Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004414

Physical Location & Seq

Genomic Coordinates Forward (+)

26184471 .. 26187004

Gene Structure 2534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00305520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAAGCACAGAGCTTGAAAGAGGACAATCCTAAATTGCAGAGCTTGGAAGAAGACCCTAAACCTAAGGGCTTGGAAGAAGAAGATACTAAATTACAGAGCTTGAAAGAAGACGGTTCTAAATCACTAGAAGACCCTAAATCACAGAGCTCGAAAGAAGAAGACCATAAATCTCAGAGATTGAAAGAAGAGGAATGTAAGTCGCACAGCTCGGAAGAAGACCTTAAGTTAAAGAGCTTGGAAGAAGACCCTAAATCGCAGAGCTTGGAAGAAGACCCTAAATCGCAGAGCTTGAAAGAAGAAGACACTAAATCACAGAGCTTGGAAGAGGAAGAGCCTAAATCACAGAGCTTGAAAGAAGAAGGACAAGATAGCTTGGGAGACCCTAGATTCAATGAAAATGCATTGCAATTCCTAGATTCAATGGATGGGTATTTAACACTATTGGATTCATTGTCTTGGACACTTCGGCAGATGGCTGCAACTAGCGAGTGCGCGCCATTCAATGGGTGGGTCACGGGTGAGCAGTGCTGTGTTGGATATGAAGCCCCACTCGGCTGCTACGTTTTTGCAAGTCAGCAAACAATCCAATCCAGGAGCAGGGTTAGGGAAATTCATCATTTTACATTGCTGAAATGGGCCTCCTCTGATAATGGAAATGGAGCTCCACATAGAGATGCAAGTCCGCAGCTAAGACAAAGAAAGGACAAGGATGGAGATTCAGCTCCAGTTACAGCTGAAGATGATTATCAACATCAACTTCAGAAGGAGCGGTTTAAATCACTTTCGGTGTTTGGCGCTTTGGTTTCCCCCAAGCTACGGGCGGCTCAGCTCTCATTTGAAACTGCACTCGAAGCACTTGTAGAGATTGCTAACATGCGATCGTTGATGCTTTCCAATTTTCATGAAGTCAGAAAAGAAATGGAATCAGCAAATGGCAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.54

Weight (kDa)

4.82

Isoelectric Point (pI)

67.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20770 AT1G20770
fragaria_vesca	FvH4_7g11300 FvH4_7g11300 FvH4_7g11300
malus_domestica	MD02G1098700.v1.1 MD07G1117600.v1.1
prunus_persica	Prupe.2G140800_v2.0.a1
pyrus_communis	pycom07g10720
rosa_chinensis	RchiOBHm_Chr1g0349471 RchiOBHm_Chr7g0215611
rosa_laevigata	RLG00000002643 RLG00000028546
rosa_multiflora	Rmu_co7982600.1_g000001 Rmu_sc0000898.1_g000041 Rmu_sc0000898.1_g000084 Rmu_sc0002495.1_g000011 Rmu_sc0007602.1_g000009
rosa_roxburghii	Rroxscaffold_3G00244050 Rroxscaffold_4G00305520
rosa_rugosa	Rorug01G0204000 Rorug01G0204100 Rorug07G0155100
rosa_samantha	Rh1AG221400 Rh1BG187500 Rh1CG206300 Rh1DG216800 Rh7AG291400 Rh7CG311500 Rh7DG295200
rosa_wichuraiana	Rw1G018820 Rw7G024870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccBSI	CCGCTC	1 cut(s)	772
AccII	CGCG	1 cut(s)	497
AciI	CCGC	3 cut(s)	686, 772, 824
AcsI	RAATTY	1 cut(s)	612
AcuI	CTGAAG	2 cut(s)	746, 759
AfiI	CCNNNNNNNGG	3 cut(s)	506, 600, 819
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	9 cut(s)	19, 106, 184, 295, 355, 394, 423, 505, 842
AjnI	CCWGG	1 cut(s)	593
Alw21I	GWGCWC	2 cut(s)	152, 667
Alw26I	GTCTC	1 cut(s)	375
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	3 cut(s)	479, 558, 688
ApoI	RAATTY	1 cut(s)	612
AspLEI	GCGC	3 cut(s)	497, 499, 800
AspS9I	GGNCC	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	533
AxyI	CCTNAGG	1 cut(s)	66
BanII	GRGCYC	2 cut(s)	152, 667
BbsI	GAAGAC	8 cut(s)	60, 117, 138, 168, 225, 252, 279, 309
Bbv12I	GWGCWC	2 cut(s)	152, 667
BbvI	GCAGC	3 cut(s)	466, 545, 700
BccI	CCATC	3 cut(s)	422, 469, 707
BciT130I	CCWGG	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	4 cut(s)	128, 387, 416, 486
BfoI	RGCGCY	1 cut(s)	801
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	4 cut(s)	480, 559, 689, 825
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	4 cut(s)	481, 560, 690, 826
Bme1390I	CCNGG	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	639
BmrFI	CCNGG	1 cut(s)	595
BmsI	GCATC	2 cut(s)	667, 879
BpiI	GAAGAC	8 cut(s)	60, 117, 138, 168, 225, 252, 279, 309
BpmI	CTGGAG	1 cut(s)	711
Bpu1102I	GCTNAGC	1 cut(s)	828
BsaBI	GATNNNNATC	1 cut(s)	747
BsaI	GGTCTC	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	3 cut(s)	506, 600, 819
Bse1I	ACTGG	1 cut(s)	728
Bse21I	CCTNAGG	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	404, 626
Bse8I	GATNNNNATC	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	595
BseGI	GGATG	2 cut(s)	433, 718
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	3 cut(s)	506, 600, 819
BseMI	GCAATG	2 cut(s)	404, 626
BseMII	CTCAG	2 cut(s)	188, 842
BseNI	ACTGG	1 cut(s)	728
BsePI	GCGCGC	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	634
BseXI	GCAGC	3 cut(s)	466, 545, 700
BsgI	GTGCAG	1 cut(s)	831
Bsh1236I	CGCG	1 cut(s)	497
Bsh1285I	CGRYCG	1 cut(s)	884
BshFI	GGCC	1 cut(s)	641
BsiEI	CGRYCG	1 cut(s)	884
BsiHKAI	GWGCWC	2 cut(s)	152, 667
BslI	CCNNNNNNNGG	3 cut(s)	506, 600, 819
BsmAI	GTCTC	1 cut(s)	375
BsnI	GGCC	1 cut(s)	641
Bso31I	GGTCTC	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	152, 667
Bsp143I	GATC	1 cut(s)	881
Bsp1720I	GCTNAGC	1 cut(s)	828
BspACI	CCGC	3 cut(s)	686, 772, 824
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	2 cut(s)	187, 841
BspFNI	CGCG	1 cut(s)	497
BspHI	TCATGA	1 cut(s)	904
BspQI	GCTCTTC	1 cut(s)	327
BspTI	CTTAAG	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	375
BsrBI	CCGCTC	1 cut(s)	772
BsrDI	GCAATG	2 cut(s)	404, 626
BsrI	ACTGG	1 cut(s)	728
BssHII	GCGCGC	1 cut(s)	495
BssMI	GATC	1 cut(s)	881
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	3 cut(s)	183, 321, 327
BstAFI	CTTAAG	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	4 cut(s)	66, 174, 692, 828
BstF5I	GGATG	2 cut(s)	433, 718
BstFNI	CGCG	1 cut(s)	497
BstH2I	RGCGCY	1 cut(s)	801
BstHHI	GCGC	3 cut(s)	497, 499, 800
BstKTI	GATC	1 cut(s)	884
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	881
BstMCI	CGRYCG	1 cut(s)	884
BstMWI	GCNNNNNNNGC	1 cut(s)	854
BstNI	CCWGG	1 cut(s)	595
BstNSI	RCATGY	1 cut(s)	880
BstSCI	CCNGG	1 cut(s)	593
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	3 cut(s)	466, 545, 700
BstV2I	GAAGAC	8 cut(s)	60, 117, 138, 168, 225, 252, 279, 309
Bsu36I	CCTNAGG	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	641
BtsCI	GGATG	2 cut(s)	433, 718
BtsI	GCAGTG	1 cut(s)	533
BtsIMutI	CAGTG	1 cut(s)	533
Cac8I	GCNNGC	1 cut(s)	497
CciI	TCATGA	1 cut(s)	904
CfoI	GCGC	3 cut(s)	497, 499, 800
Cfr13I	GGNCC	1 cut(s)	639
CviAII	CATG	2 cut(s)	877, 905
DdeI	CTNAG	4 cut(s)	66, 174, 692, 828
DpnI	GATC	1 cut(s)	883
DpnII	GATC	1 cut(s)	881
DraI	TTTAAA	1 cut(s)	778
Eam1104I	CTCTTC	3 cut(s)	183, 321, 327
EarI	CTCTTC	3 cut(s)	183, 321, 327
Ecl136II	GAGCTC	2 cut(s)	150, 665
Eco24I	GRGCYC	2 cut(s)	152, 667
Eco31I	GGTCTC	1 cut(s)	375
Eco53kI	GAGCTC	2 cut(s)	150, 665
Eco57I	CTGAAG	2 cut(s)	746, 759
Eco81I	CCTNAGG	1 cut(s)	66
EcoICRI	GAGCTC	2 cut(s)	150, 665
EcoRII	CCWGG	1 cut(s)	593
EcoT22I	ATGCAT	1 cut(s)	406
EcoT38I	GRGCYC	2 cut(s)	152, 667
FaeI	CATG	2 cut(s)	880, 908
FaiI	YATR	5 cut(s)	168, 543, 672, 878, 906
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	2 cut(s)	876, 904
Fnu4HI	GCNGC	4 cut(s)	480, 559, 689, 825
FokI	GGATG	2 cut(s)	440, 725
FriOI	GRGCYC	2 cut(s)	152, 667
Fsp4HI	GCNGC	4 cut(s)	480, 559, 689, 825
FspBI	CTAG	4 cut(s)	128, 387, 416, 486
GlaI	GCGC	3 cut(s)	496, 498, 799
GluI	GCNGC	4 cut(s)	480, 559, 689, 825
GsuI	CTGGAG	1 cut(s)	711
HaeII	RGCGCY	1 cut(s)	801
HaeIII	GGCC	1 cut(s)	641
HhaI	GCGC	3 cut(s)	497, 499, 800
Hin1II	CATG	2 cut(s)	880, 908
Hin6I	GCGC	3 cut(s)	495, 497, 798
HinP1I	GCGC	3 cut(s)	495, 497, 798
HinfI	GANTC	5 cut(s)	390, 419, 449, 719, 926
HphI	GGTGA	1 cut(s)	533
Hpy188I	TCNGA	5 cut(s)	177, 214, 649, 765, 914
Hpy188III	TCNNGA	1 cut(s)	905
HpyAV	CCTTC	2 cut(s)	356, 760
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	7 cut(s)	40, 404, 409, 482, 572, 680, 848
HpyF10VI	GCNNNNNNNGC	1 cut(s)	854
HpyF3I	CTNAG	4 cut(s)	66, 174, 692, 828
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	2 cut(s)	880, 908
HspAI	GCGC	3 cut(s)	495, 497, 798
Kzo9I	GATC	1 cut(s)	881
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	5 cut(s)	597, 662, 670, 730, 769
LpnPI	CCDG	4 cut(s)	580, 586, 607, 741
Lsp1109I	GCAGC	3 cut(s)	466, 545, 700
LweI	GCATC	2 cut(s)	667, 879
MaeI	CTAG	4 cut(s)	128, 387, 416, 486
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	514, 730
MalI	GATC	1 cut(s)	883
MbiI	CCGCTC	1 cut(s)	772
MboI	GATC	1 cut(s)	881
MhlI	GDGCHC	2 cut(s)	152, 667
MluCI	AATT	5 cut(s)	35, 92, 410, 612, 898
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	5 cut(s)	16, 184, 322, 652, 655
Mph1103I	ATGCAT	1 cut(s)	406
MseI	TTAA	4 cut(s)	225, 230, 437, 777
MslI	CAYNNNNRTG	1 cut(s)	675
MspA1I	CMGCKG	1 cut(s)	737
MspCI	CTTAAG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	595
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	854
NdeII	GATC	1 cut(s)	881
NlaIII	CATG	2 cut(s)	880, 908
NmeAIII	GCCGAG	1 cut(s)	534
NmuCI	GTSAC	1 cut(s)	514
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	1 cut(s)	880
PagI	TCATGA	1 cut(s)	904
PauI	GCGCGC	1 cut(s)	495
PciSI	GCTCTTC	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PfeI	GAWTC	5 cut(s)	390, 419, 449, 719, 926
PflMI	CCANNNNNTGG	1 cut(s)	506
PfoI	TCCNGGA	1 cut(s)	593
PkrI	GCNGC	4 cut(s)	481, 560, 690, 826
Ple19I	CGATCG	1 cut(s)	884
Psp124BI	GAGCTC	2 cut(s)	152, 667
Psp6I	CCWGG	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	593
PspPI	GGNCC	1 cut(s)	639
PteI	GCGCGC	1 cut(s)	495
PvuI	CGATCG	1 cut(s)	884
PvuII	CAGCTG	1 cut(s)	737
RseI	CAYNNNNRTG	1 cut(s)	675
SacI	GAGCTC	2 cut(s)	152, 667
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	4 cut(s)	225, 230, 437, 777
SatI	GCNGC	4 cut(s)	480, 559, 689, 825
Sau3AI	GATC	1 cut(s)	881
Sau96I	GGNCC	1 cut(s)	639
ScrFI	CCNGG	1 cut(s)	595
SduI	GDGCHC	2 cut(s)	152, 667
SfaNI	GCATC	2 cut(s)	667, 879
SmiMI	CAYNNNNRTG	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	5 cut(s)	35, 92, 410, 612, 898
SsiI	CCGC	3 cut(s)	686, 772, 824
SspMI	CTAG	4 cut(s)	128, 387, 416, 486
SstI	GAGCTC	2 cut(s)	152, 667
StyD4I	CCNGG	1 cut(s)	593
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	2 cut(s)	152, 852
TasI	AATT	5 cut(s)	35, 92, 410, 612, 898
TauI	GCSGC	1 cut(s)	827
TfiI	GAWTC	5 cut(s)	390, 419, 449, 719, 926
Tru1I	TTAA	4 cut(s)	225, 230, 437, 777
Tru9I	TTAA	4 cut(s)	225, 230, 437, 777
TscAI	CASTG	1 cut(s)	533
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	3 cut(s)	479, 558, 688
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	6 cut(s)	411, 441, 558, 605, 893, 921
TspRI	CASTG	1 cut(s)	533
Van91I	CCANNNNNTGG	1 cut(s)	506
Vha464I	CTTAAG	1 cut(s)	224
XapI	RAATTY	1 cut(s)	612
XceI	RCATGY	1 cut(s)	880
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XspI	CTAG	4 cut(s)	128, 387, 416, 486
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.