Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004414

Physical Location & Seq

Genomic Coordinates Reverse (-)

36468186 .. 36475195

Gene Structure 7010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAAGCACAGAGCTTGAAAGAGGCCAATCGTAAATTGCAGAGCTTGGAAGTAGACCCTAAATCAAAGGGCTTGGAAGAAGAAGATACTAAATTACAGAGCTTGAAAGAAGACGGTTCTAAATCACTAGAAGACCCTAAATCACAGAGCTTGAAAGAAGAAGACCATAAATCACAGCGATTGAAAGAAGAGGAATGTAAGTCGCACAGCTTGGAAGAAGACCTGAAGTTAAACAGCTCGGAAGAAGACCCTAAATCGCAGAGCTTGAAAGAAGAAGACCCTAAATTACAGAGCTTGGAAGAGGAAGAGCCTAAATCACAGAGCTTGAAAGAAGAAGGACGAGATAGCTTGGGAGACCCTAAATTCAATGAAAATGCATTGCAATTCCTGGATTCAATGGATGGGTATTTAACCCTAATGGATTCATTGTCTTGGACACTTCGGCAGGGATGGCTGCAACTAGCGAGTGCGTGCCACTCAATGGGTGGGTCGCGGGTGAGCAGTGCGGTGTTGGATATGAAGCCCCACTCAGCTGCTACTTTTTTGCAAGTCAGCAAACAATCCAATCCAGGAGTAGGGTTAGGGGAAATTCATCATTTTACATTGCTGAAATGGGCCTCATCGGATAATGGAAATGGAGCTCCACATAGAGATGTGAGTCCACAGCTAAGACAAAGAAAGGACGAGGATGGAGATCCAGCCCCTGTTACAGCTGAAGATGACCATCATCAGCAACTTCAGAAGGAGCGGTTTAAATCACTTTCGGTGTTTGGCGCTTTGGTTTCCCCAAGCTACGGGCGGCTCAGCTCTCATTCGAAACTGCGCTGGAAGCACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

279

Amino Acids

31.3

Weight (kDa)

5.37

Isoelectric Point (pI)

71.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20770 AT1G20770
fragaria_vesca	FvH4_7g11300 FvH4_7g11300 FvH4_7g11300
malus_domestica	MD02G1098700.v1.1 MD07G1117600.v1.1
prunus_persica	Prupe.2G140800_v2.0.a1
pyrus_communis	pycom07g10720
rosa_chinensis	RchiOBHm_Chr1g0349471 RchiOBHm_Chr7g0215611
rosa_laevigata	RLG00000002643 RLG00000028546
rosa_multiflora	Rmu_co7982600.1_g000001 Rmu_sc0000898.1_g000041 Rmu_sc0000898.1_g000084 Rmu_sc0002495.1_g000011 Rmu_sc0007602.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244050 Rroxscaffold_4G00305520
rosa_rugosa	Rorug01G0204000 Rorug01G0204100 Rorug07G0155100
rosa_samantha	Rh1AG221400 Rh1BG187500 Rh1CG206300 Rh1DG216800 Rh7AG291400 Rh7CG311500 Rh7DG295200
rosa_wichuraiana	Rw1G018820 Rw7G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	748
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	493
AciI	CCGC	4 cut(s)	493, 506, 748, 799
AclWI	GGATC	1 cut(s)	689
AcsI	RAATTY	2 cut(s)	362, 588
AcuI	CTGAAG	3 cut(s)	245, 722, 735
AfiI	CCNNNNNNNGG	3 cut(s)	481, 575, 794
AgsI	TTSAA	8 cut(s)	19, 106, 154, 184, 268, 328, 367, 396
AjnI	CCWGG	2 cut(s)	387, 568
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	689
AlwNI	CAGNNNCTG	1 cut(s)	704
AoxI	GGCC	2 cut(s)	24, 615
ApeKI	GCWGC	2 cut(s)	454, 533
ApoI	RAATTY	2 cut(s)	362, 588
AspLEI	GCGC	2 cut(s)	776, 825
AspS9I	GGNCC	1 cut(s)	615
AsuHPI	GGTGA	1 cut(s)	508
AsuII	TTCGAA	1 cut(s)	815
BanII	GRGCYC	1 cut(s)	643
BbsI	GAAGAC	6 cut(s)	117, 138, 168, 225, 252, 282
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	2 cut(s)	441, 520
BccI	CCATC	4 cut(s)	395, 444, 683, 732
BciT130I	CCWGG	2 cut(s)	389, 570
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	128, 461
BfoI	RGCGCY	1 cut(s)	777
BisI	GCNGC	3 cut(s)	455, 534, 800
BlpI	GCTNAGC	1 cut(s)	803
BlsI	GCNGC	3 cut(s)	456, 535, 801
Bme1390I	CCNGG	2 cut(s)	389, 570
BmgT120I	GGNCC	1 cut(s)	615
BmrFI	CCNGG	2 cut(s)	389, 570
BpiI	GAAGAC	6 cut(s)	117, 138, 168, 225, 252, 282
Bpu1102I	GCTNAGC	1 cut(s)	803
Bpu14I	TTCGAA	1 cut(s)	815
BsaBI	GATNNNNATC	2 cut(s)	693, 723
BsaI	GGTCTC	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	3 cut(s)	481, 575, 794
Bse3DI	GCAATG	2 cut(s)	377, 602
Bse8I	GATNNNNATC	2 cut(s)	693, 723
BseBI	CCWGG	2 cut(s)	389, 570
BseGI	GGATG	3 cut(s)	406, 455, 694
BseJI	GATNNNNATC	2 cut(s)	693, 723
BseLI	CCNNNNNNNGG	3 cut(s)	481, 575, 794
BseMI	GCAATG	2 cut(s)	377, 602
BseMII	CTCAG	2 cut(s)	543, 817
BseXI	GCAGC	2 cut(s)	441, 520
Bsh1236I	CGCG	1 cut(s)	493
BshFI	GGCC	2 cut(s)	26, 617
BsiHKAI	GWGCWC	1 cut(s)	643
BslI	CCNNNNNNNGG	3 cut(s)	481, 575, 794
BsmAI	GTCTC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	26, 617
Bso31I	GGTCTC	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	815
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	1 cut(s)	694
Bsp1720I	GCTNAGC	1 cut(s)	803
BspACI	CCGC	4 cut(s)	493, 506, 748, 799
BspANI	GGCC	2 cut(s)	26, 617
BspCNI	CTCAG	2 cut(s)	542, 816
BspFNI	CGCG	1 cut(s)	493
BspPI	GGATC	1 cut(s)	689
BspQI	GCTCTTC	1 cut(s)	300
BspT104I	TTCGAA	1 cut(s)	815
BspTNI	GGTCTC	1 cut(s)	348
BsrBI	CCGCTC	1 cut(s)	748
BsrDI	GCAATG	2 cut(s)	377, 602
BssMI	GATC	1 cut(s)	694
Bst2UI	CCWGG	2 cut(s)	389, 570
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	3 cut(s)	183, 294, 300
BstBI	TTCGAA	1 cut(s)	815
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	3 cut(s)	529, 668, 803
BstF5I	GGATG	3 cut(s)	406, 455, 694
BstFNI	CGCG	1 cut(s)	493
BstH2I	RGCGCY	1 cut(s)	777
BstHHI	GCGC	2 cut(s)	776, 825
BstKTI	GATC	1 cut(s)	697
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	694
BstMWI	GCNNNNNNNGC	2 cut(s)	451, 829
BstNI	CCWGG	2 cut(s)	389, 570
BstSCI	CCNGG	2 cut(s)	387, 568
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	2 cut(s)	441, 520
BstV2I	GAAGAC	6 cut(s)	117, 138, 168, 225, 252, 282
BstX2I	RGATCY	1 cut(s)	694
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	26, 617
BtsCI	GGATG	3 cut(s)	406, 455, 694
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	508
Cac8I	GCNNGC	1 cut(s)	472
CaiI	CAGNNNCTG	1 cut(s)	704
CfoI	GCGC	2 cut(s)	776, 825
Cfr13I	GGNCC	1 cut(s)	615
DdeI	CTNAG	3 cut(s)	529, 668, 803
DpnI	GATC	1 cut(s)	696
DpnII	GATC	1 cut(s)	694
DraI	TTTAAA	1 cut(s)	754
Eam1104I	CTCTTC	3 cut(s)	183, 294, 300
EarI	CTCTTC	3 cut(s)	183, 294, 300
Ecl136II	GAGCTC	1 cut(s)	641
Eco24I	GRGCYC	1 cut(s)	643
Eco31I	GGTCTC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	641
Eco57I	CTGAAG	3 cut(s)	245, 722, 735
EcoICRI	GAGCTC	1 cut(s)	641
EcoRII	CCWGG	2 cut(s)	387, 568
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	643
FaiI	YATR	3 cut(s)	168, 518, 648
FauI	CCCGC	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	455, 534, 800
FokI	GGATG	3 cut(s)	413, 462, 701
FriOI	GRGCYC	1 cut(s)	643
Fsp4HI	GCNGC	3 cut(s)	455, 534, 800
FspBI	CTAG	2 cut(s)	128, 461
GlaI	GCGC	2 cut(s)	775, 824
GluI	GCNGC	3 cut(s)	455, 534, 800
HaeII	RGCGCY	1 cut(s)	777
HaeIII	GGCC	2 cut(s)	26, 617
HhaI	GCGC	2 cut(s)	776, 825
Hin6I	GCGC	2 cut(s)	774, 823
HinP1I	GCGC	2 cut(s)	774, 823
HinfI	GANTC	3 cut(s)	392, 422, 658
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	2 cut(s)	55, 662
Hpy188I	TCNGA	3 cut(s)	241, 625, 741
Hpy8I	GTNNAC	2 cut(s)	55, 662
HpyAV	CCTTC	2 cut(s)	329, 736
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	5 cut(s)	40, 377, 382, 457, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	451, 829
HpyF3I	CTNAG	3 cut(s)	529, 668, 803
HspAI	GCGC	2 cut(s)	774, 823
Kzo9I	GATC	1 cut(s)	694
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	3 cut(s)	638, 646, 745
LpnPI	CCDG	9 cut(s)	236, 374, 401, 431, 555, 582, 711, 717, 811
Lsp1109I	GCAGC	2 cut(s)	441, 520
MaeI	CTAG	2 cut(s)	128, 461
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	1 cut(s)	696
MbiI	CCGCTC	1 cut(s)	748
MboI	GATC	1 cut(s)	694
MflI	RGATCY	1 cut(s)	694
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	6 cut(s)	35, 92, 284, 362, 383, 588
MlyI	GAGTC	1 cut(s)	667
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	5 cut(s)	16, 184, 295, 628, 679
Mph1103I	ATGCAT	1 cut(s)	379
MseI	TTAA	3 cut(s)	230, 410, 753
MslI	CAYNNNNRTG	1 cut(s)	651
MspA1I	CMGCKG	2 cut(s)	533, 713
MspR9I	CCNGG	2 cut(s)	389, 570
MvaI	CCWGG	2 cut(s)	389, 570
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	2 cut(s)	451, 829
NdeII	GATC	1 cut(s)	694
NsiI	ATGCAT	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	815
PciSI	GCTCTTC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	392, 422
PflMI	CCANNNNNTGG	1 cut(s)	481
PfoI	TCCNGGA	2 cut(s)	387, 568
PkrI	GCNGC	3 cut(s)	456, 535, 801
PleI	GAGTC	1 cut(s)	666
PpsI	GAGTC	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	643
Psp6I	CCWGG	2 cut(s)	387, 568
PspGI	CCWGG	2 cut(s)	387, 568
PspPI	GGNCC	1 cut(s)	615
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	694
PvuII	CAGCTG	2 cut(s)	533, 713
RseI	CAYNNNNRTG	1 cut(s)	651
SacI	GAGCTC	1 cut(s)	643
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	230, 410, 753
SatI	GCNGC	3 cut(s)	455, 534, 800
Sau3AI	GATC	1 cut(s)	694
Sau96I	GGNCC	1 cut(s)	615
SchI	GAGTC	1 cut(s)	667
ScrFI	CCNGG	2 cut(s)	389, 570
SduI	GDGCHC	1 cut(s)	643
SfuI	TTCGAA	1 cut(s)	815
SmiMI	CAYNNNNRTG	1 cut(s)	651
Sse9I	AATT	6 cut(s)	35, 92, 284, 362, 383, 588
SsiI	CCGC	4 cut(s)	493, 506, 748, 799
SspMI	CTAG	2 cut(s)	128, 461
SstI	GAGCTC	1 cut(s)	643
StyD4I	CCNGG	2 cut(s)	387, 568
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	815
TasI	AATT	6 cut(s)	35, 92, 284, 362, 383, 588
TauI	GCSGC	1 cut(s)	802
TfiI	GAWTC	2 cut(s)	392, 422
Tru1I	TTAA	3 cut(s)	230, 410, 753
Tru9I	TTAA	3 cut(s)	230, 410, 753
TscAI	CASTG	1 cut(s)	508
TseI	GCWGC	2 cut(s)	454, 533
TspDTI	ATGAA	4 cut(s)	384, 414, 533, 581
TspRI	CASTG	1 cut(s)	508
Van91I	CCANNNNNTGG	1 cut(s)	481
XapI	RAATTY	2 cut(s)	362, 588
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	2 cut(s)	128, 461
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.