Rorug01G0204000

coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004414
Physical Location & Seq
Reverse (-)
28451916 .. 28454801
2886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0204000.1

Sequence Viewer

Length: 1191 bp
ATGGAACCACCCTCTTCAGACTGTAGAGGTGCAGAAGCAGTACTAAATCTCCAACCCAGCTCGTCAATTCCTATTACATATCACCCTCTCTTTGGTCCTCACAATGATCTGATCCTCCTTGAACTTGATGAGAAACTCCTCCCTGATATCCTTCACCAAAGAGTGACTGTTAGAGGACAGCCTGATGAAGATGCAGTCATCTGCACGGAATCAAAGACTTACGCAATCAAGTCTGTTGGAACTTCGAATTCTGTTTTCCTCATACCCCCTTCTTGTCAATTTAATTCCTTTGAAGAACCAAAATGTTTTAATGAGAATTATCATGACCGGCAATCTGCTGCATCTGTCCTTAAGATTGCACCTGGTACCATGGAGCTTGTTGAAATTGCCCCAAGACTTGACAAGCTCAGGTTGCTACTTTCTGAGAATCCTTACAAAACTGAGGACACTGAAATGGAAGAACTGGAAGGCATGGAAAGAGAGAATGTAGGACTTTATAGATGGGAAGATCTTATTGAGAAGGTTCAAGCAAGTAACGAGGAGTTAAGGAATGCGTTACAGGCTCTTTCAGCTGTGGAGATTGATGGGTACTGGAGAATTGTGGATGAAAGGTACATGGATACGATGCTAAGGATACTTTTGCACAATGGAGTGTTGAATGACTGGTCATTTGCCTCACTTAATCAAGATGAGGTTGTTAATGTGCTGGTATCAGATGGCTTTCCTCACAAACTTGCAAATCATTGCCTGCATGCCTTTGGTAGTAAGGTGGATAAAGGTGTGGGCACAAGTAATACATGGAAGTTGGATGAGAGGAAAGTGTGTGTGCACTTTGCAATAGAAATCTTGAGAGACGGGAAGAGGAAAATGGAGAGTTTCATGGAGGAGTGGATGCGAAAAATTCCTGAAGGGATGCAAGCAAGTTTTGACATGTTGGAAGGTGAAGTTTTGACGGAGAGGATTGGCATTGAGACATGGATTCGAGCCTTCCGTGTTTCATCACTACCTGGCAATCCTGCAGAGCGTTTCTCCATCCTGTTTAAAGAGCGTCCGAAATGGGAGTTGAAGGATCTACAGCCCTTCATCAGGGACTTGAATGTGCCCGGTCTTTCTGCAGAAGGTTTGCTTTTAAAGTACACGAGAAGATTACAACCAACTATGGACACAGAACCAGTTTTCAGCTCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

396

Amino Acids

45.28

Weight (kDa)

5.02

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dcc1 PF09724 38 - 362 9.1e-93 Sister chromatid cohesion protein Dcc1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AclWI GGATC 2 cut(s) 106, 1077
AcsI RAATTY 2 cut(s) 247, 900
AcuI CTGAAG 1 cut(s) 927
AfaI GTAC 5 cut(s) 42, 367, 590, 614, 1136
AfiI CCNNNNNNNGG 2 cut(s) 92, 1086
AflII CTTAAG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 930
AgsI TTSAA 7 cut(s) 122, 293, 383, 527, 658, 1066, 1096
AjnI CCWGG 2 cut(s) 361, 1006
AluBI AGCT 5 cut(s) 60, 376, 406, 572, 1182
AluI AGCT 5 cut(s) 60, 376, 406, 572, 1182
Alw21I GWGCWC 1 cut(s) 831
Alw26I GTCTC 2 cut(s) 846, 965
Alw44I GTGCAC 1 cut(s) 827
AlwI GGATC 2 cut(s) 106, 1077
ApaLI GTGCAC 1 cut(s) 827
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 247, 900
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
Asp718I GGTACC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 95
AsuC2I CCSGG 1 cut(s) 1104
AsuHPI GGTGA 3 cut(s) 74, 146, 953
AsuII TTCGAA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 3 cut(s) 788, 831, 1104
BanI GGYRCC 1 cut(s) 365
BauI CACGAG 1 cut(s) 1138
Bbv12I GWGCWC 1 cut(s) 831
BbvI GCAGC 1 cut(s) 325
BccI CCATC 4 cut(s) 495, 578, 710, 1040
BciT130I CCWGG 2 cut(s) 363, 1008
BciVI GTATCC 2 cut(s) 613, 627
BcnI CCSGG 1 cut(s) 1104
BcoDI GTCTC 2 cut(s) 846, 965
BfmI CTRYAG 4 cut(s) 22, 1017, 1073, 1113
BfrI CTTAAG 1 cut(s) 350
BfuI GTATCC 2 cut(s) 613, 627
BglII AGATCT 1 cut(s) 508
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 3 cut(s) 363, 1008, 1104
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 6, 367
BmrFI CCNGG 3 cut(s) 363, 1008, 1104
BmsI GCATC 5 cut(s) 181, 350, 615, 882, 903
BplI GAGNNNNNCTC 2 cut(s) 1013, 1045
BpmI CTGGAG 1 cut(s) 613
Bpu10I CCTNAGC 2 cut(s) 407, 629
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 2 cut(s) 868, 1168
BpuMI CCSGG 1 cut(s) 1104
BsaJI CCNNGG 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 1086
Bse118I RCCGGY 1 cut(s) 327
Bse1I ACTGG 4 cut(s) 468, 596, 668, 1172
Bse3DI GCAATG 1 cut(s) 742
BseBI CCWGG 2 cut(s) 363, 1008
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 5 cut(s) 610, 814, 897, 918, 1032
BseLI CCNNNNNNNGG 2 cut(s) 92, 1086
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 3 cut(s) 414, 421, 432
BseNI ACTGG 4 cut(s) 468, 596, 668, 1172
BseRI GAGGAG 3 cut(s) 128, 554, 899
BseSI GKGCMC 3 cut(s) 788, 831, 1104
BseXI GCAGC 1 cut(s) 325
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 2 cut(s) 51, 187
BshNI GGYRCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 831
BsiSI CCGG 2 cut(s) 328, 1104
BslFI GGGAC 1 cut(s) 1103
BslI CCNNNNNNNGG 2 cut(s) 92, 1086
BsmAI GTCTC 2 cut(s) 846, 965
BsmBI CGTCTC 1 cut(s) 846
BsmFI GGGAC 1 cut(s) 1103
BsmI GAATGC 1 cut(s) 556
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 3 cut(s) 788, 831, 1104
Bsp143I GATC 4 cut(s) 106, 111, 508, 1069
Bsp19I CCATGG 1 cut(s) 369
BspCNI CTCAG 3 cut(s) 415, 420, 433
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 6, 367
BspMAI CTGCAG 2 cut(s) 1021, 1117
BspPI GGATC 2 cut(s) 106, 1077
BspT104I TTCGAA 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 365
BspTI CTTAAG 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 742
BsrFI RCCGGY 1 cut(s) 327
BsrI ACTGG 4 cut(s) 468, 596, 668, 1172
BssAI RCCGGY 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 4 cut(s) 106, 111, 508, 1069
BssSI CACGAG 1 cut(s) 1138
BssT1I CCWWGG 1 cut(s) 369
Bst2BI CACGAG 1 cut(s) 1138
Bst2UI CCWGG 2 cut(s) 363, 1008
Bst4CI ACNGT 2 cut(s) 23, 169
Bst6I CTCTTC 2 cut(s) 19, 854
BstAFI CTTAAG 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 749, 753, 918
BstDEI CTNAG 4 cut(s) 407, 423, 441, 629
BstDSI CCRYGG 1 cut(s) 369
BstENI CCTNNNNNAGG 1 cut(s) 1084
BstF5I GGATG 5 cut(s) 610, 814, 897, 918, 1032
BstKTI GATC 4 cut(s) 109, 114, 511, 1072
BstMAI GTCTC 2 cut(s) 846, 965
BstMBI GATC 4 cut(s) 106, 111, 508, 1069
BstMWI GCNNNNNNNGC 3 cut(s) 412, 560, 569
BstNI CCWGG 2 cut(s) 363, 1008
BstNSI RCATGY 2 cut(s) 755, 934
BstSCI CCNGG 3 cut(s) 361, 1006, 1102
BstSFI CTRYAG 4 cut(s) 22, 1017, 1073, 1113
BstSLI GKGCMC 3 cut(s) 788, 831, 1104
BstV1I GCAGC 1 cut(s) 325
BstX2I RGATCY 2 cut(s) 508, 1069
BstYI RGATCY 2 cut(s) 508, 1069
BsuI GTATCC 2 cut(s) 613, 627
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 5 cut(s) 610, 814, 897, 918, 1032
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 3 cut(s) 749, 753, 918
CciI TCATGA 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 95
CseI GACGC 1 cut(s) 1037
CsiI ACCWGGT 1 cut(s) 361
Csp6I GTAC 5 cut(s) 41, 366, 589, 613, 1135
CviAII CATG 9 cut(s) 323, 370, 472, 616, 752, 798, 880, 931, 975
CviQI GTAC 5 cut(s) 41, 366, 589, 613, 1135
DdeI CTNAG 4 cut(s) 407, 423, 441, 629
DpnI GATC 4 cut(s) 108, 113, 510, 1071
DpnII GATC 4 cut(s) 106, 111, 508, 1069
DraI TTTAAA 2 cut(s) 1042, 1131
Eam1104I CTCTTC 2 cut(s) 19, 854
EarI CTCTTC 2 cut(s) 19, 854
Eco130I CCWWGG 1 cut(s) 369
Eco32I GATATC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 927
EcoNI CCTNNNNNAGG 1 cut(s) 1084
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 361, 1006
EcoRV GATATC 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 846
FaeI CATG 9 cut(s) 326, 373, 475, 619, 755, 801, 883, 934, 978
FalI AAGNNNNNCTT 2 cut(s) 1110, 1142
FaqI GGGAC 1 cut(s) 1103
FatI CATG 9 cut(s) 322, 369, 471, 615, 751, 797, 879, 930, 974
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 5 cut(s) 617, 821, 904, 925, 1019
Fsp4HI GCNGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 339
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 613
HapII CCGG 2 cut(s) 328, 1104
HgaI GACGC 1 cut(s) 1037
Hin1II CATG 9 cut(s) 326, 373, 475, 619, 755, 801, 883, 934, 978
HinfI GANTC 3 cut(s) 209, 427, 979
HpaII CCGG 2 cut(s) 328, 1104
HphI GGTGA 3 cut(s) 74, 146, 953
Hpy166II GTNNAC 2 cut(s) 829, 1137
Hpy188I TCNGA 5 cut(s) 19, 111, 424, 715, 1053
Hpy188III TCNNGA 5 cut(s) 323, 686, 847, 905, 1185
Hpy8I GTNNAC 2 cut(s) 829, 1137
HpyCH4III ACNGT 2 cut(s) 23, 169
HpyF10VI GCNNNNNNNGC 3 cut(s) 412, 560, 569
HpyF3I CTNAG 4 cut(s) 407, 423, 441, 629
Hsp92II CATG 9 cut(s) 326, 373, 475, 619, 755, 801, 883, 934, 978
KpnI GGTACC 1 cut(s) 369
Kzo9I GATC 4 cut(s) 106, 111, 508, 1069
LmnI GCTCC 1 cut(s) 373
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 5 cut(s) 181, 350, 615, 882, 903
MabI ACCWGGT 1 cut(s) 361
MaeIII GTNAC 3 cut(s) 163, 533, 555
MalI GATC 4 cut(s) 108, 113, 510, 1071
MboI GATC 4 cut(s) 106, 111, 508, 1069
MboII GAAGA 7 cut(s) 6, 200, 305, 470, 518, 871, 1155
MflI RGATCY 2 cut(s) 508, 1069
MhlI GDGCHC 3 cut(s) 788, 831, 1104
MluCI AATT 8 cut(s) 66, 247, 278, 283, 316, 384, 597, 900
MmeI TCCRAC 4 cut(s) 76, 217, 786, 915
MseI TTAA 8 cut(s) 282, 309, 351, 545, 681, 699, 1041, 1130
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 572
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 2 cut(s) 328, 1104
MspR9I CCNGG 3 cut(s) 363, 1008, 1104
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 2 cut(s) 363, 1008
MwoI GCNNNNNNNGC 3 cut(s) 412, 560, 569
NciI CCSGG 1 cut(s) 1104
NcoI CCATGG 1 cut(s) 369
NdeII GATC 4 cut(s) 106, 111, 508, 1069
NlaIII CATG 9 cut(s) 326, 373, 475, 619, 755, 801, 883, 934, 978
NlaIV GGNNCC 2 cut(s) 6, 367
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 2 cut(s) 755, 934
NspV TTCGAA 1 cut(s) 245
PaeI GCATGC 1 cut(s) 755
PagI TCATGA 1 cut(s) 322
PciI ACATGT 1 cut(s) 930
PcsI WCGNNNNNNNCGW 1 cut(s) 988
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 3 cut(s) 209, 427, 979
PkrI GCNGC 1 cut(s) 340
PscI ACATGT 1 cut(s) 930
Psp6I CCWGG 2 cut(s) 361, 1006
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 2 cut(s) 361, 1006
PspN4I GGNNCC 2 cut(s) 6, 367
PspPI GGNCC 1 cut(s) 95
PstI CTGCAG 2 cut(s) 1021, 1117
PsuI RGATCY 2 cut(s) 508, 1069
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 5 cut(s) 42, 367, 590, 614, 1136
RsaNI GTAC 5 cut(s) 41, 366, 589, 613, 1135
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 8 cut(s) 282, 309, 351, 545, 681, 699, 1041, 1130
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 4 cut(s) 106, 111, 508, 1069
Sau96I GGNCC 1 cut(s) 95
ScaI AGTACT 1 cut(s) 42
ScrFI CCNGG 3 cut(s) 363, 1008, 1104
SduI GDGCHC 3 cut(s) 788, 831, 1104
SexAI ACCWGGT 1 cut(s) 361
SfaNI GCATC 5 cut(s) 181, 350, 615, 882, 903
SfcI CTRYAG 4 cut(s) 22, 1017, 1073, 1113
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 3 cut(s) 350, 847, 1183
SmoI CTYRAG 3 cut(s) 350, 847, 1183
SphI GCATGC 1 cut(s) 755
Sse9I AATT 8 cut(s) 66, 247, 278, 283, 316, 384, 597, 900
StyD4I CCNGG 3 cut(s) 361, 1006, 1102
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 23, 169
TaqI TCGA 2 cut(s) 245, 982
TasI AATT 8 cut(s) 66, 247, 278, 283, 316, 384, 597, 900
TatI WGTACW 2 cut(s) 40, 1134
TfiI GAWTC 3 cut(s) 209, 427, 979
Tru1I TTAA 8 cut(s) 282, 309, 351, 545, 681, 699, 1041, 1130
Tru9I TTAA 8 cut(s) 282, 309, 351, 545, 681, 699, 1041, 1130
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 5 cut(s) 201, 621, 868, 987, 1072
TspGWI ACGGA 3 cut(s) 221, 968, 980
TspRI CASTG 1 cut(s) 454
Vha464I CTTAAG 1 cut(s) 350
VneI GTGCAC 1 cut(s) 827
VpaK11BI GGWCC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 1084
XapI RAATTY 2 cut(s) 247, 900
XceI RCATGY 2 cut(s) 755, 934
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.