Rh1AG278100

Anthocyanin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005947
Physical Location & Seq
Reverse (-)
50642654 .. 50644243
1590 bp
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UTR
Exon/CDS
Intron
Rh1AG278100.1

Sequence Viewer

Length: 645 bp
ATGGAGGGTTCTTGCAACCCGGCTAGGGTTGTTGGGCAATGCAAGGTTTCTCCACCACCAGGCTCAGTTCCTACCACCTCTCTCCCTCTCACTTTCTTTGACATTGTTTTCCTCTTCTGCGGTTCGGTTGAATTTGTATACTTTTATGAGTTCCCTCACCCTCTTCACCACATCACCCAAACCGTCCTCCCTAAGCTCAGACACTCTCTTTCCCTAACTCTCCAGCACTTCTTTCCCTTGGCCTCAAATCTCATCTGCCCTCCACCACCCTCCAAACCCTTTCTACATTACTCCGAGACTGACCGAACCTCACTCCTATTGACCATTGCCGAGTCCTCAAGCAACTTCAACCGCCTCACATCCCACCGTGTAAACAATGTTGCACAATCCCACTTCCTTGTTCCACCATTGCCACCAGCACGTGTGTTGGAGGATGGCACGCGTGTGGTCACTCCTGTAGCATTGCAACTCACTGTGTTCCCCAACTCCGGGATCTGCATTGGCATTAATTTTCTTCATGCATTGACTGATGGGAGTTCTTTGCATCATTTCATGAAGTCATGGGCATCTGTTTGTTTATCACAAGGAGTCAAGGCTTTGACTAGTACTCCCCCATCCCATAATAGAGAACGACCCATGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747 GO:0033809
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

214

Amino Acids

23.59

Weight (kDa)

8.61

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 23 - 210 7.6e-19 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AccII CGCG 1 cut(s) 442
AciI CCGC 2 cut(s) 120, 352
AclWI GGATC 1 cut(s) 500
AcsI RAATTY 1 cut(s) 131
AcvI CACGTG 1 cut(s) 422
AfaI GTAC 1 cut(s) 607
AfiI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
AflIII ACRYGT 2 cut(s) 421, 440
AgsI TTSAA 2 cut(s) 131, 349
AhlI ACTAGT 1 cut(s) 602
AjnI CCWGG 1 cut(s) 58
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 500
AoxI GGCC 1 cut(s) 240
ApoI RAATTY 1 cut(s) 131
AseI ATTAAT 1 cut(s) 507
AsuC2I CCSGG 2 cut(s) 20, 490
AsuHPI GGTGA 3 cut(s) 149, 158, 166
BbrPI CACGTG 1 cut(s) 422
BccI CCATC 3 cut(s) 428, 524, 622
BciT130I CCWGG 1 cut(s) 60
BcnI CCSGG 2 cut(s) 20, 490
BcoDI GTCTC 1 cut(s) 290
BcuI ACTAGT 1 cut(s) 602
BfaI CTAG 2 cut(s) 24, 603
BfmI CTRYAG 2 cut(s) 456, 641
BmcAI AGTACT 1 cut(s) 607
Bme1390I CCNGG 3 cut(s) 20, 60, 490
BmrFI CCNGG 3 cut(s) 20, 60, 490
BmsI GCATC 2 cut(s) 553, 575
BpmI CTGGAG 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 322
BpuMI CCSGG 2 cut(s) 20, 490
BsaAI YACGTR 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
Bse3DI GCAATG 4 cut(s) 44, 324, 407, 461
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 3 cut(s) 359, 439, 614
BseLI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
BseMI GCAATG 4 cut(s) 44, 324, 407, 461
BseMII CTCAG 2 cut(s) 78, 211
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 1 cut(s) 242
BsiSI CCGG 2 cut(s) 20, 489
BslI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 492
BspACI CCGC 2 cut(s) 120, 352
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 2 cut(s) 77, 210
BspFNI CGCG 1 cut(s) 442
BspHI TCATGA 1 cut(s) 552
BspPI GGATC 1 cut(s) 500
BsrDI GCAATG 4 cut(s) 44, 324, 407, 461
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 1 cut(s) 492
BssNAI GTATAC 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 237
Bst1107I GTATAC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 3 cut(s) 184, 368, 475
Bst6I CTCTTC 2 cut(s) 119, 168
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 440
BstDEI CTNAG 3 cut(s) 64, 192, 197
BstF5I GGATG 3 cut(s) 359, 439, 614
BstFNI CGCG 1 cut(s) 442
BstKTI GATC 1 cut(s) 495
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 1 cut(s) 492
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 3 cut(s) 18, 58, 488
BstSFI CTRYAG 2 cut(s) 456, 641
BstUI CGCG 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BstZ17I GTATAC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 242
BtsCI GGATG 3 cut(s) 359, 439, 614
BtsIMutI CAGTG 1 cut(s) 471
Cac8I GCNNGC 1 cut(s) 440
CciI TCATGA 1 cut(s) 552
Csp6I GTAC 1 cut(s) 606
CviAII CATG 4 cut(s) 518, 553, 561, 637
CviJI RGCY 5 cut(s) 23, 63, 196, 242, 596
CviKI_1 RGCY 5 cut(s) 23, 63, 196, 242, 596
CviQI GTAC 1 cut(s) 606
DdeI CTNAG 3 cut(s) 64, 192, 197
DpnI GATC 1 cut(s) 494
DpnII GATC 1 cut(s) 492
Eam1104I CTCTTC 2 cut(s) 119, 168
EarI CTCTTC 2 cut(s) 119, 168
Eco130I CCWWGG 1 cut(s) 237
Eco72I CACGTG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 4 cut(s) 521, 556, 564, 640
FaiI YATR 8 cut(s) 139, 147, 519, 554, 562, 621, 638, 643
FatI CATG 4 cut(s) 517, 552, 560, 636
FblI GTMKAC 1 cut(s) 138
FokI GGATG 3 cut(s) 346, 446, 601
FspBI CTAG 2 cut(s) 24, 603
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 1 cut(s) 242
HapII CCGG 2 cut(s) 20, 489
Hin1II CATG 4 cut(s) 521, 556, 564, 640
HinfI GANTC 2 cut(s) 332, 588
HpaII CCGG 2 cut(s) 20, 489
HphI GGTGA 3 cut(s) 149, 158, 166
Hpy166II GTNNAC 2 cut(s) 139, 373
Hpy188I TCNGA 2 cut(s) 200, 295
Hpy188III TCNNGA 1 cut(s) 553
Hpy8I GTNNAC 2 cut(s) 139, 373
HpyCH4III ACNGT 3 cut(s) 184, 368, 475
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 7 cut(s) 15, 42, 383, 466, 498, 521, 544
HpyF3I CTNAG 3 cut(s) 64, 192, 197
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 4 cut(s) 521, 556, 564, 640
Kzo9I GATC 1 cut(s) 492
LpnPI CCDG 7 cut(s) 33, 45, 72, 236, 429, 468, 502
LweI GCATC 2 cut(s) 553, 575
MaeI CTAG 2 cut(s) 24, 603
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 1 cut(s) 448
MalI GATC 1 cut(s) 494
MboI GATC 1 cut(s) 492
MboII GAAGA 3 cut(s) 106, 155, 506
MflI RGATCY 1 cut(s) 492
MluCI AATT 2 cut(s) 131, 508
MluI ACGCGT 1 cut(s) 440
MlyI GAGTC 2 cut(s) 341, 597
MmeI TCCRAC 1 cut(s) 408
Mph1103I ATGCAT 1 cut(s) 523
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 443
MspI CCGG 2 cut(s) 20, 489
MspR9I CCNGG 3 cut(s) 20, 60, 490
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 442
NciI CCSGG 2 cut(s) 20, 490
NdeII GATC 1 cut(s) 492
NlaIII CATG 4 cut(s) 521, 556, 564, 640
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 1 cut(s) 523
OliI CACNNNNGTG 1 cut(s) 443
PagI TCATGA 1 cut(s) 552
PfoI TCCNGGA 1 cut(s) 488
PleI GAGTC 2 cut(s) 340, 596
PmaCI CACGTG 1 cut(s) 422
PmlI CACGTG 1 cut(s) 422
PpsI GAGTC 2 cut(s) 340, 596
Ppu21I YACGTR 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 58
PspCI CACGTG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 1 cut(s) 607
RsaNI GTAC 1 cut(s) 606
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 1 cut(s) 507
Sau3AI GATC 1 cut(s) 492
ScaI AGTACT 1 cut(s) 607
SchI GAGTC 2 cut(s) 341, 597
ScrFI CCNGG 3 cut(s) 20, 60, 490
SetI ASST 5 cut(s) 48, 80, 198, 311, 424
SfaNI GCATC 2 cut(s) 553, 575
SfcI CTRYAG 2 cut(s) 456, 641
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
SpeI ACTAGT 1 cut(s) 602
Sse9I AATT 2 cut(s) 131, 508
SsiI CCGC 2 cut(s) 120, 352
SspMI CTAG 2 cut(s) 24, 603
StyD4I CCNGG 3 cut(s) 18, 58, 488
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 3 cut(s) 184, 368, 475
TaiI ACGT 1 cut(s) 424
TaqII GACCGA 1 cut(s) 318
TasI AATT 2 cut(s) 131, 508
TatI WGTACW 1 cut(s) 605
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 478
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 506, 541, 569
TspRI CASTG 1 cut(s) 478
VspI ATTAAT 1 cut(s) 507
XapI RAATTY 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 2 cut(s) 24, 603
ZrmI AGTACT 1 cut(s) 607
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.