RchiOBHm_Chr7g0215611

coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004414
Physical Location & Seq
Forward (+)
33311207 .. 33314148
2942 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19291

Sequence Viewer

Length: 924 bp
ATGGAAGCACAGAGCTTGAAAGAGGCCAATTCTAAATTGCAGAGCTTGGAAGTAGACCCTAAATCAAAGGGCTTGGAAGAAGAAGATACTAAATTACAGAGCTTGAAAGAAGACGGTTCTAAATCACTAGAAGATCCTAAATCACAGAGCTTGAAAGAAGAAGACCATAAATCACAGCGATTGAAAGAAGAGGAATGTAAGTCGCACAGCTCGGAAGAAGACCTTAAGTTAAACAGCTTGGAAGAAGACCCTAAATCGCAGAGCTTGAAAGAAGAAGAGCCTAAATTACAGAGCTTGGAAGAGGAAGAGCCTAAATCACAGAGCTTGAAAGAAGAAGGACGAGATAGCTTGGGAGACCCTAAATTCAATGAAAATGCATTGCAATTCCTGGATTCAATGGATGGGTATTTAACCCTAATGGATTCATTGTCTTGGACACTACGGCAGGGATGGCTGCAACTAGCGAGTGCGCGCCATTCAATGGGTGGGTCGCGGGTGAGCAGTGCAGTGTTGGATATGAAGCCCCACTCAGCTGCTACTTTTTTGCAAGTCAGCAAACAATCCAATCCAGGAGCAGGGTTAGGGGAAATTCATCATTTTACATTGCTGAAATGGGCCTCATCGGATAATGGAAATGGAGCTCCACATAGAGATGTGAGTCCGCAGCTAAGACAAAGAAAGGACAAGGATGGAGATCCAGCCCCTGTTACAGCTGAAGAGGACCATCATCAGCAACTTCAGAAGGAGCGGTTTAAATCACTTTCGGTGTTTGGCGCTTTGGTTTCCCCCAAGCTACGGGCGGCTCAGCTCTCATTCGAAACTGCGCTGGAAGCACTTGTAGAGATTGCTAACATGCGATTGTTGATGCTTTCCAATTTTCATGAAGTAAGAAAAGAAATGGAATCAGCAAATGGCAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

34.34

Weight (kDa)

5.23

Isoelectric Point (pI)

62.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vma22_CCDC115 PF21730 124 - 274 2.6e-09 Vma22/CCDC115
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 748
AccI GTMKAC 1 cut(s) 54
AccII CGCG 2 cut(s) 472, 493
AciI CCGC 4 cut(s) 493, 662, 748, 800
AclWI GGATC 2 cut(s) 128, 689
AcsI RAATTY 2 cut(s) 362, 588
AcuI CTGAAG 2 cut(s) 722, 735
AfiI CCNNNNNNNGG 3 cut(s) 481, 575, 795
AflII CTTAAG 1 cut(s) 224
AgsI TTSAA 9 cut(s) 19, 106, 154, 184, 268, 328, 367, 396, 480
AjnI CCWGG 2 cut(s) 387, 568
Alw21I GWGCWC 1 cut(s) 643
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 2 cut(s) 128, 689
AlwNI CAGNNNCTG 1 cut(s) 704
AoxI GGCC 2 cut(s) 24, 615
ApeKI GCWGC 3 cut(s) 454, 533, 664
ApoI RAATTY 2 cut(s) 362, 588
AspLEI GCGC 4 cut(s) 472, 474, 776, 826
AspS9I GGNCC 2 cut(s) 615, 721
AsuHPI GGTGA 1 cut(s) 508
AsuII TTCGAA 1 cut(s) 816
AvaII GGWCC 1 cut(s) 721
BanII GRGCYC 1 cut(s) 643
BbsI GAAGAC 4 cut(s) 117, 168, 225, 252
Bbv12I GWGCWC 1 cut(s) 643
BbvI GCAGC 3 cut(s) 441, 520, 676
BccI CCATC 4 cut(s) 395, 444, 683, 732
BceAI ACGGC 1 cut(s) 458
BciT130I CCWGG 2 cut(s) 389, 570
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 2 cut(s) 128, 461
BfoI RGCGCY 1 cut(s) 777
BfrI CTTAAG 1 cut(s) 224
BisI GCNGC 4 cut(s) 455, 534, 665, 801
BlpI GCTNAGC 1 cut(s) 804
BlsI GCNGC 4 cut(s) 456, 535, 666, 802
Bme1390I CCNGG 2 cut(s) 389, 570
Bme18I GGWCC 1 cut(s) 721
BmgT120I GGNCC 2 cut(s) 615, 721
BmrFI CCNGG 2 cut(s) 389, 570
BmsI GCATC 1 cut(s) 855
BpiI GAAGAC 4 cut(s) 117, 168, 225, 252
Bpu1102I GCTNAGC 1 cut(s) 804
Bpu14I TTCGAA 1 cut(s) 816
BsaBI GATNNNNATC 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 348
Bsc4I CCNNNNNNNGG 3 cut(s) 481, 575, 795
Bse3DI GCAATG 2 cut(s) 377, 602
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 2 cut(s) 389, 570
BseGI GGATG 3 cut(s) 406, 455, 694
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 3 cut(s) 481, 575, 795
BseMI GCAATG 2 cut(s) 377, 602
BseMII CTCAG 2 cut(s) 543, 818
BsePI GCGCGC 1 cut(s) 470
BseXI GCAGC 3 cut(s) 441, 520, 676
BsgI GTGCAG 1 cut(s) 525
Bsh1236I CGCG 2 cut(s) 472, 493
BshFI GGCC 2 cut(s) 26, 617
BsiHKAI GWGCWC 1 cut(s) 643
BslI CCNNNNNNNGG 3 cut(s) 481, 575, 795
BsmAI GTCTC 1 cut(s) 348
BsnI GGCC 2 cut(s) 26, 617
Bso31I GGTCTC 1 cut(s) 348
Bsp119I TTCGAA 1 cut(s) 816
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 2 cut(s) 133, 694
Bsp1720I GCTNAGC 1 cut(s) 804
BspACI CCGC 4 cut(s) 493, 662, 748, 800
BspANI GGCC 2 cut(s) 26, 617
BspCNI CTCAG 2 cut(s) 542, 817
BspFNI CGCG 2 cut(s) 472, 493
BspHI TCATGA 1 cut(s) 880
BspPI GGATC 2 cut(s) 128, 689
BspQI GCTCTTC 2 cut(s) 270, 300
BspT104I TTCGAA 1 cut(s) 816
BspTI CTTAAG 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 348
BsrBI CCGCTC 1 cut(s) 748
BsrDI GCAATG 2 cut(s) 377, 602
BssHII GCGCGC 1 cut(s) 470
BssMI GATC 2 cut(s) 133, 694
Bst2UI CCWGG 2 cut(s) 389, 570
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 5 cut(s) 183, 270, 294, 300, 711
BstAFI CTTAAG 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 816
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 3 cut(s) 529, 668, 804
BstF5I GGATG 3 cut(s) 406, 455, 694
BstFNI CGCG 2 cut(s) 472, 493
BstH2I RGCGCY 1 cut(s) 777
BstHHI GCGC 4 cut(s) 472, 474, 776, 826
BstKTI GATC 2 cut(s) 136, 697
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 2 cut(s) 133, 694
BstMWI GCNNNNNNNGC 2 cut(s) 451, 830
BstNI CCWGG 2 cut(s) 389, 570
BstNSI RCATGY 1 cut(s) 856
BstSCI CCNGG 2 cut(s) 387, 568
BstUI CGCG 2 cut(s) 472, 493
BstV1I GCAGC 3 cut(s) 441, 520, 676
BstV2I GAAGAC 4 cut(s) 117, 168, 225, 252
BstX2I RGATCY 2 cut(s) 133, 694
BstYI RGATCY 2 cut(s) 133, 694
BsuRI GGCC 2 cut(s) 26, 617
BtsCI GGATG 3 cut(s) 406, 455, 694
BtsI GCAGTG 2 cut(s) 508, 513
BtsIMutI CAGTG 2 cut(s) 508, 513
Cac8I GCNNGC 1 cut(s) 472
CaiI CAGNNNCTG 1 cut(s) 704
CciI TCATGA 1 cut(s) 880
CfoI GCGC 4 cut(s) 472, 474, 776, 826
Cfr13I GGNCC 2 cut(s) 615, 721
CviAII CATG 2 cut(s) 853, 881
DdeI CTNAG 3 cut(s) 529, 668, 804
DpnI GATC 2 cut(s) 135, 696
DpnII GATC 2 cut(s) 133, 694
DraI TTTAAA 1 cut(s) 754
Eam1104I CTCTTC 5 cut(s) 183, 270, 294, 300, 711
EarI CTCTTC 5 cut(s) 183, 270, 294, 300, 711
Ecl136II GAGCTC 1 cut(s) 641
Eco24I GRGCYC 1 cut(s) 643
Eco31I GGTCTC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 721
Eco53kI GAGCTC 1 cut(s) 641
Eco57I CTGAAG 2 cut(s) 722, 735
EcoICRI GAGCTC 1 cut(s) 641
EcoRII CCWGG 2 cut(s) 387, 568
EcoT22I ATGCAT 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 643
FaeI CATG 2 cut(s) 856, 884
FaiI YATR 5 cut(s) 168, 518, 648, 854, 882
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FatI CATG 2 cut(s) 852, 880
FauI CCCGC 1 cut(s) 486
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 4 cut(s) 455, 534, 665, 801
FokI GGATG 3 cut(s) 413, 462, 701
FriOI GRGCYC 1 cut(s) 643
Fsp4HI GCNGC 4 cut(s) 455, 534, 665, 801
FspBI CTAG 2 cut(s) 128, 461
GlaI GCGC 4 cut(s) 471, 473, 775, 825
GluI GCNGC 4 cut(s) 455, 534, 665, 801
HaeII RGCGCY 1 cut(s) 777
HaeIII GGCC 2 cut(s) 26, 617
HhaI GCGC 4 cut(s) 472, 474, 776, 826
Hin1II CATG 2 cut(s) 856, 884
Hin6I GCGC 4 cut(s) 470, 472, 774, 824
HinP1I GCGC 4 cut(s) 470, 472, 774, 824
HinfI GANTC 4 cut(s) 392, 422, 658, 902
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 214, 625, 741
Hpy188III TCNNGA 1 cut(s) 881
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 329, 736
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 6 cut(s) 40, 377, 382, 457, 506, 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 451, 830
HpyF3I CTNAG 3 cut(s) 529, 668, 804
Hsp92II CATG 2 cut(s) 856, 884
HspAI GCGC 4 cut(s) 470, 472, 774, 824
Kzo9I GATC 2 cut(s) 133, 694
LguI GCTCTTC 2 cut(s) 270, 300
LmnI GCTCC 4 cut(s) 572, 638, 646, 745
LpnPI CCDG 9 cut(s) 374, 401, 431, 555, 561, 582, 711, 717, 812
Lsp1109I GCAGC 3 cut(s) 441, 520, 676
LweI GCATC 1 cut(s) 855
MaeI CTAG 2 cut(s) 128, 461
MaeIII GTNAC 1 cut(s) 706
MalI GATC 2 cut(s) 135, 696
MbiI CCGCTC 1 cut(s) 748
MboI GATC 2 cut(s) 133, 694
MflI RGATCY 2 cut(s) 133, 694
MhlI GDGCHC 1 cut(s) 643
MluCI AATT 8 cut(s) 28, 35, 92, 284, 362, 383, 588, 874
MlyI GAGTC 1 cut(s) 667
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 5 cut(s) 16, 184, 295, 628, 712
Mph1103I ATGCAT 1 cut(s) 379
MseI TTAA 4 cut(s) 225, 230, 410, 753
MslI CAYNNNNRTG 1 cut(s) 651
MspA1I CMGCKG 2 cut(s) 533, 713
MspCI CTTAAG 1 cut(s) 224
MspR9I CCNGG 2 cut(s) 389, 570
MvaI CCWGG 2 cut(s) 389, 570
MvnI CGCG 2 cut(s) 472, 493
MwoI GCNNNNNNNGC 2 cut(s) 451, 830
NdeII GATC 2 cut(s) 133, 694
NlaIII CATG 2 cut(s) 856, 884
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 1 cut(s) 856
NspV TTCGAA 1 cut(s) 816
PagI TCATGA 1 cut(s) 880
PauI GCGCGC 1 cut(s) 470
PciSI GCTCTTC 2 cut(s) 270, 300
PfeI GAWTC 3 cut(s) 392, 422, 902
PflMI CCANNNNNTGG 1 cut(s) 481
PfoI TCCNGGA 2 cut(s) 387, 568
PkrI GCNGC 4 cut(s) 456, 535, 666, 802
PleI GAGTC 1 cut(s) 666
PpsI GAGTC 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 643
Psp6I CCWGG 2 cut(s) 387, 568
PspGI CCWGG 2 cut(s) 387, 568
PspPI GGNCC 2 cut(s) 615, 721
PstNI CAGNNNCTG 1 cut(s) 704
PsuI RGATCY 2 cut(s) 133, 694
PteI GCGCGC 1 cut(s) 470
PvuII CAGCTG 2 cut(s) 533, 713
RseI CAYNNNNRTG 1 cut(s) 651
SacI GAGCTC 1 cut(s) 643
SapI GCTCTTC 2 cut(s) 270, 300
SaqAI TTAA 4 cut(s) 225, 230, 410, 753
SatI GCNGC 4 cut(s) 455, 534, 665, 801
Sau3AI GATC 2 cut(s) 133, 694
Sau96I GGNCC 2 cut(s) 615, 721
SchI GAGTC 1 cut(s) 667
ScrFI CCNGG 2 cut(s) 389, 570
SduI GDGCHC 1 cut(s) 643
SfaNI GCATC 1 cut(s) 855
SfuI TTCGAA 1 cut(s) 816
SinI GGWCC 1 cut(s) 721
SmiMI CAYNNNNRTG 1 cut(s) 651
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 8 cut(s) 28, 35, 92, 284, 362, 383, 588, 874
SsiI CCGC 4 cut(s) 493, 662, 748, 800
SspMI CTAG 2 cut(s) 128, 461
SstI GAGCTC 1 cut(s) 643
StyD4I CCNGG 2 cut(s) 387, 568
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 816
TasI AATT 8 cut(s) 28, 35, 92, 284, 362, 383, 588, 874
TauI GCSGC 1 cut(s) 803
TfiI GAWTC 3 cut(s) 392, 422, 902
Tru1I TTAA 4 cut(s) 225, 230, 410, 753
Tru9I TTAA 4 cut(s) 225, 230, 410, 753
TscAI CASTG 2 cut(s) 508, 513
TseI GCWGC 3 cut(s) 454, 533, 664
TspDTI ATGAA 6 cut(s) 384, 414, 533, 581, 869, 897
TspRI CASTG 2 cut(s) 508, 513
Van91I CCANNNNNTGG 1 cut(s) 481
Vha464I CTTAAG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 721
XapI RAATTY 2 cut(s) 362, 588
XceI RCATGY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 2 cut(s) 128, 461
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.