FvH4_7g11300

coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004414
Physical Location & Seq
Reverse (-)
10515008 .. 10519257
4250 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11300.t1

Sequence Viewer

Length: 1023 bp
ATGAGTGAGGAGTTGATATTTTCTGCAGAACACCCAAGGTATTCGATTGCTTACGAATCTTTAAATAAAAGGTTGTGGTTGTGGATATTTTCAATGGAAGCACAGAGCTTGAAAGAGGACAATCCTAAATTGCAGAGCTTGGAAGAAGACCCTAAATCAAAGGGCTTGGAAGAAGAAGATACCAAATCACAGGGCTTGAAAGAAGAAGGTTTTAAATCACAAGAAGACCTTAAATCACAGAGAGTGAAAGAAGAAGAGCATAAATCACAGAGATTGAAAGGACAGGAATGTAAATCGCACAGCACGGTAGAAGAGCTTAAGTTAAACAGCTTGGAAGAAGAAGAGCCTATACTGCAGAGCGTGAAAAAAGAAGAGCCTAAATCACAGAGCTTGGAAGAAGAAGAAGAAGACCCGAAATTGCATAGCTTGAAAGAAGGACAAGATAGCTTGGGACACCCTAGATTCAATGAAAATGCATTGCAATTCCTTGATTCAATGGATGGGTATTTAACCCTCTTGGATTCACTGTCATGGACACTCCGGCAGGGATGGTTGCAACTAGCGAGTGCGCGACATTCAATGGGTGGGTCGCGGGTGAGCAGTGCTGTGTTGGATATGAAGCCCCATTCGGCTGCTACTTATTTGCAAGTCAGCAAACAATCCAATCCAGAAGCAGGGTTAGGGGAAATTCATCAATTTACATTGCTGAAATGGGCCTCCTCTGATAATGGAAATGGGTCTCCGCGTGGAGATGATAGTCCGCAGCTAAGACAACGAAAGGACAAGGTTGGAGATTCAGCTCCAGTTACAGCTGAGGATGATTATGAACATCAACTTCAGAAAGAGCGGTTTAAATCACTCTCGGTGTTTGGCGCTTTAGTTTCCCCCAAGCTACGAGCGGCTCAGCTCTCATTCGAAACTGCTCTCGAAGCACTTGTAGAGATTGCTAATATGCGATCGTTGATGCTTTCCAATTTTCACGAAGTCAGAAAAGAAATGGAATCAGCAAATGGCAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

38.53

Weight (kDa)

5.17

Isoelectric Point (pI)

61.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vma22_CCDC115 PF21730 157 - 307 1.2e-09 Vma22/CCDC115
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 847, 899
AccII CGCG 3 cut(s) 571, 592, 745
AciI CCGC 5 cut(s) 592, 743, 761, 847, 899
AcsI RAATTY 1 cut(s) 687
AcuI CTGAAG 1 cut(s) 821
AfiI CCNNNNNNNGG 1 cut(s) 674
AflII CTTAAG 1 cut(s) 317
AgsI TTSAA 8 cut(s) 93, 112, 199, 277, 430, 466, 495, 579
Alw26I GTCTC 1 cut(s) 744
AoxI GGCC 1 cut(s) 714
ApeKI GCWGC 2 cut(s) 632, 763
ApoI RAATTY 1 cut(s) 687
AspLEI GCGC 2 cut(s) 571, 875
AspS9I GGNCC 1 cut(s) 714
AsuHPI GGTGA 1 cut(s) 607
AsuII TTCGAA 1 cut(s) 915
BarI GAAGNNNNNNTAC 2 cut(s) 333, 365
BbsI GAAGAC 3 cut(s) 153, 231, 414
BbvCI CCTCAGC 1 cut(s) 813
BbvI GCAGC 2 cut(s) 619, 775
BccI CCATC 2 cut(s) 494, 543
BcoDI GTCTC 1 cut(s) 744
BfaI CTAG 2 cut(s) 459, 560
BfmI CTRYAG 2 cut(s) 24, 353
BfoI RGCGCY 1 cut(s) 876
BfrI CTTAAG 1 cut(s) 317
BisI GCNGC 3 cut(s) 633, 764, 900
BlpI GCTNAGC 1 cut(s) 903
BlsI GCNGC 3 cut(s) 634, 765, 901
BmgT120I GGNCC 1 cut(s) 714
BmsI GCATC 1 cut(s) 954
BpiI GAAGAC 3 cut(s) 153, 231, 414
BpmI CTGGAG 1 cut(s) 786
Bpu10I CCTNAGC 1 cut(s) 813
Bpu1102I GCTNAGC 1 cut(s) 903
Bpu14I TTCGAA 1 cut(s) 915
BsaI GGTCTC 1 cut(s) 744
BsaJI CCNNGG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 674
Bse1I ACTGG 1 cut(s) 803
Bse3DI GCAATG 2 cut(s) 476, 701
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 3 cut(s) 505, 554, 823
BseLI CCNNNNNNNGG 1 cut(s) 674
BseMI GCAATG 2 cut(s) 476, 701
BseMII CTCAG 2 cut(s) 804, 917
BseNI ACTGG 1 cut(s) 803
BseRI GAGGAG 2 cut(s) 23, 709
BseXI GCAGC 2 cut(s) 619, 775
Bsh1236I CGCG 3 cut(s) 571, 592, 745
Bsh1285I CGRYCG 1 cut(s) 959
BshFI GGCC 1 cut(s) 716
BsiEI CGRYCG 1 cut(s) 959
BsiSI CCGG 1 cut(s) 541
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 1 cut(s) 674
BsmAI GTCTC 1 cut(s) 744
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 1 cut(s) 716
Bso31I GGTCTC 1 cut(s) 744
Bsp119I TTCGAA 1 cut(s) 915
Bsp143I GATC 1 cut(s) 956
Bsp1720I GCTNAGC 1 cut(s) 903
BspACI CCGC 5 cut(s) 592, 743, 761, 847, 899
BspANI GGCC 1 cut(s) 716
BspCNI CTCAG 2 cut(s) 805, 916
BspFNI CGCG 3 cut(s) 571, 592, 745
BspMAI CTGCAG 2 cut(s) 28, 357
BspQI GCTCTTC 4 cut(s) 249, 306, 336, 366
BspT104I TTCGAA 1 cut(s) 915
BspTI CTTAAG 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 744
BsrBI CCGCTC 2 cut(s) 847, 899
BsrDI GCAATG 2 cut(s) 476, 701
BsrI ACTGG 1 cut(s) 803
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 1 cut(s) 956
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 307, 528
Bst6I CTCTTC 4 cut(s) 249, 306, 336, 366
BstAFI CTTAAG 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 915
BstDEI CTNAG 3 cut(s) 767, 813, 903
BstF5I GGATG 3 cut(s) 505, 554, 823
BstFNI CGCG 3 cut(s) 571, 592, 745
BstH2I RGCGCY 1 cut(s) 876
BstHHI GCGC 2 cut(s) 571, 875
BstKTI GATC 1 cut(s) 959
BstMAI GTCTC 1 cut(s) 744
BstMBI GATC 1 cut(s) 956
BstMCI CGRYCG 1 cut(s) 959
BstMWI GCNNNNNNNGC 2 cut(s) 352, 929
BstSFI CTRYAG 2 cut(s) 24, 353
BstUI CGCG 3 cut(s) 571, 592, 745
BstV1I GCAGC 2 cut(s) 619, 775
BstV2I GAAGAC 3 cut(s) 153, 231, 414
BsuRI GGCC 1 cut(s) 716
BtsCI GGATG 3 cut(s) 505, 554, 823
BtsI GCAGTG 1 cut(s) 607
BtsIMutI CAGTG 2 cut(s) 524, 607
CfoI GCGC 2 cut(s) 571, 875
Cfr13I GGNCC 1 cut(s) 714
CviAII CATG 1 cut(s) 531
DdeI CTNAG 3 cut(s) 767, 813, 903
DpnI GATC 1 cut(s) 958
DpnII GATC 1 cut(s) 956
DraI TTTAAA 3 cut(s) 63, 214, 853
Eam1104I CTCTTC 4 cut(s) 249, 306, 336, 366
EarI CTCTTC 4 cut(s) 249, 306, 336, 366
Eco130I CCWWGG 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 744
Eco57I CTGAAG 1 cut(s) 821
EcoT14I CCWWGG 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 1 cut(s) 534
FaiI YATR 7 cut(s) 261, 350, 423, 532, 617, 825, 953
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 1 cut(s) 465
FatI CATG 1 cut(s) 530
FauI CCCGC 1 cut(s) 585
Fnu4HI GCNGC 3 cut(s) 633, 764, 900
FokI GGATG 3 cut(s) 512, 561, 830
Fsp4HI GCNGC 3 cut(s) 633, 764, 900
FspBI CTAG 2 cut(s) 459, 560
GlaI GCGC 2 cut(s) 570, 874
GluI GCNGC 3 cut(s) 633, 764, 900
GsuI CTGGAG 1 cut(s) 786
HaeII RGCGCY 1 cut(s) 876
HaeIII GGCC 1 cut(s) 716
HapII CCGG 1 cut(s) 541
HhaI GCGC 2 cut(s) 571, 875
Hin1II CATG 1 cut(s) 534
Hin6I GCGC 2 cut(s) 569, 873
HinP1I GCGC 2 cut(s) 569, 873
HinfI GANTC 6 cut(s) 56, 462, 491, 521, 794, 1001
HpaII CCGG 1 cut(s) 541
HphI GGTGA 1 cut(s) 607
Hpy188I TCNGA 3 cut(s) 724, 840, 989
Hpy188III TCNNGA 3 cut(s) 668, 926, 980
HpyAV CCTTC 2 cut(s) 200, 428
HpyCH4III ACNGT 2 cut(s) 307, 528
HpyCH4V TGCA 8 cut(s) 26, 133, 355, 421, 476, 481, 556, 646
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 929
HpyF3I CTNAG 3 cut(s) 767, 813, 903
Hsp92II CATG 1 cut(s) 534
HspAI GCGC 2 cut(s) 569, 873
Kzo9I GATC 1 cut(s) 956
LguI GCTCTTC 4 cut(s) 249, 306, 336, 366
LmnI GCTCC 1 cut(s) 805
LpnPI CCDG 7 cut(s) 176, 269, 530, 554, 660, 681, 816
Lsp1109I GCAGC 2 cut(s) 619, 775
LweI GCATC 1 cut(s) 954
MaeI CTAG 2 cut(s) 459, 560
MaeIII GTNAC 1 cut(s) 805
MalI GATC 1 cut(s) 958
MbiI CCGCTC 2 cut(s) 847, 899
MboI GATC 1 cut(s) 956
MluCI AATT 6 cut(s) 128, 416, 482, 687, 695, 973
MmeI TCCRAC 2 cut(s) 591, 769
MnlI CCTC 5 cut(s) 109, 524, 727, 730, 808
Mph1103I ATGCAT 1 cut(s) 478
MseI TTAA 7 cut(s) 62, 213, 231, 318, 323, 509, 852
MslI CAYNNNNRTG 1 cut(s) 529
MspA1I CMGCKG 1 cut(s) 812
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 1 cut(s) 541
MvnI CGCG 3 cut(s) 571, 592, 745
MwoI GCNNNNNNNGC 2 cut(s) 352, 929
NdeII GATC 1 cut(s) 956
NlaIII CATG 1 cut(s) 534
NsiI ATGCAT 1 cut(s) 478
NspV TTCGAA 1 cut(s) 915
PciSI GCTCTTC 4 cut(s) 249, 306, 336, 366
PfeI GAWTC 6 cut(s) 56, 462, 491, 521, 794, 1001
PkrI GCNGC 3 cut(s) 634, 765, 901
Ple19I CGATCG 1 cut(s) 959
PspPI GGNCC 1 cut(s) 714
PstI CTGCAG 2 cut(s) 28, 357
PvuI CGATCG 1 cut(s) 959
PvuII CAGCTG 1 cut(s) 812
RseI CAYNNNNRTG 1 cut(s) 529
SapI GCTCTTC 4 cut(s) 249, 306, 336, 366
SaqAI TTAA 7 cut(s) 62, 213, 231, 318, 323, 509, 852
SatI GCNGC 3 cut(s) 633, 764, 900
Sau3AI GATC 1 cut(s) 956
Sau96I GGNCC 1 cut(s) 714
SfaNI GCATC 1 cut(s) 954
SfcI CTRYAG 2 cut(s) 24, 353
SfuI TTCGAA 1 cut(s) 915
SmiMI CAYNNNNRTG 1 cut(s) 529
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 6 cut(s) 128, 416, 482, 687, 695, 973
SsiI CCGC 5 cut(s) 592, 743, 761, 847, 899
SspMI CTAG 2 cut(s) 459, 560
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 307, 528
TaqI TCGA 3 cut(s) 44, 915, 927
TasI AATT 6 cut(s) 128, 416, 482, 687, 695, 973
TauI GCSGC 1 cut(s) 902
TfiI GAWTC 6 cut(s) 56, 462, 491, 521, 794, 1001
Tru1I TTAA 7 cut(s) 62, 213, 231, 318, 323, 509, 852
Tru9I TTAA 7 cut(s) 62, 213, 231, 318, 323, 509, 852
TscAI CASTG 2 cut(s) 531, 607
TseI GCWGC 2 cut(s) 632, 763
TspDTI ATGAA 4 cut(s) 483, 632, 680, 840
TspRI CASTG 2 cut(s) 531, 607
Vha464I CTTAAG 1 cut(s) 317
XapI RAATTY 1 cut(s) 687
XspI CTAG 2 cut(s) 459, 560
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.