Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004414

Physical Location & Seq

Genomic Coordinates Reverse (-)

12267739 .. 12269130

Gene Structure 1392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0155100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTGAGAAAACCCACCAGGCATACCCTGTAGCCCCGGCAAATGGTTACACAAGAAGTGATGGAGAGTCTTTAGTATCCGAAGATGAGCTCAAACGCAAGAAGAGGATCAAGTTGTTTACTTATATTGGCATCTTCATTGTGTTTCAAATCATAGTGATGACTGTATTTGGTCTCACTGTGATGAAAGTTAAGACCCCCAAGGCCAGGTTGGGTGAGATCAACATCCAAAGTCTCAACTCTGTCCCTGCAACACCTTCGTTCGATGCAGCTTTCACTGCACAAATCAGGATCAAGAACACAAATTGGGGTCCATATAAGTTCGATGCAGGTACTGCCACGTTTCAGTACCAAGGTGTGACTATTGGCCAAGTTGTTATTCCTAAGAGCAAGGCTGGAATGCGTTCAACCAAGAAGATCAGTGTCGAGGTGGGTGTGAATACTAATGTATTGCCAAGCAGTTCAACTCTTGGCAGTGAATTGAACAGTGGGGTGTTGACCCTTACTAGCCAGGTTCAATTGAAAGGAAAAGTCGAATTGATGCTCATAATGAAGAAAAACAAGTATGCTGCAATGGATTGCACCATAGCATTTGATTTGTCATCAAAGACGGTCAAAACTTTGGAATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.09

Weight (kDa)

9.76

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20770 AT1G20770
fragaria_vesca	FvH4_7g11300 FvH4_7g11300 FvH4_7g11300
malus_domestica	MD02G1098700.v1.1 MD07G1117600.v1.1
prunus_persica	Prupe.2G140800_v2.0.a1
pyrus_communis	pycom07g10720
rosa_chinensis	RchiOBHm_Chr1g0349471 RchiOBHm_Chr7g0215611
rosa_laevigata	RLG00000002643 RLG00000028546
rosa_multiflora	Rmu_co7982600.1_g000001 Rmu_sc0000898.1_g000041 Rmu_sc0000898.1_g000084 Rmu_sc0002495.1_g000011 Rmu_sc0007602.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244050 Rroxscaffold_4G00305520
rosa_rugosa	Rorug01G0204000 Rorug01G0204100 Rorug07G0155100
rosa_samantha	Rh1AG221400 Rh1BG187500 Rh1CG206300 Rh1DG216800 Rh7AG291400 Rh7CG311500 Rh7DG295200
rosa_wichuraiana	Rw1G018820 Rw7G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	320
AclWI	GGATC	2 cut(s)	116, 299
AcoI	YGGCCR	1 cut(s)	367
AfaI	GTAC	2 cut(s)	334, 350
AfiI	CCNNNNNNNGG	2 cut(s)	44, 207
AgsI	TTSAA	6 cut(s)	149, 408, 465, 484, 518, 523
AjnI	CCWGG	3 cut(s)	18, 206, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AluBI	AGCT	2 cut(s)	91, 272
AluI	AGCT	2 cut(s)	91, 272
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	2 cut(s)	179, 239
AlwI	GGATC	2 cut(s)	116, 299
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	204, 367
ApeKI	GCWGC	2 cut(s)	269, 569
Asp700I	GAANNNNTTC	1 cut(s)	403
AspS9I	GGNCC	1 cut(s)	311
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	311
BalI	TGGCCA	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	281, 556
BccI	CCATC	1 cut(s)	56
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	3 cut(s)	20, 208, 512
BciVI	GTATCC	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	179, 239
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	88
BisI	GCNGC	2 cut(s)	270, 570
BlsI	GCNGC	2 cut(s)	271, 571
Bme1390I	CCNGG	4 cut(s)	20, 38, 208, 512
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	4 cut(s)	20, 38, 208, 512
BmsI	GCATC	4 cut(s)	141, 256, 316, 531
BpuMI	CCSGG	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	179
BsaJI	CCNNGG	3 cut(s)	36, 201, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 207
Bse3DI	GCAATG	1 cut(s)	579
Bse8I	GATNNNNATC	1 cut(s)	224
BseBI	CCWGG	3 cut(s)	20, 208, 512
BseDI	CCNNGG	3 cut(s)	36, 201, 352
BseGI	GGATG	1 cut(s)	225
BseJI	GATNNNNATC	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	44, 207
BseMI	GCAATG	1 cut(s)	579
BseXI	GCAGC	2 cut(s)	281, 556
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	206, 369
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	44, 207
BsmAI	GTCTC	2 cut(s)	179, 239
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	2 cut(s)	405, 632
BsnI	GGCC	2 cut(s)	206, 369
Bso31I	GGTCTC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	4 cut(s)	108, 219, 291, 417
BspANI	GGCC	2 cut(s)	206, 369
BspLI	GGNNCC	1 cut(s)	312
BspMI	ACCTGC	1 cut(s)	320
BspPI	GGATC	2 cut(s)	116, 299
BspTNI	GGTCTC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	579
BssECI	CCNNGG	3 cut(s)	36, 201, 352
BssMI	GATC	4 cut(s)	108, 219, 291, 417
BssT1I	CCWWGG	2 cut(s)	201, 352
Bst2UI	CCWGG	3 cut(s)	20, 208, 512
Bst4CI	ACNGT	4 cut(s)	166, 181, 488, 613
Bst6I	CTCTTC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstDEI	CTNAG	2 cut(s)	6, 384
BstF5I	GGATG	1 cut(s)	225
BstKTI	GATC	4 cut(s)	111, 222, 294, 420
BstMAI	GTCTC	2 cut(s)	179, 239
BstMBI	GATC	4 cut(s)	108, 219, 291, 417
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 335
BstNI	CCWGG	3 cut(s)	20, 208, 512
BstSCI	CCNGG	4 cut(s)	18, 36, 206, 510
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	281, 556
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	206, 369
BtsCI	GGATG	1 cut(s)	225
BtsI	GCAGTG	2 cut(s)	276, 481
BtsIMutI	CAGTG	5 cut(s)	177, 276, 427, 481, 493
BveI	ACCTGC	1 cut(s)	320
CaiI	CAGNNNCTG	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	2 cut(s)	333, 349
CviJI	RGCY	8 cut(s)	5, 35, 91, 206, 272, 369, 395, 510
CviKI_1	RGCY	8 cut(s)	5, 35, 91, 206, 272, 369, 395, 510
CviQI	GTAC	2 cut(s)	333, 349
DdeI	CTNAG	2 cut(s)	6, 384
DpnI	GATC	4 cut(s)	110, 221, 293, 419
DpnII	GATC	4 cut(s)	108, 219, 291, 417
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	201, 352
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoRII	CCWGG	3 cut(s)	18, 206, 510
EcoT14I	CCWWGG	2 cut(s)	201, 352
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	201, 352
FaiI	YATR	8 cut(s)	25, 126, 155, 316, 318, 548, 567, 587
FaqI	GGGAC	1 cut(s)	230
Fnu4HI	GCNGC	2 cut(s)	270, 570
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	270, 570
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	2 cut(s)	270, 570
HaeIII	GGCC	2 cut(s)	206, 369
HapII	CCGG	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	120, 498
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	289, 295
Hpy8I	GTNNAC	2 cut(s)	120, 498
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	4 cut(s)	166, 181, 488, 613
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	7 cut(s)	251, 269, 281, 329, 572, 582, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 335
HpyF3I	CTNAG	2 cut(s)	6, 384
HpySE526I	ACGT	1 cut(s)	341
Kzo9I	GATC	4 cut(s)	108, 219, 291, 417
Lsp1109I	GCAGC	2 cut(s)	281, 556
LweI	GCATC	4 cut(s)	141, 256, 316, 531
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	2 cut(s)	47, 358
MalI	GATC	4 cut(s)	110, 221, 293, 419
MboI	GATC	4 cut(s)	108, 219, 291, 417
MboII	GAAGA	5 cut(s)	95, 115, 127, 427, 565
MfeI	CAATTG	1 cut(s)	518
MhlI	GDGCHC	1 cut(s)	93
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	4 cut(s)	304, 479, 518, 536
MluNI	TGGCCA	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	99, 421
Mox20I	TGGCCA	1 cut(s)	369
MroXI	GAANNNNTTC	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	369
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	2 cut(s)	158, 182
Msp20I	TGGCCA	1 cut(s)	369
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	4 cut(s)	20, 38, 208, 512
MunI	CAATTG	1 cut(s)	518
Mva1269I	GAATGC	2 cut(s)	405, 632
MvaI	CCWGG	3 cut(s)	20, 208, 512
MwoI	GCNNNNNNNGC	2 cut(s)	278, 335
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	4 cut(s)	108, 219, 291, 417
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	358
PctI	GAATGC	2 cut(s)	405, 632
PdmI	GAANNNNTTC	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	271, 571
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	18, 206, 510
PspGI	CCWGG	3 cut(s)	18, 206, 510
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	335
RsaI	GTAC	2 cut(s)	334, 350
RsaNI	GTAC	2 cut(s)	333, 349
RseI	CAYNNNNRTG	2 cut(s)	158, 182
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	270, 570
Sau3AI	GATC	4 cut(s)	108, 219, 291, 417
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	4 cut(s)	20, 38, 208, 512
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	9 cut(s)	93, 212, 259, 274, 334, 344, 358, 432, 516
SfaNI	GCATC	4 cut(s)	141, 256, 316, 531
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	2 cut(s)	158, 182
Sse9I	AATT	4 cut(s)	304, 479, 518, 536
SspMI	CTAG	1 cut(s)	507
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	4 cut(s)	18, 36, 206, 510
StyI	CCWWGG	2 cut(s)	201, 352
TaaI	ACNGT	4 cut(s)	166, 181, 488, 613
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	4 cut(s)	264, 324, 426, 534
TasI	AATT	4 cut(s)	304, 479, 518, 536
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	5 cut(s)	184, 283, 427, 481, 493
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	269, 569
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	3 cut(s)	127, 200, 566
TspRI	CASTG	5 cut(s)	184, 283, 427, 481, 493
VpaK11BI	GGWCC	1 cut(s)	311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.