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 7 cut(s) 186, 622, 640, 736, 792, 1052, 1066
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 4 cut(s) 251, 701, 1030, 1038
Lsp1109I GCAGC 2 cut(s) 430, 896
MaeI CTAG 2 cut(s) 429, 579
MaeII ACGT 2 cut(s) 542, 1116
MaeIII GTNAC 2 cut(s) 305, 434
MalI GATC 7 cut(s) 188, 624, 642, 738, 794, 1054, 1068
MboI GATC 7 cut(s) 186, 622, 640, 736, 792, 1052, 1066
MboII GAAGA 7 cut(s) 112, 115, 139, 395, 655, 684, 1024
MfeI CAATTG 1 cut(s) 942
MflI RGATCY 1 cut(s) 1066
MhlI GDGCHC 4 cut(s) 256, 291, 427, 1035
MlyI GAGTC 4 cut(s) 302, 341, 772, 1034
MmeI TCCRAC 6 cut(s) 253, 633, 1008, 1071, 1099, 1165
MroXI GAANNNNTTC 1 cut(s) 691
MseI TTAA 2 cut(s) 810, 957
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 5 cut(s) 249, 276, 360, 842, 880
MspR9I CCNGG 3 cut(s) 276, 361, 881
MunI CAATTG 1 cut(s) 942
Mva1269I GAATGC 1 cut(s) 1252
MwoI GCNNNNNNNGC 3 cut(s) 260, 938, 1201
NciI CCSGG 3 cut(s) 276, 361, 881
NcoI CCATGG 1 cut(s) 113
NdeII GATC 7 cut(s) 186, 622, 640, 736, 792, 1052, 1066
NlaIII CATG 8 cut(s) 117, 524, 733, 751, 787, 873, 1040, 1260
NlaIV GGNNCC 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 125
PctI GAATGC 1 cut(s) 1252
PdmI GAANNNNTTC 1 cut(s) 691
PfeI GAWTC 1 cut(s) 1076
PflFI GACNNNGTC 1 cut(s) 311
PflMI CCANNNNNTGG 2 cut(s) 491, 1042
PfoI TCCNGGA 1 cut(s) 359
PinAI ACCGGT 1 cut(s) 841
PkrI GCNGC 4 cut(s) 445, 886, 889, 934
PleI GAGTC 4 cut(s) 302, 340, 772, 1033
PpsI GAGTC 4 cut(s) 302, 340, 772, 1033
Psp124BI GAGCTC 2 cut(s) 291, 1035
Psp1406I AACGTT 1 cut(s) 542
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 2 cut(s) 262, 567
PsuI RGATCY 1 cut(s) 1066
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 3 cut(s) 402, 846, 1132
RsaNI GTAC 3 cut(s) 401, 845, 1131
SacI GAGCTC 2 cut(s) 291, 1035
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 810, 957
SatI GCNGC 4 cut(s) 444, 885, 888, 933
Sau3AI GATC 7 cut(s) 186, 622, 640, 736, 792, 1052, 1066
Sau96I GGNCC 2 cut(s) 262, 567
SchI GAGTC 4 cut(s) 302, 341, 772, 1034
ScrFI CCNGG 3 cut(s) 276, 361, 881
SduI GDGCHC 4 cut(s) 256, 291, 427, 1035
SmlI CTYRAG 2 cut(s) 203, 696
SmoI CTYRAG 2 cut(s) 203, 696
SsiI CCGC 4 cut(s) 53, 265, 887, 932
SspMI CTAG 2 cut(s) 429, 579
SstI GAGCTC 2 cut(s) 291, 1035
StyD4I CCNGG 3 cut(s) 274, 359, 879
StyI CCWWGG 2 cut(s) 113, 301
TaaI ACNGT 4 cut(s) 325, 440, 459, 955
TaiI ACGT 2 cut(s) 545, 1119
TaqI TCGA 3 cut(s) 185, 330, 1023
TaqII GACCGA 1 cut(s) 301
TauI GCSGC 2 cut(s) 890, 935
TfiI GAWTC 1 cut(s) 1076
Tru1I TTAA 2 cut(s) 810, 957
Tru9I TTAA 2 cut(s) 810, 957
TscAI CASTG 2 cut(s) 462, 1152
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 2 cut(s) 443, 884
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 5 cut(s) 168, 544, 576, 1089, 1222
TspRI CASTG 2 cut(s) 462, 1152
Tth111I GACNNNGTC 1 cut(s) 311
Van91I CCANNNNNTGG 2 cut(s) 491, 1042
VneI GTGCAC 1 cut(s) 423
XapI RAATTY 3 cut(s) 155, 450, 687
XbaI TCTAGA 1 cut(s) 578
XcmI CCANNNNNNNNNTGG 1 cut(s) 1207
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 691
XspI CTAG 2 cut(s) 429, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.