Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004414

Physical Location & Seq

Genomic Coordinates Forward (+)

28476175 .. 28478946

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0204100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAACCTAGCCACCTCGCCCTCGATCGAAATCATCGGCCACTGCACGCGACCCCCAAAGCTACGACGTCGTTGTTCCTTAATCCTCTTCGATCTCCGGCCATCTTTTCAACACGCTCAGACCGATCCGCAGGAGTTTCGACCACTAGACGACGACTTCTCATTCAATCATTCTCCGACTTTGCCAAAAGAGGGAGGAAGAATTGCTTTCTTGTTGGTGGAGAGAGAGTGAAGAATGCAGTGAAGGTCCGAAACAGGGGCCTAGTTCCAGTAAGAAAGTGGATGAGAAGGCTCGTTCGGTTCCATTGTATGAAGAGGAAGAAGAGAGAGTCGGTGTCCTTGTTAAGGGAGGGCTTTATGAAGTATTGTTTAGTGAAGCGGCATTGTTTCCCTGTTTATTGGGATGGAGAAAACCGGCGTGTCTTAAGAGGCAACTGGTTTGCTCGTAAAGGGGTTGATTGGCTGCCTCTTCGTGAATATTTCCTTATCTTCTTATCTACAAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

20.07

Weight (kDa)

11.76

Isoelectric Point (pI)

60.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20770 AT1G20770
fragaria_vesca	FvH4_7g11300 FvH4_7g11300 FvH4_7g11300
malus_domestica	MD02G1098700.v1.1 MD07G1117600.v1.1
prunus_persica	Prupe.2G140800_v2.0.a1
pyrus_communis	pycom07g10720
rosa_chinensis	RchiOBHm_Chr1g0349471 RchiOBHm_Chr7g0215611
rosa_laevigata	RLG00000002643 RLG00000028546
rosa_multiflora	Rmu_co7982600.1_g000001 Rmu_sc0000898.1_g000041 Rmu_sc0000898.1_g000084 Rmu_sc0002495.1_g000011 Rmu_sc0007602.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244050 Rroxscaffold_4G00305520
rosa_rugosa	Rorug01G0204000 Rorug01G0204100 Rorug07G0155100
rosa_samantha	Rh1AG221400 Rh1BG187500 Rh1CG206300 Rh1DG216800 Rh7AG291400 Rh7CG311500 Rh7DG295200
rosa_wichuraiana	Rw1G018820 Rw7G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	71
AccII	CGCG	1 cut(s)	50
AciI	CCGC	2 cut(s)	129, 379
AclWI	GGATC	1 cut(s)	120
AcoI	YGGCCR	2 cut(s)	38, 99
AcyI	GRCGYC	1 cut(s)	68
AfiI	CCNNNNNNNGG	3 cut(s)	192, 256, 345
AflII	CTTAAG	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	111, 167
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
AlwI	GGATC	1 cut(s)	120
AoxI	GGCC	3 cut(s)	38, 99, 259
ApeKI	GCWGC	1 cut(s)	463
AspS9I	GGNCC	2 cut(s)	247, 259
AvaII	GGWCC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	2 cut(s)	110, 398
BcgI	CGANNNNNNTGC	2 cut(s)	120, 154
BfaI	CTAG	3 cut(s)	9, 147, 263
BfrI	CTTAAG	1 cut(s)	424
BisI	GCNGC	2 cut(s)	380, 464
BlsI	GCNGC	2 cut(s)	381, 465
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	247, 259
BmiI	GGNNCC	2 cut(s)	260, 302
BsaBI	GATNNNNATC	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 256, 345
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	2 cut(s)	269, 440
Bse8I	GATNNNNATC	1 cut(s)	30
BseGI	GGATG	2 cut(s)	288, 409
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	3 cut(s)	192, 256, 345
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	269, 440
BseXI	GCAGC	1 cut(s)	450
BsgI	GTGCAG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	3 cut(s)	40, 101, 261
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	98, 415
BslI	CCNNNNNNNGG	3 cut(s)	192, 256, 345
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	3 cut(s)	40, 101, 261
Bsp143I	GATC	3 cut(s)	25, 92, 125
BspACI	CCGC	2 cut(s)	129, 379
BspANI	GGCC	3 cut(s)	40, 101, 261
BspCNI	CTCAG	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	260, 302
BspPI	GGATC	1 cut(s)	120
BspTI	CTTAAG	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	269, 440
BssAI	RCCGGY	1 cut(s)	414
BssMI	GATC	3 cut(s)	25, 92, 125
BssNI	GRCGYC	1 cut(s)	68
Bst6I	CTCTTC	4 cut(s)	93, 308, 317, 474
BstACI	GRCGYC	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	424
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	118
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	288, 409
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	3 cut(s)	28, 95, 128
BstMBI	GATC	3 cut(s)	25, 92, 125
BstMCI	CGRYCG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	450
BsuRI	GGCC	3 cut(s)	40, 101, 261
BtsCI	GGATG	2 cut(s)	288, 409
BtsI	GCAGTG	2 cut(s)	41, 246
BtsIMutI	CAGTG	2 cut(s)	41, 246
Cac8I	GCNNGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	414
Cfr13I	GGNCC	2 cut(s)	247, 259
CviJI	RGCY	8 cut(s)	12, 40, 62, 101, 261, 292, 354, 463
CviKI_1	RGCY	8 cut(s)	12, 40, 62, 101, 261, 292, 354, 463
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	3 cut(s)	27, 94, 127
DpnII	GATC	3 cut(s)	25, 92, 125
EaeI	YGGCCR	2 cut(s)	38, 99
Eam1104I	CTCTTC	4 cut(s)	93, 308, 317, 474
EarI	CTCTTC	4 cut(s)	93, 308, 317, 474
Eco47I	GGWCC	1 cut(s)	247
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoO109I	RGGNCCY	1 cut(s)	259
FaiI	YATR	2 cut(s)	311, 359
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
Fnu4HI	GCNGC	2 cut(s)	380, 464
FokI	GGATG	2 cut(s)	295, 416
Fsp4HI	GCNGC	2 cut(s)	380, 464
FspBI	CTAG	3 cut(s)	9, 147, 263
GluI	GCNGC	2 cut(s)	380, 464
HaeIII	GGCC	3 cut(s)	40, 101, 261
HapII	CCGG	2 cut(s)	98, 415
Hin1I	GRCGYC	1 cut(s)	68
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	2 cut(s)	98, 415
Hpy188I	TCNGA	3 cut(s)	121, 178, 251
Hpy188III	TCNNGA	1 cut(s)	473
Hpy99I	CGWCG	3 cut(s)	70, 73, 156
HpyAV	CCTTC	2 cut(s)	238, 282
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	46, 239
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	25, 92, 125
LpnPI	CCDG	7 cut(s)	111, 117, 241, 282, 405, 421, 428
Lsp1109I	GCAGC	1 cut(s)	450
MaeI	CTAG	3 cut(s)	9, 147, 263
MaeII	ACGT	1 cut(s)	68
MalI	GATC	3 cut(s)	27, 94, 127
MboI	GATC	3 cut(s)	25, 92, 125
MboII	GAAGA	8 cut(s)	80, 211, 244, 325, 331, 334, 461, 481
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	9 cut(s)	26, 32, 96, 185, 189, 309, 343, 422, 477
MseI	TTAA	3 cut(s)	81, 344, 425
MspCI	CTTAAG	1 cut(s)	424
MspI	CCGG	2 cut(s)	98, 415
Mva1269I	GAATGC	1 cut(s)	241
MvnI	CGCG	1 cut(s)	50
NdeII	GATC	3 cut(s)	25, 92, 125
NlaIV	GGNNCC	2 cut(s)	260, 302
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PctI	GAATGC	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	381, 465
Ple19I	CGATCG	1 cut(s)	28
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	260, 302
PspPI	GGNCC	2 cut(s)	247, 259
PvuI	CGATCG	1 cut(s)	28
SaqAI	TTAA	3 cut(s)	81, 344, 425
SatI	GCNGC	2 cut(s)	380, 464
Sau3AI	GATC	3 cut(s)	25, 92, 125
Sau96I	GGNCC	2 cut(s)	247, 259
SchI	GAGTC	1 cut(s)	338
SetI	ASST	5 cut(s)	10, 18, 64, 71, 249
SinI	GGWCC	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	2 cut(s)	129, 379
SspI	AATATT	1 cut(s)	479
SspMI	CTAG	3 cut(s)	9, 147, 263
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	4 cut(s)	24, 28, 91, 140
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	202
TauI	GCSGC	1 cut(s)	382
Tru1I	TTAA	3 cut(s)	81, 344, 425
Tru9I	TTAA	3 cut(s)	81, 344, 425
TscAI	CASTG	2 cut(s)	48, 246
TseI	GCWGC	1 cut(s)	463
TspDTI	ATGAA	3 cut(s)	17, 326, 374
TspRI	CASTG	2 cut(s)	48, 246
Vha464I	CTTAAG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	247
XagI	CCTNNNNNAGG	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XspI	CTAG	3 cut(s)	9, 147, 263
ZraI	GACGTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.