RLG00000027941

Anthocyanin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005947
Physical Location & Seq
Forward (+)
17027888 .. 17029303
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027941

Sequence Viewer

Length: 1416 bp
ATGGAGGGTTCTTGCAAAACGGCTAGGGTTGTTGGGCAATGCAAGGTTTCTCCACCACCAGGCTCAGTTCGTACCACCTCTCTCCCTCTCACTTTCTTCGACATTGTTTTCCTCTTCTGCGGTCCGGTTGAATTTGTATACTTTTATGAGTTCCCTCACCCTCTTCACCACTTCACTCAAACCATCCTCCCTAAGCTCAAACACTCTCTTTCCCTAACTCTCCAGCACTTCTTTCCCTTGGCCTCAAATCTCATCTGCCCTCCACCACCCTCCAAACCCTTTCTACATTACTCCGAGACTGACCGAAACTCACTCCTATTGACTATTGCCCAGTCCTCAAGCAACTTCAACCGCCTCACATCCCACCGTGTAAACAATGTTGCACAATCCCACTTCCTTGTTCCACCATTGCCACCAGCACGTGTGTTGGAGGATGGCACGCGTGTGGTCACTCCTGTAGCATTGCAACTCACTGTGTTCCCCAACTCCGGGATCTGCATTGGCATTAATTTTCTTCATGCATTGACTGATGGGAGTTCTTTGCATCATTTCATGAAGTCATGGGCATCTGTTTGTTTATCACAAGGAGTCAAGGCTTTGACTAGTACTCCCCCATCCCATAATAGAGGTTTGATTAAAGACCCATGCGGCCTTGAGAACAAGTTCTTAGCTGCATGGAGAAGTTGGACCCCTATCCCATGGGAGCTTCATATGAACCCATTCCATCCCTCCCTAACTGAAAATGTCCGAACCACATTCGTGTTGAGTAGACCAAAAATCGACAGACTTAAACAGTGGGTGTCTAGCTTATTCAGTGCTGTTCATGGTTCTAAGCCACCCCATATGTCATCATTTGTAGTTATATGCGCTTTGACATGGGTTTGTTTAGTCAAAGCAGAGGAGATCAATGATGATGAAATGCAATGCTACTTCAATTACTCGGCTGACTGCCGAAACCGGCTTGAGTATCCATTATCTAGTTCATATTTTGGGAACTGTTTATCAATACGTTCTACTCGAGTGAAGAAGAGTGAGCTAGTTAAGGAAAATGGACTCATTGTGGCGGTGGATGCTATAGGAAAAAATGTGAAAGATTTGGAGAGTGGGGTTTTGAGAGGAGCTGAGGAGTGGACTTCAGATTGGGAGAAGGGTACTAATAGTCCTCCAATGCATTTAACCTTGCTTGCTGGCTCACCAAGACTTGATTTTTATAATGACATTGATTTTGGGTGGGGGAGACCCAAAAAGAGTGTGGTTATAAACGTTGATTTTGATTTTCCCAGGTTTATTTACCTCGGTAATAGTAGAGAAGAGGAAGGTGGGTTTGAGATTGTCTTGGCATTTGAAAAGGAAAAAATGAAGTCCTTCAATTCCATCTTTGAACAAGCTTTGAAGCTCCCGGAATCGCATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747 GO:0033809
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

472

Amino Acids

52.98

Weight (kDa)

8.2

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 25 - 462 7.1e-45 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1212, 1259
AccI GTMKAC 2 cut(s) 138, 769
AccII CGCG 1 cut(s) 442
AciI CCGC 4 cut(s) 120, 352, 648, 1064
AclI AACGTT 1 cut(s) 1263
AclWI GGATC 1 cut(s) 500
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 1119
AcvI CACGTG 1 cut(s) 422
AfaI GTAC 3 cut(s) 73, 607, 1153
AfiI CCNNNNNNNGG 3 cut(s) 59, 488, 489
AflIII ACRYGT 2 cut(s) 421, 440
AgsI TTSAA 7 cut(s) 131, 349, 934, 1346, 1369, 1382, 1393
AhlI ACTAGT 1 cut(s) 602
AjnI CCWGG 2 cut(s) 58, 1280
AleI CACNNNNGTG 2 cut(s) 443, 758
AluBI AGCT 8 cut(s) 196, 671, 706, 807, 1036, 1121, 1388, 1396
AluI AGCT 8 cut(s) 196, 671, 706, 807, 1036, 1121, 1388, 1396
Alw26I GTCTC 2 cut(s) 290, 1231
AlwI GGATC 1 cut(s) 500
Ama87I CYCGRG 1 cut(s) 1017
AoxI GGCC 2 cut(s) 240, 649
ApeKI GCWGC 1 cut(s) 671
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 1208, 1240
AseI ATTAAT 1 cut(s) 507
Asp700I GAANNNNTTC 3 cut(s) 662, 719, 1364
AspLEI GCGC 1 cut(s) 869
AspS9I GGNCC 2 cut(s) 122, 687
AsuC2I CCSGG 2 cut(s) 490, 1400
AsuHPI GGTGA 3 cut(s) 149, 158, 1185
AvaI CYCGRG 1 cut(s) 1017
AvaII GGWCC 2 cut(s) 122, 687
BbrPI CACGTG 1 cut(s) 422
BbvCI CCTCAGC 1 cut(s) 1122
BbvI GCAGC 1 cut(s) 658
BccI CCATC 6 cut(s) 191, 428, 524, 622, 732, 1382
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 2 cut(s) 60, 1282
BciVI GTATCC 1 cut(s) 978
BcnI CCSGG 2 cut(s) 490, 1400
BcoDI GTCTC 2 cut(s) 290, 1231
BcuI ACTAGT 1 cut(s) 602
BfaI CTAG 5 cut(s) 24, 603, 804, 978, 1037
BfmI CTRYAG 2 cut(s) 456, 1074
BfuI GTATCC 1 cut(s) 978
BisI GCNGC 2 cut(s) 649, 672
BlsI GCNGC 2 cut(s) 650, 673
BmcAI AGTACT 1 cut(s) 607
Bme1390I CCNGG 4 cut(s) 60, 490, 1282, 1400
Bme18I GGWCC 2 cut(s) 122, 687
BmeT110I CYCGRG 1 cut(s) 1017
BmgT120I GGNCC 2 cut(s) 122, 687
BmiI GGNNCC 1 cut(s) 689
BmrFI CCNGG 4 cut(s) 60, 490, 1282, 1400
BmrI ACTGGG 1 cut(s) 325
BmsI GCATC 3 cut(s) 553, 575, 1060
BmuI ACTGGG 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 206
Bpu10I CCTNAGC 2 cut(s) 192, 1122
BpuEI CTTGAG 3 cut(s) 322, 674, 983
BpuMI CCSGG 2 cut(s) 490, 1400
BsaAI YACGTR 1 cut(s) 422
BsaI GGTCTC 1 cut(s) 1231
BsaJI CCNNGG 4 cut(s) 237, 698, 1280, 1294
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 488, 489
Bse118I RCCGGY 1 cut(s) 957
Bse1I ACTGG 1 cut(s) 331
Bse3DI GCAATG 4 cut(s) 44, 407, 461, 929
BseBI CCWGG 2 cut(s) 60, 1282
BseDI CCNNGG 4 cut(s) 237, 698, 1280, 1294
BseGI GGATG 6 cut(s) 183, 359, 439, 614, 724, 1075
BseLI CCNNNNNNNGG 3 cut(s) 59, 488, 489
BseMI GCAATG 4 cut(s) 44, 407, 461, 929
BseMII CTCAG 2 cut(s) 78, 1113
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 3 cut(s) 914, 1131, 1139
BseXI GCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 2 cut(s) 242, 651
BsiHKCI CYCGRG 1 cut(s) 1017
BsiSI CCGG 4 cut(s) 125, 489, 958, 1400
BslI CCNNNNNNNGG 3 cut(s) 59, 488, 489
BsmAI GTCTC 2 cut(s) 290, 1231
BsnI GGCC 2 cut(s) 242, 651
Bso31I GGTCTC 1 cut(s) 1231
BsoBI CYCGRG 1 cut(s) 1017
Bsp143I GATC 2 cut(s) 492, 903
Bsp19I CCATGG 1 cut(s) 698
BspACI CCGC 4 cut(s) 120, 352, 648, 1064
BspANI GGCC 2 cut(s) 242, 651
BspCNI CTCAG 2 cut(s) 77, 1114
BspFNI CGCG 1 cut(s) 442
BspHI TCATGA 1 cut(s) 552
BspLI GGNNCC 1 cut(s) 689
BspPI GGATC 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 1231
BsrDI GCAATG 4 cut(s) 44, 407, 461, 929
BsrFI RCCGGY 1 cut(s) 957
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 957
BssECI CCNNGG 4 cut(s) 237, 698, 1280, 1294
BssMI GATC 2 cut(s) 492, 903
BssNAI GTATAC 1 cut(s) 139
BssT1I CCWWGG 2 cut(s) 237, 698
Bst1107I GTATAC 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 60, 1282
Bst4CI ACNGT 4 cut(s) 368, 475, 795, 998
Bst6I CTCTTC 4 cut(s) 119, 168, 1022, 1305
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 3 cut(s) 440, 1185, 1189
BstDEI CTNAG 5 cut(s) 64, 192, 667, 831, 1122
BstDSI CCRYGG 1 cut(s) 698
BstF5I GGATG 6 cut(s) 183, 359, 439, 614, 724, 1075
BstFNI CGCG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 869
BstKTI GATC 2 cut(s) 495, 906
BstMAI GTCTC 2 cut(s) 290, 1231
BstMBI GATC 2 cut(s) 492, 903
BstMWI GCNNNNNNNGC 1 cut(s) 1070
BstNI CCWGG 2 cut(s) 60, 1282
BstSCI CCNGG 4 cut(s) 58, 488, 1280, 1398
BstSFI CTRYAG 2 cut(s) 456, 1074
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 1 cut(s) 658
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BstZ17I GTATAC 1 cut(s) 139
BsuI GTATCC 1 cut(s) 978
BsuRI GGCC 2 cut(s) 242, 651
BtgI CCRYGG 1 cut(s) 698
BtsCI GGATG 6 cut(s) 183, 359, 439, 614, 724, 1075
BtsIMutI CAGTG 3 cut(s) 471, 800, 820
Cac8I GCNNGC 3 cut(s) 440, 1185, 1189
CciI TCATGA 1 cut(s) 552
CfoI GCGC 1 cut(s) 869
Cfr10I RCCGGY 1 cut(s) 957
Cfr13I GGNCC 2 cut(s) 122, 687
CpoI CGGWCCG 1 cut(s) 122
Csp6I GTAC 3 cut(s) 72, 606, 1152
CspI CGGWCCG 1 cut(s) 122
CviAII CATG 8 cut(s) 518, 553, 561, 645, 675, 699, 824, 876
CviQI GTAC 3 cut(s) 72, 606, 1152
DdeI CTNAG 5 cut(s) 64, 192, 667, 831, 1122
DpnI GATC 2 cut(s) 494, 905
DpnII GATC 2 cut(s) 492, 903
Eam1104I CTCTTC 4 cut(s) 119, 168, 1022, 1305
EarI CTCTTC 4 cut(s) 119, 168, 1022, 1305
Eco130I CCWWGG 2 cut(s) 237, 698
Eco31I GGTCTC 1 cut(s) 1231
Eco47I GGWCC 2 cut(s) 122, 687
Eco57I CTGAAG 1 cut(s) 1119
Eco72I CACGTG 1 cut(s) 422
Eco88I CYCGRG 1 cut(s) 1017
EcoRII CCWGG 2 cut(s) 58, 1280
EcoT14I CCWWGG 2 cut(s) 237, 698
EcoT22I ATGCAT 2 cut(s) 523, 1173
ErhI CCWWGG 2 cut(s) 237, 698
FaeI CATG 8 cut(s) 521, 556, 564, 648, 678, 702, 827, 879
FatI CATG 8 cut(s) 517, 552, 560, 644, 674, 698, 823, 875
FauNDI CATATG 2 cut(s) 711, 843
FblI GTMKAC 2 cut(s) 138, 769
Fnu4HI GCNGC 2 cut(s) 649, 672
FokI GGATG 6 cut(s) 170, 346, 446, 601, 711, 1082
Fsp4HI GCNGC 2 cut(s) 649, 672
FspBI CTAG 5 cut(s) 24, 603, 804, 978, 1037
GlaI GCGC 1 cut(s) 868
GluI GCNGC 2 cut(s) 649, 672
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 2 cut(s) 242, 651
HapII CCGG 4 cut(s) 125, 489, 958, 1400
HhaI GCGC 1 cut(s) 869
Hin1II CATG 8 cut(s) 521, 556, 564, 648, 678, 702, 827, 879
Hin6I GCGC 1 cut(s) 867
HinP1I GCGC 1 cut(s) 867
HindIII AAGCTT 1 cut(s) 1386
HinfI GANTC 3 cut(s) 588, 1053, 1403
HpaII CCGG 4 cut(s) 125, 489, 958, 1400
HphI GGTGA 3 cut(s) 149, 158, 1185
Hpy166II GTNNAC 4 cut(s) 139, 373, 770, 1131
Hpy188I TCNGA 3 cut(s) 295, 749, 1138
Hpy188III TCNNGA 1 cut(s) 553
Hpy8I GTNNAC 4 cut(s) 139, 373, 770, 1131
HpyAV CCTTC 3 cut(s) 1141, 1310, 1375
HpyCH4III ACNGT 4 cut(s) 368, 475, 795, 998
HpyCH4IV ACGT 3 cut(s) 421, 1009, 1263
HpyF10VI GCNNNNNNNGC 1 cut(s) 1070
HpyF3I CTNAG 5 cut(s) 64, 192, 667, 831, 1122
HpySE526I ACGT 3 cut(s) 421, 1009, 1263
Hsp92II CATG 8 cut(s) 521, 556, 564, 648, 678, 702, 827, 879
HspAI GCGC 1 cut(s) 867
Kzo9I GATC 2 cut(s) 492, 903
LmnI GCTCC 3 cut(s) 703, 1118, 1401
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 3 cut(s) 553, 575, 1060
MaeI CTAG 5 cut(s) 24, 603, 804, 978, 1037
MaeII ACGT 3 cut(s) 421, 1009, 1263
MaeIII GTNAC 1 cut(s) 448
MalI GATC 2 cut(s) 494, 905
MboI GATC 2 cut(s) 492, 903
MboII GAAGA 7 cut(s) 88, 106, 155, 506, 1036, 1039, 1322
MflI RGATCY 1 cut(s) 492
MluCI AATT 4 cut(s) 131, 508, 934, 1369
MluI ACGCGT 1 cut(s) 440
MlyI GAGTC 2 cut(s) 597, 1047
MmeI TCCRAC 2 cut(s) 408, 665
Mph1103I ATGCAT 2 cut(s) 523, 1173
MroXI GAANNNNTTC 3 cut(s) 662, 719, 1364
MseI TTAA 5 cut(s) 507, 636, 789, 1041, 1175
MslI CAYNNNNRTG 2 cut(s) 443, 758
MspI CCGG 4 cut(s) 125, 489, 958, 1400
MspR9I CCNGG 4 cut(s) 60, 490, 1282, 1400
MvaI CCWGG 2 cut(s) 60, 1282
MvnI CGCG 1 cut(s) 442
MwoI GCNNNNNNNGC 1 cut(s) 1070
NciI CCSGG 2 cut(s) 490, 1400
NcoI CCATGG 1 cut(s) 698
NdeI CATATG 2 cut(s) 711, 843
NdeII GATC 2 cut(s) 492, 903
NlaIII CATG 8 cut(s) 521, 556, 564, 648, 678, 702, 827, 879
NlaIV GGNNCC 1 cut(s) 689
NmeAIII GCCGAG 1 cut(s) 920
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 2 cut(s) 523, 1173
OliI CACNNNNGTG 2 cut(s) 443, 758
PaeR7I CTCGAG 1 cut(s) 1017
PagI TCATGA 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 1015
PdmI GAANNNNTTC 3 cut(s) 662, 719, 1364
PfeI GAWTC 1 cut(s) 1403
PfoI TCCNGGA 2 cut(s) 488, 1398
PkrI GCNGC 2 cut(s) 650, 673
PleI GAGTC 2 cut(s) 596, 1047
PmaCI CACGTG 1 cut(s) 422
PmlI CACGTG 1 cut(s) 422
PpsI GAGTC 2 cut(s) 596, 1047
Ppu21I YACGTR 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 507
PsiI TTATAA 2 cut(s) 1212, 1259
Psp1406I AACGTT 1 cut(s) 1263
Psp6I CCWGG 2 cut(s) 58, 1280
PspCI CACGTG 1 cut(s) 422
PspGI CCWGG 2 cut(s) 58, 1280
PspN4I GGNNCC 1 cut(s) 689
PspPI GGNCC 2 cut(s) 122, 687
PspXI VCTCGAGB 1 cut(s) 1017
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 3 cut(s) 73, 607, 1153
RsaNI GTAC 3 cut(s) 72, 606, 1152
RseI CAYNNNNRTG 2 cut(s) 443, 758
Rsr2I CGGWCCG 1 cut(s) 122
RsrII CGGWCCG 1 cut(s) 122
SaqAI TTAA 5 cut(s) 507, 636, 789, 1041, 1175
SatI GCNGC 2 cut(s) 649, 672
Sau3AI GATC 2 cut(s) 492, 903
Sau96I GGNCC 2 cut(s) 122, 687
ScaI AGTACT 1 cut(s) 607
SchI GAGTC 2 cut(s) 597, 1047
ScrFI CCNGG 4 cut(s) 60, 490, 1282, 1400
SfaNI GCATC 3 cut(s) 553, 575, 1060
SfcI CTRYAG 2 cut(s) 456, 1074
Sfr274I CTCGAG 1 cut(s) 1017
SinI GGWCC 2 cut(s) 122, 687
SlaI CTCGAG 1 cut(s) 1017
SmiMI CAYNNNNRTG 2 cut(s) 443, 758
SmlI CTYRAG 4 cut(s) 337, 653, 962, 1017
SmoI CTYRAG 4 cut(s) 337, 653, 962, 1017
SpeI ACTAGT 1 cut(s) 602
Sse9I AATT 4 cut(s) 131, 508, 934, 1369
SsiI CCGC 4 cut(s) 120, 352, 648, 1064
SspMI CTAG 5 cut(s) 24, 603, 804, 978, 1037
StyD4I CCNGG 4 cut(s) 58, 488, 1280, 1398
StyI CCWWGG 2 cut(s) 237, 698
TaaI ACNGT 4 cut(s) 368, 475, 795, 998
TaiI ACGT 3 cut(s) 424, 1012, 1266
TaqI TCGA 3 cut(s) 99, 780, 1018
TaqII GACCGA 1 cut(s) 318
TasI AATT 4 cut(s) 131, 508, 934, 1369
TatI WGTACW 1 cut(s) 605
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 1 cut(s) 1403
Tru1I TTAA 5 cut(s) 507, 636, 789, 1041, 1175
Tru9I TTAA 5 cut(s) 507, 636, 789, 1041, 1175
TscAI CASTG 3 cut(s) 478, 800, 820
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 1 cut(s) 671
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 9 cut(s) 506, 541, 569, 698, 728, 812, 930, 972, 1373
TspRI CASTG 3 cut(s) 478, 800, 820
VpaK11BI GGWCC 2 cut(s) 122, 687
VspI ATTAAT 1 cut(s) 507
XapI RAATTY 1 cut(s) 131
XcmI CCANNNNNNNNNTGG 1 cut(s) 1249
XhoI CTCGAG 1 cut(s) 1017
XmiI GTMKAC 2 cut(s) 138, 769
XmnI GAANNNNTTC 3 cut(s) 662, 719, 1364
XspI CTAG 5 cut(s) 24, 603, 804, 978, 1037
ZrmI AGTACT 1 cut(s) 607
Zsp2I ATGCAT 2 cut(s) 523, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.