Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005947

Physical Location & Seq

Genomic Coordinates Reverse (-)

1063638 .. 1064126

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0005400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGATACTATACTTACTCTTACTACAATTCAATGCAGGGTTTAAATTGACACTCACCTTGAGCGTATCACAATCTGACAGGGAAGATGACGATATAGATACCATGTCCCTTAAAGAGGAAGACTACGACGTTGGTCCGCTTGTTGATGAGAATCATTCTGTTGAAAATCCACCATCTGACGGCCTGCGAAGAAATGCAAGGCGGACTTGTAGAGGTCTTGTTGACTTTATCAGGATCAATAGAAGCCATTCGGAAACCAATGGCAATTCAGCTGCATTCAAGGGAGGCAATAGAAGGCAATCGACAAGCAGTGGCAATCCAGCTGTTATCAGAGGAAGAACCGAGAAAGCTAGGAGAAGACGTAGAGGAACTCAGAGTCAGGAAGTCTCAGCTGCAGTGAACGAGGGCACATGTCCAGAAAACCCTCCCCCCAATCCAGCGAATGAGGCCACACAGAAAACCCTCCCCCCAATCCTCTTGCTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

162

Amino Acids

17.93

Weight (kDa)

7.81

Isoelectric Point (pI)

65.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03495 AT1G03940
fragaria_vesca	FvH4_6g44510 FvH4_7g00870
malus_domestica	MD07G1008000.v1.1 MD09G1097600.v1.1 MD17G1085800.v1.1 MD17G1085900.v1.1
prunus_persica	Prupe.2G010800_v2.0.a1
pyrus_communis	pycom07g00670
rosa_chinensis	RchiOBHm_Chr1g0315741 RchiOBHm_Chr1g0358611
rosa_laevigata	RLG00000027941 RLG00000030735
rosa_multiflora	Rmu_sc0001609.1_g000021 Rmu_sc0004180.1_g000004
rosa_roxburghii	Rroxscaffold_4G00331460
rosa_rugosa	Rorug01G0005400
rosa_samantha	Rh1AG016200 Rh1AG278100 Rh1BG008600 Rh1BG244600 Rh1CG261500 Rh1DG009200 Rh1DG272900
rosa_wichuraiana	Rw1G000950 Rw1G024680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	137, 202
AclWI	GGATC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	115, 179
AflIII	ACRYGT	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	31, 164, 280
AluBI	AGCT	4 cut(s)	272, 323, 350, 392
AluI	AGCT	4 cut(s)	272, 323, 350, 392
Alw26I	GTCTC	1 cut(s)	391
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	2 cut(s)	181, 447
ApeKI	GCWGC	2 cut(s)	272, 392
Asp700I	GAANNNNTTC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	410
BbsI	GAAGAC	2 cut(s)	126, 364
BbvI	GCAGC	2 cut(s)	259, 379
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	2 cut(s)	273, 393
BlsI	GCNGC	2 cut(s)	274, 394
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	2 cut(s)	126, 364
BpuEI	CTTGAG	1 cut(s)	79
BsaBI	GATNNNNATC	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 179
Bse8I	GATNNNNATC	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	115, 179
BseMII	CTCAG	2 cut(s)	386, 402
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	259, 379
BshFI	GGCC	2 cut(s)	183, 449
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	115, 179
BsmAI	GTCTC	1 cut(s)	391
BsmFI	GGGAC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	183, 449
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	1 cut(s)	234
BspACI	CCGC	2 cut(s)	137, 202
BspANI	GGCC	2 cut(s)	183, 449
BspCNI	CTCAG	2 cut(s)	385, 401
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	1 cut(s)	242
BssMI	GATC	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	372, 388
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	414
BstPAI	GACNNNNGTC	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	2 cut(s)	259, 379
BstV2I	GAAGAC	2 cut(s)	126, 364
BsuRI	GGCC	2 cut(s)	183, 449
BtsI	GCAGTG	2 cut(s)	316, 402
BtsIMutI	CAGTG	2 cut(s)	316, 402
Cac8I	GCNNGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	134
CviAII	CATG	2 cut(s)	103, 411
CviJI	RGCY	7 cut(s)	183, 246, 272, 323, 350, 392, 449
CviKI_1	RGCY	7 cut(s)	183, 246, 272, 323, 350, 392, 449
DdeI	CTNAG	2 cut(s)	372, 388
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
DraI	TTTAAA	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	113
FaeI	CATG	2 cut(s)	106, 414
FaiI	YATR	4 cut(s)	10, 95, 104, 412
FalI	AAGNNNNNCTT	2 cut(s)	190, 222
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	2 cut(s)	102, 410
Fnu4HI	GCNGC	2 cut(s)	273, 393
Fsp4HI	GCNGC	2 cut(s)	273, 393
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	2 cut(s)	273, 393
HaeIII	GGCC	2 cut(s)	183, 449
Hin1II	CATG	2 cut(s)	106, 414
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	151, 376
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	223, 400
Hpy188I	TCNGA	5 cut(s)	76, 178, 253, 332, 375
Hpy188III	TCNNGA	3 cut(s)	232, 380, 416
Hpy8I	GTNNAC	2 cut(s)	223, 400
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	288
HpyCH4IV	ACGT	2 cut(s)	129, 361
HpyCH4V	TGCA	4 cut(s)	35, 197, 275, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	2 cut(s)	372, 388
HpySE526I	ACGT	2 cut(s)	129, 361
Hsp92II	CATG	2 cut(s)	106, 414
Kzo9I	GATC	1 cut(s)	234
LpnPI	CCDG	8 cut(s)	21, 64, 197, 217, 333, 365, 429, 450
Lsp1109I	GCAGC	2 cut(s)	259, 379
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	2 cut(s)	129, 361
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	5 cut(s)	95, 131, 201, 348, 369
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	4 cut(s)	26, 44, 265, 484
MlyI	GAGTC	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	2 cut(s)	42, 111
MspA1I	CMGCKG	3 cut(s)	272, 323, 392
Mva1269I	GAATGC	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	2 cut(s)	106, 414
NspI	RCATGY	1 cut(s)	414
PciI	ACATGT	1 cut(s)	410
PctI	GAATGC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	274, 394
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PscI	ACATGT	1 cut(s)	410
PshAI	GACNNNNGTC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	397
PvuII	CAGCTG	3 cut(s)	272, 323, 392
SaqAI	TTAA	2 cut(s)	42, 111
SatI	GCNGC	2 cut(s)	273, 393
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	8 cut(s)	59, 132, 217, 274, 325, 352, 364, 394
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	4 cut(s)	26, 44, 265, 484
SsiI	CCGC	2 cut(s)	137, 202
SspMI	CTAG	1 cut(s)	351
TaiI	ACGT	2 cut(s)	132, 364
TaqI	TCGA	1 cut(s)	302
TasI	AATT	4 cut(s)	26, 44, 265, 484
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	2 cut(s)	42, 111
Tru9I	TTAA	2 cut(s)	42, 111
TscAI	CASTG	2 cut(s)	316, 402
TseI	GCWGC	2 cut(s)	272, 392
TspRI	CASTG	2 cut(s)	316, 402
VpaK11BI	GGWCC	1 cut(s)	134
XagI	CCTNNNNNAGG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.