Rw1G000950

Anthocyanin 5-aromatic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005947
Physical Location & Seq
Forward (+)
1408084 .. 1409706
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G000950.1

Sequence Viewer

Length: 1413 bp
ATGGCTCAACTCTCCGAACTCAATGTTATTGAGCAATGCCAAGTCTCTACCCCGCAAAACTCATCTACTCCACAAGCTTGTTATCATCTCCCTCTAACCTTCCTTGACATACCATGGCTCTTCTTCTCTCCAAGCCAACCTCTTTTCTTCTATGAATTCCCATATCCCACTTCTCATTTCACATCGATCACTCTACCAAATCTCAAGCACTCTCTCTCCCTTACTCTCCAACTCTTTTACCCTTTTGCCGGAGCCCTACTGGCCCGCCCCGAACCCGGAAAACCCGAGCTCGTCTACTCCCAAGGTGACTCGGTCTCATTCACCGTCGTCGAGTCAAATGCAGACTTCGGCTATCTTTCCGGGAATTACCAAAGATATGTTGAAGAGTTCAACACACTTGTACCTCAACTGGCTTCAACTGGTGCACCTAGTAGTAACTGTGCTGCTAAAATTCCACTGTTGAGCGTTCAAATTACATTGTTCCCAAATTGTGGCATTTGCATTGGACTTGCATATCATCATGTTGTTGCTGACAAGAGAACGTTCAACAATTTCATCAAGACTTGGGCCTCATTATCTAGACATTCATTTTTCCCCACCAAGTCTGTCTTGCCCTCTTATGATCGTAAGGCCATTGTTGATCCATATAAGTTGGAGGGTATCTTCTTGAAGGAATGGTGGAAGCGAATTTCTTCTCAAGGAGCAATTATAGGTAATACTAAAACTGCCATGTTAGATCCAACGAGCATGGTTCGGGCAACTTTTTTTATGGACTTGACTCGCATGGAGAGGATCAAAAATTGGATTGTTAATCTATGCAACAAGGGAAATGAGCCACTACCGGTACATTTATCTGCTTATGTCCTAACATGTGCGTTTGTATGGATTTCTTTGATTAAAAGCCAAGAAAAATACTTCAATTACAAGTGTTGTGGTCAGGATCCGAATTATTTTGGGTTTATTGCGGGCGGGTTAACCCGTTTGAACCATCCGGTACCCTCAACGTATGTCGGTAATTGCGTAGGGTTTGGCCGGGCAGCGGCAATAAGGAGTGAGTTGTTGGGGGACAATGGAATTGTTGTTGCGGCAAGAGCAATTGGAAATACGGTTAAGAAGTTAGACAAGGTTATTTTTGGAGGGGCAGAGAAATGGATCTCGGATTGGAAGATTATGTTCGAGTCGGAGCTCCATGTTATGGTATCAGGATCACCGAAAGTGGATCTTTATGAAACGGATTTTGGGTTGGGAAGACCCAAAAAGATAGAGGACGTTGGAGTTGATGGTACTAAAGCTATTGCACTGACTGAGAGTAGAGATGTATCAGGTGGCATTGAGGTTGGATTAGTGCTACCCAAGCCTCAAATGGATTATTTCTCGACTTTTTTCATCGAGGGACTGAATGCTACTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

470

Amino Acids

52.24

Weight (kDa)

7.54

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 23 - 459 1.7e-38 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 994
AccB1I GGYRCC 1 cut(s) 994
AccB7I CCANNNNNTGG 2 cut(s) 491, 1195
AccI GTMKAC 1 cut(s) 294
AciI CCGC 6 cut(s) 53, 265, 965, 969, 1040, 1085
AclI AACGTT 1 cut(s) 542
AclWI GGATC 8 cut(s) 635, 731, 800, 935, 948, 1160, 1213, 1227
AcoI YGGCCR 1 cut(s) 1030
AcsI RAATTY 3 cut(s) 155, 450, 687
AfaI GTAC 4 cut(s) 402, 846, 996, 1285
AfiI CCNNNNNNNGG 5 cut(s) 248, 275, 491, 1039, 1195
AflIII ACRYGT 1 cut(s) 869
AgeI ACCGGT 1 cut(s) 841
AgsI TTSAA 8 cut(s) 383, 391, 417, 470, 547, 670, 919, 985
AjuI GAANNNNNNNTTGG 2 cut(s) 1221, 1253
AluBI AGCT 4 cut(s) 77, 289, 1186, 1292
AluI AGCT 4 cut(s) 77, 289, 1186, 1292
Alw21I GWGCWC 3 cut(s) 291, 427, 1188
Alw26I GTCTC 2 cut(s) 49, 319
Alw44I GTGCAC 1 cut(s) 423
AlwI GGATC 8 cut(s) 635, 731, 800, 935, 948, 1160, 1213, 1227
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 4 cut(s) 261, 567, 630, 1030
ApaLI GTGCAC 1 cut(s) 423
ApeKI GCWGC 2 cut(s) 443, 1037
ApoI RAATTY 3 cut(s) 155, 450, 687
AsiGI ACCGGT 1 cut(s) 841
Asp700I GAANNNNTTC 1 cut(s) 691
Asp718I GGTACC 1 cut(s) 994
AspS9I GGNCC 2 cut(s) 262, 567
AsuC2I CCSGG 3 cut(s) 276, 361, 1034
AsuHPI GGTGA 3 cut(s) 313, 317, 1200
AvaI CYCGRG 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 427
BaeI ACNNNNGTAYC 2 cut(s) 384, 417
BamHI GGATCC 1 cut(s) 940
BanI GGYRCC 1 cut(s) 994
BanII GRGCYC 3 cut(s) 256, 291, 1188
BbsI GAAGAC 1 cut(s) 1255
Bbv12I GWGCWC 3 cut(s) 291, 427, 1188
BbvI GCAGC 2 cut(s) 430, 1049
BccI CCATC 2 cut(s) 996, 1274
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BcnI CCSGG 3 cut(s) 276, 361, 1034
BcoDI GTCTC 2 cut(s) 49, 319
BfaI CTAG 2 cut(s) 429, 579
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 4 cut(s) 444, 1038, 1041, 1086
BlsI GCNGC 4 cut(s) 445, 1039, 1042, 1087
Bme1390I CCNGG 3 cut(s) 276, 361, 1034
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 262, 567
BmiI GGNNCC 3 cut(s) 253, 942, 996
BmrFI CCNGG 3 cut(s) 276, 361, 1034
BpiI GAAGAC 1 cut(s) 1255
BpuEI CTTGAG 2 cut(s) 188, 681
BpuMI CCSGG 3 cut(s) 276, 361, 1034
Bsa29I ATCGAT 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 113, 301
BsaWI WCCGGW 2 cut(s) 841, 991
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 5 cut(s) 248, 275, 491, 1039, 1195
Bse118I RCCGGY 1 cut(s) 841
Bse1I ACTGG 3 cut(s) 264, 414, 424
Bse3DI GCAATG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 113, 301
BseGI GGATG 1 cut(s) 988
BseLI CCNNNNNNNGG 5 cut(s) 248, 275, 491, 1039, 1195
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 1296
BseNI ACTGG 3 cut(s) 264, 414, 424
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 2 cut(s) 430, 1049
BshFI GGCC 4 cut(s) 263, 569, 632, 1032
BshNI GGYRCC 1 cut(s) 994
BshTI ACCGGT 1 cut(s) 841
BshVI ATCGAT 1 cut(s) 185
BsiHKAI GWGCWC 3 cut(s) 291, 427, 1188
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 6 cut(s) 249, 276, 360, 842, 992, 1033
BslFI GGGAC 2 cut(s) 1079, 1407
BslI CCNNNNNNNGG 5 cut(s) 248, 275, 491, 1039, 1195
BsmAI GTCTC 2 cut(s) 49, 319
BsmFI GGGAC 2 cut(s) 1079, 1407
BsmI GAATGC 1 cut(s) 1405
BsnI GGCC 4 cut(s) 263, 569, 632, 1032
Bso31I GGTCTC 1 cut(s) 319
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 4 cut(s) 256, 291, 427, 1188
Bsp143I GATC 9 cut(s) 186, 622, 640, 736, 792, 940, 1152, 1205, 1219
Bsp19I CCATGG 1 cut(s) 113
BspACI CCGC 6 cut(s) 53, 265, 965, 969, 1040, 1085
BspANI GGCC 4 cut(s) 263, 569, 632, 1032
BspCNI CTCAG 1 cut(s) 1297
BspDI ATCGAT 1 cut(s) 185
BspLI GGNNCC 3 cut(s) 253, 942, 996
BspPI GGATC 8 cut(s) 635, 731, 800, 935, 948, 1160, 1213, 1227
BspQI GCTCTTC 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 994
BspTNI GGTCTC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 841
BsrI ACTGG 3 cut(s) 264, 414, 424
BssAI RCCGGY 1 cut(s) 841
BssECI CCNNGG 2 cut(s) 113, 301
BssMI GATC 9 cut(s) 186, 622, 640, 736, 792, 940, 1152, 1205, 1219
BssT1I CCWWGG 2 cut(s) 113, 301
Bst4CI ACNGT 4 cut(s) 325, 440, 459, 1108
Bst6I CTCTTC 2 cut(s) 125, 378
BstC8I GCNNGC 2 cut(s) 265, 967
BstDEI CTNAG 1 cut(s) 1305
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 988
BstKTI GATC 9 cut(s) 189, 625, 643, 739, 795, 943, 1155, 1208, 1222
BstMAI GTCTC 2 cut(s) 49, 319
BstMBI GATC 9 cut(s) 186, 622, 640, 736, 792, 940, 1152, 1205, 1219
BstMWI GCNNNNNNNGC 3 cut(s) 260, 1091, 1354
BstNSI RCATGY 1 cut(s) 873
BstSCI CCNGG 3 cut(s) 274, 359, 1032
BstSLI GKGCMC 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 430, 1049
BstV2I GAAGAC 1 cut(s) 1255
BstX2I RGATCY 4 cut(s) 736, 940, 1152, 1219
BstYI RGATCY 4 cut(s) 736, 940, 1152, 1219
Bsu15I ATCGAT 1 cut(s) 185
BsuRI GGCC 4 cut(s) 263, 569, 632, 1032
BsuTUI ATCGAT 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 988
BtsIMutI CAGTG 2 cut(s) 455, 1298
Cac8I GCNNGC 2 cut(s) 265, 967
Cfr10I RCCGGY 1 cut(s) 841
Cfr13I GGNCC 2 cut(s) 262, 567
ClaI ATCGAT 1 cut(s) 185
Csp6I GTAC 4 cut(s) 401, 845, 995, 1284
CspAI ACCGGT 1 cut(s) 841
CspCI CAANNNNNGTGG 2 cut(s) 913, 948
CviAII CATG 8 cut(s) 114, 521, 730, 748, 784, 870, 1190, 1410
CviQI GTAC 4 cut(s) 401, 845, 995, 1284
DdeI CTNAG 1 cut(s) 1305
DpnI GATC 9 cut(s) 188, 624, 642, 738, 794, 942, 1154, 1207, 1221
DpnII GATC 9 cut(s) 186, 622, 640, 736, 792, 940, 1152, 1205, 1219
EaeI YGGCCR 1 cut(s) 1030
Eam1104I CTCTTC 2 cut(s) 125, 378
EarI CTCTTC 2 cut(s) 125, 378
Ecl136II GAGCTC 2 cut(s) 289, 1186
Eco130I CCWWGG 2 cut(s) 113, 301
Eco24I GRGCYC 3 cut(s) 256, 291, 1188
Eco31I GGTCTC 1 cut(s) 319
Eco53kI GAGCTC 2 cut(s) 289, 1186
Eco88I CYCGRG 1 cut(s) 284
EcoICRI GAGCTC 2 cut(s) 289, 1186
EcoRI GAATTC 1 cut(s) 155
EcoT14I CCWWGG 2 cut(s) 113, 301
EcoT38I GRGCYC 3 cut(s) 256, 291, 1188
ErhI CCWWGG 2 cut(s) 113, 301
FaeI CATG 8 cut(s) 117, 524, 733, 751, 787, 873, 1193, 1413
FalI AAGNNNNNCTT 4 cut(s) 593, 625, 1206, 1238
FaqI GGGAC 2 cut(s) 1079, 1407
FatI CATG 8 cut(s) 113, 520, 729, 747, 783, 869, 1189, 1409
FauI CCCGC 4 cut(s) 60, 272, 958, 962
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 4 cut(s) 444, 1038, 1041, 1086
FokI GGATG 1 cut(s) 975
FriOI GRGCYC 3 cut(s) 256, 291, 1188
Fsp4HI GCNGC 4 cut(s) 444, 1038, 1041, 1086
FspBI CTAG 2 cut(s) 429, 579
GluI GCNGC 4 cut(s) 444, 1038, 1041, 1086
HaeIII GGCC 4 cut(s) 263, 569, 632, 1032
HapII CCGG 6 cut(s) 249, 276, 360, 842, 992, 1033
Hin1II CATG 8 cut(s) 117, 524, 733, 751, 787, 873, 1193, 1413
HincII GTYRAC 1 cut(s) 975
HindII GTYRAC 1 cut(s) 975
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 4 cut(s) 308, 332, 778, 1178
HpaI GTTAAC 1 cut(s) 975
HpaII CCGG 6 cut(s) 249, 276, 360, 842, 992, 1033
HphI GGTGA 3 cut(s) 313, 317, 1200
Hpy166II GTNNAC 3 cut(s) 295, 425, 975
Hpy188I TCNGA 4 cut(s) 16, 945, 1159, 1183
Hpy188III TCNNGA 6 cut(s) 559, 579, 667, 938, 1203, 1375
Hpy8I GTNNAC 3 cut(s) 295, 425, 975
Hpy99I CGWCG 2 cut(s) 329, 332
HpyAV CCTTC 2 cut(s) 109, 664
HpyCH4III ACNGT 4 cut(s) 325, 440, 459, 1108
HpyCH4IV ACGT 3 cut(s) 542, 1004, 1269
HpyCH4V TGCA 6 cut(s) 341, 425, 501, 512, 819, 1298
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 1091, 1354
HpyF3I CTNAG 1 cut(s) 1305
HpySE526I ACGT 3 cut(s) 542, 1004, 1269
Hsp92II CATG 8 cut(s) 117, 524, 733, 751, 787, 873, 1193, 1413
KpnI GGTACC 1 cut(s) 998
KspAI GTTAAC 1 cut(s) 975
Kzo9I GATC 9 cut(s) 186, 622, 640, 736, 792, 940, 1152, 1205, 1219
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 4 cut(s) 251, 701, 1183, 1191
Lsp1109I GCAGC 2 cut(s) 430, 1049
MaeI CTAG 2 cut(s) 429, 579
MaeII ACGT 3 cut(s) 542, 1004, 1269
MaeIII GTNAC 2 cut(s) 305, 434
MalI GATC 9 cut(s) 188, 624, 642, 738, 794, 942, 1154, 1207, 1221
MboI GATC 9 cut(s) 186, 622, 640, 736, 792, 940, 1152, 1205, 1219
MboII GAAGA 8 cut(s) 112, 115, 139, 395, 655, 684, 1177, 1260
MfeI CAATTG 1 cut(s) 1095
MflI RGATCY 4 cut(s) 736, 940, 1152, 1219
MhlI GDGCHC 4 cut(s) 256, 291, 427, 1188
MlyI GAGTC 4 cut(s) 302, 341, 772, 1187
MmeI TCCRAC 6 cut(s) 253, 633, 764, 1161, 1252, 1318
MroXI GAANNNNTTC 1 cut(s) 691
MseI TTAA 4 cut(s) 810, 897, 974, 1110
MspA1I CMGCKG 1 cut(s) 1040
MspI CCGG 6 cut(s) 249, 276, 360, 842, 992, 1033
MspR9I CCNGG 3 cut(s) 276, 361, 1034
MunI CAATTG 1 cut(s) 1095
Mva1269I GAATGC 1 cut(s) 1405
MwoI GCNNNNNNNGC 3 cut(s) 260, 1091, 1354
NciI CCSGG 3 cut(s) 276, 361, 1034
NcoI CCATGG 1 cut(s) 113
NdeII GATC 9 cut(s) 186, 622, 640, 736, 792, 940, 1152, 1205, 1219
NlaIII CATG 8 cut(s) 117, 524, 733, 751, 787, 873, 1193, 1413
NlaIV GGNNCC 3 cut(s) 253, 942, 996
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 1 cut(s) 873
PciI ACATGT 1 cut(s) 869
PciSI GCTCTTC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 1017
PctI GAATGC 1 cut(s) 1405
PdmI GAANNNNTTC 1 cut(s) 691
PflFI GACNNNGTC 1 cut(s) 311
PflMI CCANNNNNTGG 2 cut(s) 491, 1195
PfoI TCCNGGA 1 cut(s) 359
PinAI ACCGGT 1 cut(s) 841
PkrI GCNGC 4 cut(s) 445, 1039, 1042, 1087
PleI GAGTC 4 cut(s) 302, 340, 772, 1186
PpsI GAGTC 4 cut(s) 302, 340, 772, 1186
PscI ACATGT 1 cut(s) 869
Psp124BI GAGCTC 2 cut(s) 291, 1188
Psp1406I AACGTT 1 cut(s) 542
PspN4I GGNNCC 3 cut(s) 253, 942, 996
PspPI GGNCC 2 cut(s) 262, 567
PsuI RGATCY 4 cut(s) 736, 940, 1152, 1219
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 4 cut(s) 402, 846, 996, 1285
RsaNI GTAC 4 cut(s) 401, 845, 995, 1284
SacI GAGCTC 2 cut(s) 291, 1188
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 4 cut(s) 810, 897, 974, 1110
SatI GCNGC 4 cut(s) 444, 1038, 1041, 1086
Sau3AI GATC 9 cut(s) 186, 622, 640, 736, 792, 940, 1152, 1205, 1219
Sau96I GGNCC 2 cut(s) 262, 567
SchI GAGTC 4 cut(s) 302, 341, 772, 1187
ScrFI CCNGG 3 cut(s) 276, 361, 1034
SduI GDGCHC 4 cut(s) 256, 291, 427, 1188
SmlI CTYRAG 2 cut(s) 203, 696
SmoI CTYRAG 2 cut(s) 203, 696
SsiI CCGC 6 cut(s) 53, 265, 965, 969, 1040, 1085
SspMI CTAG 2 cut(s) 429, 579
SstI GAGCTC 2 cut(s) 291, 1188
StyD4I CCNGG 3 cut(s) 274, 359, 1032
StyI CCWWGG 2 cut(s) 113, 301
TaaI ACNGT 4 cut(s) 325, 440, 459, 1108
TaiI ACGT 3 cut(s) 545, 1007, 1272
TaqI TCGA 5 cut(s) 185, 330, 1176, 1376, 1389
TaqII GACCGA 1 cut(s) 301
TauI GCSGC 2 cut(s) 1043, 1088
Tru1I TTAA 4 cut(s) 810, 897, 974, 1110
Tru9I TTAA 4 cut(s) 810, 897, 974, 1110
TscAI CASTG 2 cut(s) 462, 1305
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 2 cut(s) 443, 1037
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 5 cut(s) 168, 544, 576, 1242, 1375
TspGWI ACGGA 1 cut(s) 1247
TspRI CASTG 2 cut(s) 462, 1305
Tth111I GACNNNGTC 1 cut(s) 311
Van91I CCANNNNNTGG 2 cut(s) 491, 1195
VneI GTGCAC 1 cut(s) 423
XapI RAATTY 3 cut(s) 155, 450, 687
XbaI TCTAGA 1 cut(s) 578
XceI RCATGY 1 cut(s) 873
XcmI CCANNNNNNNNNTGG 1 cut(s) 1360
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 691
XspI CTAG 2 cut(s) 429, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.