Rh1BG244600

Anthocyanin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005947
Physical Location & Seq
Reverse (-)
37130028 .. 37131443
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG244600.1

Sequence Viewer

Length: 1416 bp
ATGGAGGGTTCTTGCAACCCGGCTAGGGTTGTTGGGCAATGCAAGGTTTCTCCACCACCAGGCTCAGTTCCTACCACCTCTCTCCCTCTCACTTTCTTCGACATTGTTTTCCTCTTCTGCGGTCCGGTTGAATTTGTATACTTTTATGAGTTCCCTCACCCTCTTCACCACATCACCCAAACCATCCTCCCTAAGCTCAGACACTCTCTTTCCCTAACTCTCCAGCACTTCTTTCCCTTGGCCTCAAATCTCATCTGCCCTCCACCACCCTCCAAACCCTTTCTACATTACTCCGAGACTGACCGAACCTCACTCCTATTGACCATTGCCGAGTCCTCAAGCAACTTCAACCGCCTCACATCCTACCGTGTAAACAATGTTGCACAATCCCACTTCCTTGTTCCACCATTGCCACCAGCACGTGTGTTGGAGGATGGCACGCGTGTGGTCACTCCTGTAGCATTGCAACTCACTGTGTTCCCCAACTCCGGGATCTGCATTGGCATTAATTTTCTTCATGCATTGACTGATGGGAGTTCTTTGCATCATTTCATGAAGTCATGGGCATCTGTTTGTTTATCACAAGGAGTCAAGGCTTTGACTAGTACTCCCCCATCCCATAATAGAGGTTTGATTAAAGACCCATGCGGCCTTGAGAACAAGTTCTTAGCTGTATGGAGAAGTTGGACGCCTATCCCATGGGAGCTTCATATGAACCCATTCCATCCCTCCCTAACTGAAAACGTCCGAACCACATTCGTGTTGAGTAGACCAAAAATCGACAGACTTAAACAGTGGGTGTCTAGCTTATTCAGTGCTGTTCATGGTTCTAAGCCACCCCATATGTCATCATTTGTAGTTATATGCGCTTTGACATGGGTTTGTTTAGTCAAAGCAGAGGAGATCAATGATGATGAAATGCAATGCTACTTCAATTACTCGGCTGACTGCCGAAACCGGCTTGAGTATCCATTACCTAGTTCATATTTTGGGAACTGTTTATCAATACGTTCTACTCGAGTGAAGAAGAGTGAGCTAGTTAAGGAAAATGGACTCATTGTGGCAGTGGATGCTATAGGAAAAAATGTGAAAGATTTGGAGAGTGGGGTTTTGAGAGGAGCTGAGGAGTGGACTTCAGATTGGGACAAGGGTACTAATAGTCCTCCAATGCATTTAACCTTGCTTGCTGGCTCACCAAGACTTGATTTTTATAATGACATTGATTTTGGGTGGGGGAGACCCAAAAAGAGTGAGGTTATAAACATTGATTTTGATTTTCCGAAGTTTATTTACCTCAGTAATAGTAGAGAAGAGGAAGGTGGGTTTGAGATTGTCTTGGCATTTGAAAAGGAAAAAATGAAGTCCTTCAATTCCATCTTTGAACAAGCTTTGAAGCTCCCGGAATCGCATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0016740 GO:0016746 GO:0016747 GO:0033809
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

471

Amino Acids

52.98

Weight (kDa)

6.98

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 23 - 462 4.2e-45 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1212, 1259, 1414
AccI GTMKAC 2 cut(s) 138, 769
AccII CGCG 1 cut(s) 442
AciI CCGC 3 cut(s) 120, 352, 648
AclWI GGATC 1 cut(s) 500
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 1119
AcvI CACGTG 1 cut(s) 422
AcyI GRCGYC 1 cut(s) 689
AfaI GTAC 2 cut(s) 607, 1153
AfiI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
AflIII ACRYGT 2 cut(s) 421, 440
AgsI TTSAA 7 cut(s) 131, 349, 934, 1346, 1369, 1382, 1393
AhlI ACTAGT 1 cut(s) 602
AjnI CCWGG 1 cut(s) 58
AleI CACNNNNGTG 2 cut(s) 443, 758
AluBI AGCT 8 cut(s) 196, 671, 706, 807, 1036, 1121, 1388, 1396
AluI AGCT 8 cut(s) 196, 671, 706, 807, 1036, 1121, 1388, 1396
Alw26I GTCTC 2 cut(s) 290, 1231
AlwI GGATC 1 cut(s) 500
Ama87I CYCGRG 1 cut(s) 1017
AoxI GGCC 2 cut(s) 240, 649
ApoI RAATTY 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 1208, 1240
AseI ATTAAT 1 cut(s) 507
Asp700I GAANNNNTTC 3 cut(s) 662, 719, 1364
AspLEI GCGC 1 cut(s) 869
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 3 cut(s) 20, 490, 1400
AsuHPI GGTGA 4 cut(s) 149, 158, 166, 1185
AvaI CYCGRG 1 cut(s) 1017
AvaII GGWCC 1 cut(s) 122
BarI GAAGNNNNNNTAC 2 cut(s) 1274, 1306
BbrPI CACGTG 1 cut(s) 422
BbvCI CCTCAGC 1 cut(s) 1122
BccI CCATC 6 cut(s) 191, 428, 524, 622, 732, 1382
BciT130I CCWGG 1 cut(s) 60
BciVI GTATCC 1 cut(s) 978
BcnI CCSGG 3 cut(s) 20, 490, 1400
BcoDI GTCTC 2 cut(s) 290, 1231
BcuI ACTAGT 1 cut(s) 602
BfaI CTAG 5 cut(s) 24, 603, 804, 978, 1037
BfmI CTRYAG 2 cut(s) 456, 1074
BfuI GTATCC 1 cut(s) 978
BisI GCNGC 1 cut(s) 649
BlsI GCNGC 1 cut(s) 650
BmcAI AGTACT 1 cut(s) 607
Bme1390I CCNGG 4 cut(s) 20, 60, 490, 1400
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 1017
BmgT120I GGNCC 1 cut(s) 122
BmrFI CCNGG 4 cut(s) 20, 60, 490, 1400
BmsI GCATC 3 cut(s) 553, 575, 1060
BpmI CTGGAG 1 cut(s) 206
Bpu10I CCTNAGC 2 cut(s) 192, 1122
BpuEI CTTGAG 3 cut(s) 322, 674, 983
BpuMI CCSGG 3 cut(s) 20, 490, 1400
BsaAI YACGTR 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 689
BsaI GGTCTC 1 cut(s) 1231
BsaJI CCNNGG 2 cut(s) 237, 698
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
Bse118I RCCGGY 1 cut(s) 957
Bse3DI GCAATG 5 cut(s) 44, 324, 407, 461, 929
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 237, 698
BseGI GGATG 6 cut(s) 183, 359, 439, 614, 724, 1075
BseLI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
BseMI GCAATG 5 cut(s) 44, 324, 407, 461, 929
BseMII CTCAG 4 cut(s) 78, 211, 1113, 1309
BseRI GAGGAG 3 cut(s) 914, 1131, 1139
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 2 cut(s) 242, 651
BsiHKCI CYCGRG 1 cut(s) 1017
BsiSI CCGG 5 cut(s) 20, 125, 489, 958, 1400
BslFI GGGAC 1 cut(s) 1157
BslI CCNNNNNNNGG 4 cut(s) 25, 59, 488, 489
BsmAI GTCTC 2 cut(s) 290, 1231
BsmFI GGGAC 1 cut(s) 1157
BsnI GGCC 2 cut(s) 242, 651
Bso31I GGTCTC 1 cut(s) 1231
BsoBI CYCGRG 1 cut(s) 1017
Bsp143I GATC 2 cut(s) 492, 903
Bsp19I CCATGG 1 cut(s) 698
BspACI CCGC 3 cut(s) 120, 352, 648
BspANI GGCC 2 cut(s) 242, 651
BspCNI CTCAG 4 cut(s) 77, 210, 1114, 1308
BspFNI CGCG 1 cut(s) 442
BspHI TCATGA 1 cut(s) 552
BspPI GGATC 1 cut(s) 500
BspTNI GGTCTC 1 cut(s) 1231
BsrDI GCAATG 5 cut(s) 44, 324, 407, 461, 929
BsrFI RCCGGY 1 cut(s) 957
BssAI RCCGGY 1 cut(s) 957
BssECI CCNNGG 2 cut(s) 237, 698
BssMI GATC 2 cut(s) 492, 903
BssNAI GTATAC 1 cut(s) 139
BssNI GRCGYC 1 cut(s) 689
BssT1I CCWWGG 2 cut(s) 237, 698
Bst1107I GTATAC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 4 cut(s) 368, 475, 795, 998
Bst6I CTCTTC 4 cut(s) 119, 168, 1022, 1305
BstACI GRCGYC 1 cut(s) 689
BstAPI GCANNNNNTGC 1 cut(s) 1070
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 3 cut(s) 440, 1185, 1189
BstDEI CTNAG 7 cut(s) 64, 192, 197, 667, 831, 1122, 1295
BstDSI CCRYGG 1 cut(s) 698
BstF5I GGATG 6 cut(s) 183, 359, 439, 614, 724, 1075
BstFNI CGCG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 869
BstKTI GATC 2 cut(s) 495, 906
BstMAI GTCTC 2 cut(s) 290, 1231
BstMBI GATC 2 cut(s) 492, 903
BstMWI GCNNNNNNNGC 1 cut(s) 1070
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 4 cut(s) 18, 58, 488, 1398
BstSFI CTRYAG 2 cut(s) 456, 1074
BstUI CGCG 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BstZ17I GTATAC 1 cut(s) 139
BsuI GTATCC 1 cut(s) 978
BsuRI GGCC 2 cut(s) 242, 651
BtgI CCRYGG 1 cut(s) 698
BtsCI GGATG 6 cut(s) 183, 359, 439, 614, 724, 1075
BtsI GCAGTG 1 cut(s) 1071
BtsIMutI CAGTG 4 cut(s) 471, 800, 820, 1071
Cac8I GCNNGC 3 cut(s) 440, 1185, 1189
CciI TCATGA 1 cut(s) 552
CfoI GCGC 1 cut(s) 869
Cfr10I RCCGGY 1 cut(s) 957
Cfr13I GGNCC 1 cut(s) 122
CpoI CGGWCCG 1 cut(s) 122
CseI GACGC 1 cut(s) 697
Csp6I GTAC 2 cut(s) 606, 1152
CspI CGGWCCG 1 cut(s) 122
CviAII CATG 7 cut(s) 518, 553, 561, 645, 699, 824, 876
CviQI GTAC 2 cut(s) 606, 1152
DdeI CTNAG 7 cut(s) 64, 192, 197, 667, 831, 1122, 1295
DpnI GATC 2 cut(s) 494, 905
DpnII GATC 2 cut(s) 492, 903
Eam1104I CTCTTC 4 cut(s) 119, 168, 1022, 1305
EarI CTCTTC 4 cut(s) 119, 168, 1022, 1305
Eco130I CCWWGG 2 cut(s) 237, 698
Eco31I GGTCTC 1 cut(s) 1231
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 1119
Eco72I CACGTG 1 cut(s) 422
Eco88I CYCGRG 1 cut(s) 1017
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 2 cut(s) 237, 698
EcoT22I ATGCAT 2 cut(s) 523, 1173
ErhI CCWWGG 2 cut(s) 237, 698
FaeI CATG 7 cut(s) 521, 556, 564, 648, 702, 827, 879
FaqI GGGAC 1 cut(s) 1157
FatI CATG 7 cut(s) 517, 552, 560, 644, 698, 823, 875
FauNDI CATATG 2 cut(s) 711, 843
FblI GTMKAC 2 cut(s) 138, 769
Fnu4HI GCNGC 1 cut(s) 649
FokI GGATG 6 cut(s) 170, 346, 446, 601, 711, 1082
Fsp4HI GCNGC 1 cut(s) 649
FspBI CTAG 5 cut(s) 24, 603, 804, 978, 1037
GlaI GCGC 1 cut(s) 868
GluI GCNGC 1 cut(s) 649
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 2 cut(s) 242, 651
HapII CCGG 5 cut(s) 20, 125, 489, 958, 1400
HgaI GACGC 1 cut(s) 697
HhaI GCGC 1 cut(s) 869
Hin1I GRCGYC 1 cut(s) 689
Hin1II CATG 7 cut(s) 521, 556, 564, 648, 702, 827, 879
Hin6I GCGC 1 cut(s) 867
HinP1I GCGC 1 cut(s) 867
HindIII AAGCTT 1 cut(s) 1386
HinfI GANTC 4 cut(s) 332, 588, 1053, 1403
HpaII CCGG 5 cut(s) 20, 125, 489, 958, 1400
HphI GGTGA 4 cut(s) 149, 158, 166, 1185
Hpy166II GTNNAC 4 cut(s) 139, 373, 770, 1131
Hpy188I TCNGA 5 cut(s) 200, 295, 749, 1138, 1281
Hpy188III TCNNGA 1 cut(s) 553
Hpy8I GTNNAC 4 cut(s) 139, 373, 770, 1131
HpyAV CCTTC 2 cut(s) 1310, 1375
HpyCH4III ACNGT 4 cut(s) 368, 475, 795, 998
HpyCH4IV ACGT 3 cut(s) 421, 744, 1009
HpyCH4V TGCA 9 cut(s) 15, 42, 383, 466, 498, 521, 544, 922, 1171
HpyF10VI GCNNNNNNNGC 1 cut(s) 1070
HpyF3I CTNAG 7 cut(s) 64, 192, 197, 667, 831, 1122, 1295
HpySE526I ACGT 3 cut(s) 421, 744, 1009
Hsp92I GRCGYC 1 cut(s) 689
Hsp92II CATG 7 cut(s) 521, 556, 564, 648, 702, 827, 879
HspAI GCGC 1 cut(s) 867
Kzo9I GATC 2 cut(s) 492, 903
LmnI GCTCC 3 cut(s) 703, 1118, 1401
LweI GCATC 3 cut(s) 553, 575, 1060
MaeI CTAG 5 cut(s) 24, 603, 804, 978, 1037
MaeII ACGT 3 cut(s) 421, 744, 1009
MaeIII GTNAC 1 cut(s) 448
MalI GATC 2 cut(s) 494, 905
MboI GATC 2 cut(s) 492, 903
MboII GAAGA 7 cut(s) 88, 106, 155, 506, 1036, 1039, 1322
MflI RGATCY 1 cut(s) 492
MluCI AATT 4 cut(s) 131, 508, 934, 1369
MluI ACGCGT 1 cut(s) 440
MlyI GAGTC 3 cut(s) 341, 597, 1047
MmeI TCCRAC 2 cut(s) 408, 665
Mph1103I ATGCAT 2 cut(s) 523, 1173
MroXI GAANNNNTTC 3 cut(s) 662, 719, 1364
MseI TTAA 5 cut(s) 507, 636, 789, 1041, 1175
MslI CAYNNNNRTG 2 cut(s) 443, 758
MspI CCGG 5 cut(s) 20, 125, 489, 958, 1400
MspR9I CCNGG 4 cut(s) 20, 60, 490, 1400
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 442
MwoI GCNNNNNNNGC 1 cut(s) 1070
NciI CCSGG 3 cut(s) 20, 490, 1400
NcoI CCATGG 1 cut(s) 698
NdeI CATATG 2 cut(s) 711, 843
NdeII GATC 2 cut(s) 492, 903
NlaIII CATG 7 cut(s) 521, 556, 564, 648, 702, 827, 879
NmeAIII GCCGAG 2 cut(s) 355, 920
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 2 cut(s) 523, 1173
OliI CACNNNNGTG 2 cut(s) 443, 758
PaeR7I CTCGAG 1 cut(s) 1017
PagI TCATGA 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 1015
PdmI GAANNNNTTC 3 cut(s) 662, 719, 1364
PfeI GAWTC 1 cut(s) 1403
PfoI TCCNGGA 2 cut(s) 488, 1398
PkrI GCNGC 1 cut(s) 650
PleI GAGTC 3 cut(s) 340, 596, 1047
PmaCI CACGTG 1 cut(s) 422
PmlI CACGTG 1 cut(s) 422
PpsI GAGTC 3 cut(s) 340, 596, 1047
Ppu21I YACGTR 1 cut(s) 422
PshBI ATTAAT 1 cut(s) 507
PsiI TTATAA 3 cut(s) 1212, 1259, 1414
Psp6I CCWGG 1 cut(s) 58
PspCI CACGTG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 58
PspPI GGNCC 1 cut(s) 122
PspXI VCTCGAGB 1 cut(s) 1017
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 2 cut(s) 607, 1153
RsaNI GTAC 2 cut(s) 606, 1152
RseI CAYNNNNRTG 2 cut(s) 443, 758
Rsr2I CGGWCCG 1 cut(s) 122
RsrII CGGWCCG 1 cut(s) 122
SaqAI TTAA 5 cut(s) 507, 636, 789, 1041, 1175
SatI GCNGC 1 cut(s) 649
Sau3AI GATC 2 cut(s) 492, 903
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 1 cut(s) 607
SchI GAGTC 3 cut(s) 341, 597, 1047
ScrFI CCNGG 4 cut(s) 20, 60, 490, 1400
SfaNI GCATC 3 cut(s) 553, 575, 1060
SfcI CTRYAG 2 cut(s) 456, 1074
Sfr274I CTCGAG 1 cut(s) 1017
SinI GGWCC 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 1017
SmiMI CAYNNNNRTG 2 cut(s) 443, 758
SmlI CTYRAG 4 cut(s) 337, 653, 962, 1017
SmoI CTYRAG 4 cut(s) 337, 653, 962, 1017
SpeI ACTAGT 1 cut(s) 602
Sse9I AATT 4 cut(s) 131, 508, 934, 1369
SsiI CCGC 3 cut(s) 120, 352, 648
SspMI CTAG 5 cut(s) 24, 603, 804, 978, 1037
StyD4I CCNGG 4 cut(s) 18, 58, 488, 1398
StyI CCWWGG 2 cut(s) 237, 698
TaaI ACNGT 4 cut(s) 368, 475, 795, 998
TaiI ACGT 3 cut(s) 424, 747, 1012
TaqI TCGA 3 cut(s) 99, 780, 1018
TaqII GACCGA 1 cut(s) 318
TasI AATT 4 cut(s) 131, 508, 934, 1369
TatI WGTACW 1 cut(s) 605
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 1 cut(s) 1403
Tru1I TTAA 5 cut(s) 507, 636, 789, 1041, 1175
Tru9I TTAA 5 cut(s) 507, 636, 789, 1041, 1175
TscAI CASTG 4 cut(s) 478, 800, 820, 1071
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 9 cut(s) 506, 541, 569, 698, 728, 812, 930, 972, 1373
TspRI CASTG 4 cut(s) 478, 800, 820, 1071
VpaK11BI GGWCC 1 cut(s) 122
VspI ATTAAT 1 cut(s) 507
XapI RAATTY 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 1017
XmiI GTMKAC 2 cut(s) 138, 769
XmnI GAANNNNTTC 3 cut(s) 662, 719, 1364
XspI CTAG 5 cut(s) 24, 603, 804, 978, 1037
ZrmI AGTACT 1 cut(s) 607
Zsp2I ATGCAT 2 cut(s) 523, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.