Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004180.1

Orthogroup ID

OG0005947

Physical Location & Seq

Genomic Coordinates Reverse (-)

17693 .. 19060

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004180.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atggctcaactctccaaactcaatgttattgagcaatgccaagtctctaccccgcaaaactcatctactccacaagcttgttatcatctccctctaactttccttgacataccatggctcttcttctctccaagccaagctcttttcttctatgaattcccatatcccacttctcatttcacatcgatcactctaccaaatctcaagcactctctctcccttactctccaagtcttttacccttttgccggagccctactggcccgccccgaacccggaaaacccgagctcgtctactcccaaggtgactcggtctcattcaccgtcgtcgagtcaaatgcagacttcggctatctttccgggaattaccaaagatatgttgaagagttcaacacactagtacctcaactggcttcaactggtgcacctagtagtaactgtgctgccaaaattccactgttgagcgttcaaattacattgttcccaaattgtggcatttgcattggacttgcatatcatcatgttgttgctgacaagagaacgttcaacaatttcatcaagacttgggctcttatgatcgtaaggccattgttgatccgtataagttggagggggtttggccgggcagaggcgataaggagtgagttgttgggggacaatggaattgttgttgcggcaagagcaattggaaatacggttaagaagttagacaaggttatttttggaggggcagagaaatggatctcggattggaagattatgttcgagtcggagctccatgttatggtatcaggatcaccgaaagtggatctttatgaaacggattttgggttgggaagacccaaaaagatagaggacgttggagttgatggtactaaagctattgcactgactgagagtagagatgtatcaggtggcattgaggttggattagtgctacccaagcctcaaatggattatttctcaacttttttcattgagggactgaatgctactccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

333

Amino Acids

36.77

Weight (kDa)

6.09

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03495 AT1G03940
fragaria_vesca	FvH4_6g44510 FvH4_7g00870
malus_domestica	MD07G1008000.v1.1 MD09G1097600.v1.1 MD17G1085800.v1.1 MD17G1085900.v1.1
prunus_persica	Prupe.2G010800_v2.0.a1
pyrus_communis	pycom07g00670
rosa_chinensis	RchiOBHm_Chr1g0315741 RchiOBHm_Chr1g0358611
rosa_laevigata	RLG00000027941 RLG00000030735
rosa_multiflora	Rmu_sc0001609.1_g000021 Rmu_sc0004180.1_g000004
rosa_roxburghii	Rroxscaffold_4G00331460
rosa_rugosa	Rorug01G0005400
rosa_samantha	Rh1AG016200 Rh1AG278100 Rh1BG008600 Rh1BG244600 Rh1CG261500 Rh1DG009200 Rh1DG272900
rosa_wichuraiana	Rw1G000950 Rw1G024680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	491, 784
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	3 cut(s)	53, 265, 674
AclI	AACGTT	1 cut(s)	542
AclWI	GGATC	4 cut(s)	589, 749, 802, 816
AcoI	YGGCCR	1 cut(s)	619
AcsI	RAATTY	2 cut(s)	155, 450
AfaI	GTAC	2 cut(s)	402, 874
AfiI	CCNNNNNNNGG	5 cut(s)	248, 275, 491, 628, 784
AgsI	TTSAA	5 cut(s)	383, 391, 417, 470, 547
AhlI	ACTAGT	1 cut(s)	397
AjuI	GAANNNNNNNTTGG	2 cut(s)	810, 842
AluBI	AGCT	5 cut(s)	77, 140, 289, 775, 881
AluI	AGCT	5 cut(s)	77, 140, 289, 775, 881
Alw21I	GWGCWC	3 cut(s)	291, 427, 777
Alw26I	GTCTC	2 cut(s)	49, 319
Alw44I	GTGCAC	1 cut(s)	423
AlwI	GGATC	4 cut(s)	589, 749, 802, 816
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	3 cut(s)	261, 584, 619
ApaLI	GTGCAC	1 cut(s)	423
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	2 cut(s)	155, 450
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	3 cut(s)	276, 361, 623
AsuHPI	GGTGA	3 cut(s)	313, 317, 789
AvaI	CYCGRG	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	427
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BanII	GRGCYC	4 cut(s)	256, 291, 571, 777
BbsI	GAAGAC	1 cut(s)	844
Bbv12I	GWGCWC	3 cut(s)	291, 427, 777
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	1 cut(s)	863
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BcnI	CCSGG	3 cut(s)	276, 361, 623
BcoDI	GTCTC	2 cut(s)	49, 319
BcuI	ACTAGT	1 cut(s)	397
BfaI	CTAG	2 cut(s)	398, 429
BglI	GCCNNNNNGGC	1 cut(s)	260
BisI	GCNGC	2 cut(s)	444, 675
BlsI	GCNGC	2 cut(s)	445, 676
Bme1390I	CCNGG	3 cut(s)	276, 361, 623
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	3 cut(s)	276, 361, 623
BpiI	GAAGAC	1 cut(s)	844
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	3 cut(s)	276, 361, 623
Bsa29I	ATCGAT	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	113, 301
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 275, 491, 628, 784
Bse1I	ACTGG	3 cut(s)	264, 414, 424
Bse3DI	GCAATG	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	113, 301
BseLI	CCNNNNNNNGG	5 cut(s)	248, 275, 491, 628, 784
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	3 cut(s)	264, 414, 424
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	1 cut(s)	430
BshFI	GGCC	3 cut(s)	263, 586, 621
BshVI	ATCGAT	1 cut(s)	185
BsiHKAI	GWGCWC	3 cut(s)	291, 427, 777
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	4 cut(s)	249, 276, 360, 622
BslFI	GGGAC	2 cut(s)	668, 996
BslI	CCNNNNNNNGG	5 cut(s)	248, 275, 491, 628, 784
BsmAI	GTCTC	2 cut(s)	49, 319
BsmFI	GGGAC	2 cut(s)	668, 996
BsmI	GAATGC	1 cut(s)	994
BsnI	GGCC	3 cut(s)	263, 586, 621
Bso31I	GGTCTC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	5 cut(s)	256, 291, 427, 571, 777
Bsp143I	GATC	6 cut(s)	186, 576, 594, 741, 794, 808
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	3 cut(s)	53, 265, 674
BspANI	GGCC	3 cut(s)	263, 586, 621
BspCNI	CTCAG	1 cut(s)	886
BspDI	ATCGAT	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	4 cut(s)	589, 749, 802, 816
BspQI	GCTCTTC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	41
BsrI	ACTGG	3 cut(s)	264, 414, 424
BssECI	CCNNGG	2 cut(s)	113, 301
BssMI	GATC	6 cut(s)	186, 576, 594, 741, 794, 808
BssT1I	CCWWGG	2 cut(s)	113, 301
Bst4CI	ACNGT	4 cut(s)	325, 440, 459, 697
Bst6I	CTCTTC	2 cut(s)	125, 378
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	894
BstDSI	CCRYGG	1 cut(s)	113
BstKTI	GATC	6 cut(s)	189, 579, 597, 744, 797, 811
BstMAI	GTCTC	2 cut(s)	49, 319
BstMBI	GATC	6 cut(s)	186, 576, 594, 741, 794, 808
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 680, 943
BstSCI	CCNGG	3 cut(s)	274, 359, 621
BstSLI	GKGCMC	1 cut(s)	427
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	844
BstX2I	RGATCY	2 cut(s)	741, 808
BstYI	RGATCY	2 cut(s)	741, 808
Bsu15I	ATCGAT	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	263, 586, 621
BsuTUI	ATCGAT	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	113
BtsIMutI	CAGTG	2 cut(s)	455, 887
Cac8I	GCNNGC	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	401, 873
CviAII	CATG	4 cut(s)	114, 521, 779, 999
CviQI	GTAC	2 cut(s)	401, 873
DdeI	CTNAG	1 cut(s)	894
DpnI	GATC	6 cut(s)	188, 578, 596, 743, 796, 810
DpnII	GATC	6 cut(s)	186, 576, 594, 741, 794, 808
EaeI	YGGCCR	1 cut(s)	619
Eam1104I	CTCTTC	2 cut(s)	125, 378
EarI	CTCTTC	2 cut(s)	125, 378
Ecl136II	GAGCTC	2 cut(s)	289, 775
Eco130I	CCWWGG	2 cut(s)	113, 301
Eco24I	GRGCYC	4 cut(s)	256, 291, 571, 777
Eco31I	GGTCTC	1 cut(s)	319
Eco53kI	GAGCTC	2 cut(s)	289, 775
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	2 cut(s)	289, 775
EcoRI	GAATTC	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	113, 301
EcoT38I	GRGCYC	4 cut(s)	256, 291, 571, 777
ErhI	CCWWGG	2 cut(s)	113, 301
FaeI	CATG	4 cut(s)	117, 524, 782, 1002
FalI	AAGNNNNNCTT	2 cut(s)	795, 827
FaqI	GGGAC	2 cut(s)	668, 996
FatI	CATG	4 cut(s)	113, 520, 778, 998
FauI	CCCGC	2 cut(s)	60, 272
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	444, 675
FriOI	GRGCYC	4 cut(s)	256, 291, 571, 777
Fsp4HI	GCNGC	2 cut(s)	444, 675
FspBI	CTAG	2 cut(s)	398, 429
GluI	GCNGC	2 cut(s)	444, 675
HaeIII	GGCC	3 cut(s)	263, 586, 621
HapII	CCGG	4 cut(s)	249, 276, 360, 622
Hin1II	CATG	4 cut(s)	117, 524, 782, 1002
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	3 cut(s)	308, 332, 767
HpaII	CCGG	4 cut(s)	249, 276, 360, 622
HphI	GGTGA	3 cut(s)	313, 317, 789
Hpy166II	GTNNAC	2 cut(s)	295, 425
Hpy188I	TCNGA	2 cut(s)	748, 772
Hpy188III	TCNNGA	2 cut(s)	559, 792
Hpy8I	GTNNAC	2 cut(s)	295, 425
Hpy99I	CGWCG	2 cut(s)	329, 332
HpyCH4III	ACNGT	4 cut(s)	325, 440, 459, 697
HpyCH4IV	ACGT	2 cut(s)	542, 858
HpyCH4V	TGCA	5 cut(s)	341, 425, 501, 512, 887
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 680, 943
HpyF3I	CTNAG	1 cut(s)	894
HpySE526I	ACGT	2 cut(s)	542, 858
Hsp92II	CATG	4 cut(s)	117, 524, 782, 1002
Kzo9I	GATC	6 cut(s)	186, 576, 594, 741, 794, 808
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	3 cut(s)	251, 772, 780
LpnPI	CCDG	9 cut(s)	245, 262, 289, 373, 395, 405, 635, 777, 897
Lsp1109I	GCAGC	1 cut(s)	430
MaeI	CTAG	2 cut(s)	398, 429
MaeII	ACGT	2 cut(s)	542, 858
MaeIII	GTNAC	2 cut(s)	305, 434
MalI	GATC	6 cut(s)	188, 578, 596, 743, 796, 810
MboI	GATC	6 cut(s)	186, 576, 594, 741, 794, 808
MboII	GAAGA	6 cut(s)	112, 115, 139, 395, 766, 849
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	2 cut(s)	741, 808
MhlI	GDGCHC	5 cut(s)	256, 291, 427, 571, 777
MluCI	AATT	8 cut(s)	155, 364, 450, 471, 487, 550, 663, 684
MlyI	GAGTC	3 cut(s)	302, 341, 776
MmeI	TCCRAC	4 cut(s)	587, 750, 841, 907
MnlI	CCTC	9 cut(s)	102, 414, 603, 622, 719, 847, 916, 957, 973
MseI	TTAA	1 cut(s)	699
MspI	CCGG	4 cut(s)	249, 276, 360, 622
MspR9I	CCNGG	3 cut(s)	276, 361, 623
MunI	CAATTG	1 cut(s)	684
Mva1269I	GAATGC	1 cut(s)	994
MwoI	GCNNNNNNNGC	3 cut(s)	260, 680, 943
NciI	CCSGG	3 cut(s)	276, 361, 623
NcoI	CCATGG	1 cut(s)	113
NdeII	GATC	6 cut(s)	186, 576, 594, 741, 794, 808
NlaIII	CATG	4 cut(s)	117, 524, 782, 1002
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	125
PctI	GAATGC	1 cut(s)	994
PflFI	GACNNNGTC	1 cut(s)	311
PflMI	CCANNNNNTGG	2 cut(s)	491, 784
PfoI	TCCNGGA	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	445, 676
PleI	GAGTC	3 cut(s)	302, 340, 775
PpsI	GAGTC	3 cut(s)	302, 340, 775
Psp124BI	GAGCTC	2 cut(s)	291, 777
Psp1406I	AACGTT	1 cut(s)	542
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	262
PsuI	RGATCY	2 cut(s)	741, 808
PsyI	GACNNNGTC	1 cut(s)	311
RsaI	GTAC	2 cut(s)	402, 874
RsaNI	GTAC	2 cut(s)	401, 873
SacI	GAGCTC	2 cut(s)	291, 777
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	2 cut(s)	444, 675
Sau3AI	GATC	6 cut(s)	186, 576, 594, 741, 794, 808
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	3 cut(s)	302, 341, 776
ScrFI	CCNGG	3 cut(s)	276, 361, 623
SduI	GDGCHC	5 cut(s)	256, 291, 427, 571, 777
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
SpeI	ACTAGT	1 cut(s)	397
Sse9I	AATT	8 cut(s)	155, 364, 450, 471, 487, 550, 663, 684
SsiI	CCGC	3 cut(s)	53, 265, 674
SspMI	CTAG	2 cut(s)	398, 429
SstI	GAGCTC	2 cut(s)	291, 777
StyD4I	CCNGG	3 cut(s)	274, 359, 621
StyI	CCWWGG	2 cut(s)	113, 301
TaaI	ACNGT	4 cut(s)	325, 440, 459, 697
TaiI	ACGT	2 cut(s)	545, 861
TaqI	TCGA	3 cut(s)	185, 330, 765
TaqII	GACCGA	1 cut(s)	301
TasI	AATT	8 cut(s)	155, 364, 450, 471, 487, 550, 663, 684
TauI	GCSGC	1 cut(s)	677
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	2 cut(s)	462, 894
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	4 cut(s)	168, 544, 831, 964
TspGWI	ACGGA	2 cut(s)	587, 836
TspRI	CASTG	2 cut(s)	462, 894
Tth111I	GACNNNGTC	1 cut(s)	311
Van91I	CCANNNNNTGG	2 cut(s)	491, 784
VneI	GTGCAC	1 cut(s)	423
XapI	RAATTY	2 cut(s)	155, 450
XcmI	CCANNNNNNNNNTGG	1 cut(s)	949
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	2 cut(s)	398, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.