RchiOBHm_Chr1g0349471

coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004414
Physical Location & Seq
Reverse (-)
42572087 .. 42576475
4389 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57544

Sequence Viewer

Length: 981 bp
ATGGAAGCACAGAGCTTGAAAGAGGACAATCCTAAATTGCAGAGCTTGGAAGAAGACCCTAAACCAAAGGGCTTGGAAGAAGAAGATACTAAATTACAGAGCTTGAAAGAAGACCCTAAACCAAAGGGCTTGGAAGAAGAAGATACTAAATTACAGAGCTTGAAAGAAGACAGTTCTAAATCACTAGAAGATCCTAAATCACAGAGCTTGAAAGAAGAAGACCATAAATCACAGAGATTGAAAGAAGAGGAATGTAAGTCGCACAGCTTAGAAGAAGACCTTACGTTAAACAGCTTGGAAGAAGACCCTAAATCGCAGAGCTTGAAAGAAGAGAACCCTAAATTACAGAGCTTGGAAGAGGAAGAGCCTAAATCACAGAGCTTGAAAGAAGAAGGACTAGATAGCTTGGGAGACCCTAGATTCAATGAAAATGCATTGCAATTCCTAGATTCAATGGATGGGTATTTAACACTATTGGATTCATTGTCTTGGACACTTCGGCAGGGATGGCTGCAACTAGCAAGTGCGCGCCATTCAATGGGTGGGTCACGGGTGAGCAGTGCTGTGTTGGATATGAAGCCCCACTCGGCTGCTACTTTTTTGCAAGTCAGCAAACAATCCAATCCAGGAGCAGGGTTAGGGGAAATTCATCATTTTACATTGCTGAAATGGGCCTCCTCTGATAATGGAAATGGAGCTCCACATAGAGATGCGAGTCCGCAGCTAAGACAAAGAAAGGACAAGGATGGAGATTCAGCTCCAGTTACAGCTGAAGATGATTATCAACATCAACTTCAGAAGGAGCGGTTTAAATCACTTTCGGTGTTTGGCGCTTTGGTTTCCCCCAAGCTACGGGCGGCTCAGCTCTCATTCGAAACTGCACTTGAAGCGCTTGTAGAGATTGCTAACATGCGATCGTTGATGCTTTCCAATTTTCATGAAGTCAGAAAAGAAATGGAATCAGCAAATGGCAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

36.53

Weight (kDa)

4.97

Isoelectric Point (pI)

64.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vma22_CCDC115 PF21730 143 - 293 2.7e-09 Vma22/CCDC115
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 538
AccBSI CCGCTC 1 cut(s) 805
AccII CGCG 1 cut(s) 529
AciI CCGC 3 cut(s) 719, 805, 857
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 645
AcuI CTGAAG 2 cut(s) 779, 792
AfeI AGCGCT 1 cut(s) 891
AfiI CCNNNNNNNGG 3 cut(s) 538, 632, 852
AjnI CCWGG 1 cut(s) 625
Alw21I GWGCWC 1 cut(s) 700
Alw26I GTCTC 1 cut(s) 405
AlwI GGATC 1 cut(s) 185
Aor51HI AGCGCT 1 cut(s) 891
AoxI GGCC 1 cut(s) 672
ApeKI GCWGC 3 cut(s) 511, 590, 721
ApoI RAATTY 1 cut(s) 645
AspLEI GCGC 4 cut(s) 529, 531, 833, 892
AspS9I GGNCC 1 cut(s) 672
AsuHPI GGTGA 1 cut(s) 565
AsuII TTCGAA 1 cut(s) 873
BanII GRGCYC 1 cut(s) 700
BbsI GAAGAC 6 cut(s) 60, 117, 174, 225, 282, 309
Bbv12I GWGCWC 1 cut(s) 700
BbvI GCAGC 3 cut(s) 498, 577, 733
BccI CCATC 3 cut(s) 452, 501, 740
BciT130I CCWGG 1 cut(s) 627
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 5 cut(s) 185, 398, 417, 446, 518
BfoI RGCGCY 2 cut(s) 834, 893
BisI GCNGC 4 cut(s) 512, 591, 722, 858
BlpI GCTNAGC 1 cut(s) 861
BlsI GCNGC 4 cut(s) 513, 592, 723, 859
Bme1390I CCNGG 1 cut(s) 627
BmgT120I GGNCC 1 cut(s) 672
BmrFI CCNGG 1 cut(s) 627
BmsI GCATC 2 cut(s) 700, 912
BpiI GAAGAC 6 cut(s) 60, 117, 174, 225, 282, 309
BpmI CTGGAG 1 cut(s) 744
Bpu1102I GCTNAGC 1 cut(s) 861
Bpu14I TTCGAA 1 cut(s) 873
BsaBI GATNNNNATC 1 cut(s) 780
BsaI GGTCTC 1 cut(s) 405
Bsc4I CCNNNNNNNGG 3 cut(s) 538, 632, 852
Bse1I ACTGG 1 cut(s) 761
Bse3DI GCAATG 2 cut(s) 434, 659
Bse8I GATNNNNATC 1 cut(s) 780
BseBI CCWGG 1 cut(s) 627
BseGI GGATG 3 cut(s) 463, 512, 751
BseJI GATNNNNATC 1 cut(s) 780
BseLI CCNNNNNNNGG 3 cut(s) 538, 632, 852
BseMI GCAATG 2 cut(s) 434, 659
BseMII CTCAG 1 cut(s) 875
BseNI ACTGG 1 cut(s) 761
BsePI GCGCGC 1 cut(s) 527
BseRI GAGGAG 1 cut(s) 667
BseXI GCAGC 3 cut(s) 498, 577, 733
BsgI GTGCAG 1 cut(s) 864
Bsh1236I CGCG 1 cut(s) 529
Bsh1285I CGRYCG 1 cut(s) 917
BshFI GGCC 1 cut(s) 674
BsiEI CGRYCG 1 cut(s) 917
BsiHKAI GWGCWC 1 cut(s) 700
BslI CCNNNNNNNGG 3 cut(s) 538, 632, 852
BsmAI GTCTC 1 cut(s) 405
BsnI GGCC 1 cut(s) 674
Bso31I GGTCTC 1 cut(s) 405
Bsp119I TTCGAA 1 cut(s) 873
Bsp1286I GDGCHC 1 cut(s) 700
Bsp143I GATC 2 cut(s) 190, 914
Bsp1720I GCTNAGC 1 cut(s) 861
BspACI CCGC 3 cut(s) 719, 805, 857
BspANI GGCC 1 cut(s) 674
BspCNI CTCAG 1 cut(s) 874
BspFNI CGCG 1 cut(s) 529
BspHI TCATGA 1 cut(s) 937
BspPI GGATC 1 cut(s) 185
BspQI GCTCTTC 1 cut(s) 357
BspT104I TTCGAA 1 cut(s) 873
BspTNI GGTCTC 1 cut(s) 405
BsrBI CCGCTC 1 cut(s) 805
BsrDI GCAATG 2 cut(s) 434, 659
BsrI ACTGG 1 cut(s) 761
BssHII GCGCGC 1 cut(s) 527
BssMI GATC 2 cut(s) 190, 914
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 4 cut(s) 240, 324, 351, 357
BstBI TTCGAA 1 cut(s) 873
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 3 cut(s) 268, 725, 861
BstF5I GGATG 3 cut(s) 463, 512, 751
BstFNI CGCG 1 cut(s) 529
BstH2I RGCGCY 2 cut(s) 834, 893
BstHHI GCGC 4 cut(s) 529, 531, 833, 892
BstKTI GATC 2 cut(s) 193, 917
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 2 cut(s) 190, 914
BstMCI CGRYCG 1 cut(s) 917
BstMWI GCNNNNNNNGC 2 cut(s) 508, 887
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 1 cut(s) 625
BstUI CGCG 1 cut(s) 529
BstV1I GCAGC 3 cut(s) 498, 577, 733
BstV2I GAAGAC 6 cut(s) 60, 117, 174, 225, 282, 309
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 1 cut(s) 674
BtsCI GGATG 3 cut(s) 463, 512, 751
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 1 cut(s) 565
Cac8I GCNNGC 1 cut(s) 529
CciI TCATGA 1 cut(s) 937
CfoI GCGC 4 cut(s) 529, 531, 833, 892
Cfr13I GGNCC 1 cut(s) 672
CviAII CATG 2 cut(s) 910, 938
DdeI CTNAG 3 cut(s) 268, 725, 861
DpnI GATC 2 cut(s) 192, 916
DpnII GATC 2 cut(s) 190, 914
DraI TTTAAA 1 cut(s) 811
Eam1104I CTCTTC 4 cut(s) 240, 324, 351, 357
EarI CTCTTC 4 cut(s) 240, 324, 351, 357
Ecl136II GAGCTC 1 cut(s) 698
Eco24I GRGCYC 1 cut(s) 700
Eco31I GGTCTC 1 cut(s) 405
Eco47III AGCGCT 1 cut(s) 891
Eco53kI GAGCTC 1 cut(s) 698
Eco57I CTGAAG 2 cut(s) 779, 792
EcoICRI GAGCTC 1 cut(s) 698
EcoRII CCWGG 1 cut(s) 625
EcoT22I ATGCAT 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 700
FaeI CATG 2 cut(s) 913, 941
FaiI YATR 5 cut(s) 225, 575, 705, 911, 939
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FatI CATG 2 cut(s) 909, 937
Fnu4HI GCNGC 4 cut(s) 512, 591, 722, 858
FokI GGATG 3 cut(s) 470, 519, 758
FriOI GRGCYC 1 cut(s) 700
Fsp4HI GCNGC 4 cut(s) 512, 591, 722, 858
FspBI CTAG 5 cut(s) 185, 398, 417, 446, 518
GlaI GCGC 4 cut(s) 528, 530, 832, 891
GluI GCNGC 4 cut(s) 512, 591, 722, 858
GsuI CTGGAG 1 cut(s) 744
HaeII RGCGCY 2 cut(s) 834, 893
HaeIII GGCC 1 cut(s) 674
HhaI GCGC 4 cut(s) 529, 531, 833, 892
Hin1II CATG 2 cut(s) 913, 941
Hin6I GCGC 4 cut(s) 527, 529, 831, 890
HinP1I GCGC 4 cut(s) 527, 529, 831, 890
HinfI GANTC 6 cut(s) 420, 449, 479, 715, 752, 959
HphI GGTGA 1 cut(s) 565
Hpy188I TCNGA 3 cut(s) 682, 798, 947
Hpy188III TCNNGA 1 cut(s) 938
HpyAV CCTTC 2 cut(s) 386, 793
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 6 cut(s) 40, 434, 439, 514, 604, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 508, 887
HpyF3I CTNAG 3 cut(s) 268, 725, 861
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 2 cut(s) 913, 941
HspAI GCGC 4 cut(s) 527, 529, 831, 890
Kzo9I GATC 2 cut(s) 190, 914
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 5 cut(s) 629, 695, 703, 763, 802
LpnPI CCDG 5 cut(s) 488, 612, 618, 639, 774
Lsp1109I GCAGC 3 cut(s) 498, 577, 733
LweI GCATC 2 cut(s) 700, 912
MaeI CTAG 5 cut(s) 185, 398, 417, 446, 518
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 2 cut(s) 546, 763
MalI GATC 2 cut(s) 192, 916
MbiI CCGCTC 1 cut(s) 805
MboI GATC 2 cut(s) 190, 914
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 700
MluCI AATT 7 cut(s) 35, 92, 149, 341, 440, 645, 931
MlyI GAGTC 1 cut(s) 724
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 5 cut(s) 16, 241, 352, 685, 688
Mph1103I ATGCAT 1 cut(s) 436
MseI TTAA 3 cut(s) 287, 467, 810
MslI CAYNNNNRTG 1 cut(s) 708
MspA1I CMGCKG 1 cut(s) 770
MspR9I CCNGG 1 cut(s) 627
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 1 cut(s) 529
MwoI GCNNNNNNNGC 2 cut(s) 508, 887
NdeII GATC 2 cut(s) 190, 914
NlaIII CATG 2 cut(s) 913, 941
NmeAIII GCCGAG 1 cut(s) 566
NmuCI GTSAC 1 cut(s) 546
NsiI ATGCAT 1 cut(s) 436
NspI RCATGY 1 cut(s) 913
NspV TTCGAA 1 cut(s) 873
PagI TCATGA 1 cut(s) 937
PauI GCGCGC 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 357
PfeI GAWTC 5 cut(s) 420, 449, 479, 752, 959
PflMI CCANNNNNTGG 1 cut(s) 538
PfoI TCCNGGA 1 cut(s) 625
PkrI GCNGC 4 cut(s) 513, 592, 723, 859
Ple19I CGATCG 1 cut(s) 917
PleI GAGTC 1 cut(s) 723
PpsI GAGTC 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspPI GGNCC 1 cut(s) 672
PsuI RGATCY 1 cut(s) 190
PteI GCGCGC 1 cut(s) 527
PvuI CGATCG 1 cut(s) 917
PvuII CAGCTG 1 cut(s) 770
RseI CAYNNNNRTG 1 cut(s) 708
SacI GAGCTC 1 cut(s) 700
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 3 cut(s) 287, 467, 810
SatI GCNGC 4 cut(s) 512, 591, 722, 858
Sau3AI GATC 2 cut(s) 190, 914
Sau96I GGNCC 1 cut(s) 672
SchI GAGTC 1 cut(s) 724
ScrFI CCNGG 1 cut(s) 627
SduI GDGCHC 1 cut(s) 700
SfaNI GCATC 2 cut(s) 700, 912
SfuI TTCGAA 1 cut(s) 873
SmiMI CAYNNNNRTG 1 cut(s) 708
Sse9I AATT 7 cut(s) 35, 92, 149, 341, 440, 645, 931
SsiI CCGC 3 cut(s) 719, 805, 857
SspMI CTAG 5 cut(s) 185, 398, 417, 446, 518
SstI GAGCTC 1 cut(s) 700
StyD4I CCNGG 1 cut(s) 625
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 873
TasI AATT 7 cut(s) 35, 92, 149, 341, 440, 645, 931
TauI GCSGC 1 cut(s) 860
TfiI GAWTC 5 cut(s) 420, 449, 479, 752, 959
Tru1I TTAA 3 cut(s) 287, 467, 810
Tru9I TTAA 3 cut(s) 287, 467, 810
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 1 cut(s) 546
TseI GCWGC 3 cut(s) 511, 590, 721
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 6 cut(s) 441, 471, 590, 638, 926, 954
TspRI CASTG 1 cut(s) 565
Van91I CCANNNNNTGG 1 cut(s) 538
XapI RAATTY 1 cut(s) 645
XceI RCATGY 1 cut(s) 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XspI CTAG 5 cut(s) 185, 398, 417, 446, 518
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.